{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,2]],"date-time":"2025-11-02T16:52:26Z","timestamp":1762102346204,"version":"3.37.3"},"reference-count":64,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2019,2,14]],"date-time":"2019-02-14T00:00:00Z","timestamp":1550102400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2019,2,14]],"date-time":"2019-02-14T00:00:00Z","timestamp":1550102400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["U01TR0062-1","TR02019"],"award-info":[{"award-number":["U01TR0062-1","TR02019"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Rare Kidney Stone Consortium","award":["U54DK083908"],"award-info":[{"award-number":["U54DK083908"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Med Inform Decis Mak"],"published-print":{"date-parts":[[2019,12]]},"DOI":"10.1186\/s12911-019-0752-9","type":"journal-article","created":{"date-parts":[[2019,2,14]],"date-time":"2019-02-14T14:04:33Z","timestamp":1550153073000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":24,"title":["Rare disease knowledge enrichment through a data-driven approach"],"prefix":"10.1186","volume":"19","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-7803-2331","authenticated-orcid":false,"given":"Feichen","family":"Shen","sequence":"first","affiliation":[]},{"given":"Yiqing","family":"Zhao","sequence":"additional","affiliation":[]},{"given":"Liwei","family":"Wang","sequence":"additional","affiliation":[]},{"given":"Majid Rastegar","family":"Mojarad","sequence":"additional","affiliation":[]},{"given":"Yanshan","family":"Wang","sequence":"additional","affiliation":[]},{"given":"Sijia","family":"Liu","sequence":"additional","affiliation":[]},{"given":"Hongfang","family":"Liu","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2019,2,14]]},"reference":[{"key":"752_CR1","unstructured":"Boat TF, Field MJ. Rare diseases and orphan products: accelerating research and development. Washington, D.C.: National Academies Press; 2011."},{"key":"752_CR2","unstructured":"Survey of the delay in diagnosis for 8 rare diseases in Europe. Available at: https:\/\/wwweurordisorg\/sites\/default\/files\/publicationsFact_Sheet_Eurordiscare2pdf."},{"key":"752_CR3","unstructured":"Rare Diseases Difficult to Diagnose, Cures Hard to Come By. Available at: \n                    https:\/\/news.aamc.org\/research\/article\/rare-diseases-difficult-diagnose-cures-hard-come\/\n                    \n                  ."},{"key":"752_CR4","unstructured":"Phenotype Definition. Available at: \n                    http:\/\/medical-dictionary.thefreedictionary.com\/phenotype\n                    \n                  ."},{"key":"752_CR5","unstructured":"Hodgkin Lymphoma Differential Diagnosis. Available at: \n                    https:\/\/emedicine.medscape.com\/article\/201886-differential\n                    \n                  ."},{"key":"752_CR6","unstructured":"Genetic and Rare Diseases Information Center. Available at: \n                    https:\/\/rarediseases.info.nih.gov\/\n                    \n                  ."},{"key":"752_CR7","doi-asserted-by":"publisher","first-page":"S3","DOI":"10.1016\/S0035-3787(13)70052-3","volume":"169","author":"S Maiella","year":"2013","unstructured":"Maiella S, Rath A, Angin C, Mousson F, Kremp O. Orphanet and its consortium: where to find expert-validated information on rare diseases. Rev Neurol. 2013;169:S3\u20138.","journal-title":"Rev Neurol"},{"issue":"5","key":"752_CR8","doi-asserted-by":"publisher","first-page":"610","DOI":"10.1016\/j.ajhg.2008.09.017","volume":"83","author":"PN Robinson","year":"2008","unstructured":"Robinson PN, K\u00f6hler S, Bauer S, Seelow D, Horn D, Mundlos S. The human phenotype ontology: a tool for annotating and analyzing human hereditary disease. Am J Hum Genet. 2008;83(5):610\u20135.","journal-title":"Am J Hum Genet"},{"key":"752_CR9","first-page":"993","volume":"3","author":"DM Blei","year":"2003","unstructured":"Blei DM, Ng AY, Jordan MI. Latent dirichlet allocation. J Mach Learn Res. 2003;3:993\u20131022.","journal-title":"J Mach Learn Res"},{"issue":"1","key":"752_CR10","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1038\/nrg2918","volume":"12","author":"A-L Barab\u00e1si","year":"2011","unstructured":"Barab\u00e1si A-L, Gulbahce N, Loscalzo J. Network medicine: a network-based approach to human disease. Nat Rev Genet. 2011;12(1):56.","journal-title":"Nat Rev Genet"},{"issue":"1","key":"752_CR11","doi-asserted-by":"publisher","first-page":"e0191568","DOI":"10.1371\/journal.pone.0191568","volume":"13","author":"Y Zhang","year":"2018","unstructured":"Zhang Y, Shen F, Mojarad MR, Li D, Liu S, Tao C, Yu Y, Liu H. Systematic identification of latent disease-gene associations from PubMed articles. PLoS One. 2018;13(1):e0191568.","journal-title":"PLoS One"},{"issue":"5","key":"752_CR12","doi-asserted-by":"publisher","first-page":"678","DOI":"10.1111\/j.1742-4658.2012.08471.x","volume":"279","author":"RM Piro","year":"2012","unstructured":"Piro RM, Di Cunto F. Computational approaches to disease-gene prediction: rationale, classification and successes. FEBS J. 2012;279(5):678\u201396.","journal-title":"FEBS J"},{"issue":"4","key":"752_CR13","doi-asserted-by":"publisher","first-page":"949","DOI":"10.1016\/j.ajhg.2008.02.013","volume":"82","author":"S K\u00f6hler","year":"2008","unstructured":"K\u00f6hler S, Bauer S, Horn D, Robinson PN. Walking the interactome for prioritization of candidate disease genes. Am J Hum Genet. 2008;82(4):949\u201358.","journal-title":"Am J Hum Genet"},{"issue":"17","key":"752_CR14","doi-asserted-by":"publisher","first-page":"2186","DOI":"10.1093\/bioinformatics\/btt359","volume":"29","author":"R Xu","year":"2013","unstructured":"Xu R, Li L, Wang Q. Towards building a disease-phenotype knowledge base: extracting disease-manifestation relationship from literature. Bioinformatics. 2013;29(17):2186\u201394.","journal-title":"Bioinformatics"},{"issue":"1","key":"752_CR15","doi-asserted-by":"publisher","first-page":"85","DOI":"10.1186\/s13023-018-0830-6","volume":"13","author":"N Garcelon","year":"2018","unstructured":"Garcelon N, Neuraz A, Salomon R, Bahi-Buisson N, Amiel J, Picard C, Mahlaoui N, Benoit V, Burgun A, Rance B. Next generation phenotyping using narrative reports in a rare disease clinical data warehouse. Orphanet J Rare Dis. 2018;13(1):85.","journal-title":"Orphanet J Rare Dis"},{"issue":"D1","key":"752_CR16","doi-asserted-by":"publisher","first-page":"D937","DOI":"10.1093\/nar\/gkx1062","volume":"46","author":"J Jia","year":"2017","unstructured":"Jia J, An Z, Ming Y, Guo Y, Li W, Liang Y, Guo D, Li X, Tai J, Chen G. eRAM: encyclopedia of rare disease annotations for precision medicine. Nucleic Acids Res. 2017;46(D1):D937\u201343.","journal-title":"Nucleic Acids Res"},{"key":"752_CR17","volume-title":"Knowledge discovery considering domain Litterature and ontologies: application to rare diseases","author":"M Hassan","year":"2017","unstructured":"Hassan M. Knowledge discovery considering domain Litterature and ontologies: application to rare diseases. Universit\u00e9 de Lorraine: Doctoral dissertation; 2017."},{"issue":"4","key":"752_CR18","doi-asserted-by":"publisher","first-page":"457","DOI":"10.1016\/j.ajhg.2009.09.003","volume":"85","author":"S K\u00f6hler","year":"2009","unstructured":"K\u00f6hler S, Schulz MH, Krawitz P, Bauer S, D\u00f6lken S, Ott CE, Mundlos C, Horn D, Mundlos S, Robinson PN. Clinical diagnostics in human genetics with semantic similarity searches in ontologies. Am J Hum Genet. 2009;85(4):457\u201364.","journal-title":"Am J Hum Genet"},{"issue":"suppl_1","key":"752_CR19","first-page":"D514","volume":"33","author":"A Hamosh","year":"2005","unstructured":"Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA. Online Mendelian inheritance in man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res. 2005;33(suppl_1):D514\u20137.","journal-title":"Nucleic Acids Res"},{"key":"752_CR20","unstructured":"HPO Annotation File. Available at: \n                    http:\/\/compbio.charite.de\/jenkins\/job\/hpo.annotations\/lastStableBuild\/\n                    \n                  ."},{"issue":"suppl_1","key":"752_CR21","doi-asserted-by":"publisher","first-page":"D267","DOI":"10.1093\/nar\/gkh061","volume":"32","author":"O Bodenreider","year":"2004","unstructured":"Bodenreider O. The unified medical language system (UMLS): integrating biomedical terminology. Nucleic Acids Res. 2004;32(suppl_1):D267\u201370.","journal-title":"Nucleic Acids Res"},{"key":"752_CR22","first-page":"1554","volume-title":"AMIA Annual Symposium Proceedings: 2017: American medical informatics association","author":"F Shen","year":"2017","unstructured":"Shen F, Liu S, Wang Y, Wang L, Afzal N, Liu H. Leveraging collaborative filtering to accelerate rare disease diagnosis. In: AMIA Annual Symposium Proceedings: 2017: American medical informatics association; 2017. p. 1554."},{"issue":"4","key":"752_CR23","doi-asserted-by":"publisher","first-page":"e11301","DOI":"10.2196\/11301","volume":"6","author":"F Shen","year":"2018","unstructured":"Shen F, Liu S, Wang Y, Wen A, Wang L, Liu H. Utilization of electronic medical records and biomedical literature to support the diagnosis of rare diseases using data fusion and collaborative filtering approaches. JMIR Med Inform. 2018;6(4):e11301.","journal-title":"JMIR Med Inform"},{"key":"752_CR24","first-page":"69","volume-title":"Proceedings of the third international symposium for semantic mining in biomedicine: 2008","author":"H Kilicoglu","year":"2008","unstructured":"Kilicoglu H, Fiszman M, Rodriguez A, Shin D, Ripple A, Rindflesch TC. Semantic MEDLINE: a web application for managing the results of PubMed searches. In: Proceedings of the third international symposium for semantic mining in biomedicine: 2008; 2008. p. 69\u201376."},{"issue":"1","key":"752_CR25","doi-asserted-by":"publisher","first-page":"486","DOI":"10.1186\/1471-2105-12-486","volume":"12","author":"H Kilicoglu","year":"2011","unstructured":"Kilicoglu H, Rosemblat G, Fiszman M, Rindflesch TC. Constructing a semantic predication gold standard from the biomedical literature. BMC Bioinformatics. 2011;12(1):486.","journal-title":"BMC Bioinformatics"},{"issue":"23","key":"752_CR26","doi-asserted-by":"publisher","first-page":"3158","DOI":"10.1093\/bioinformatics\/bts591","volume":"28","author":"H Kilicoglu","year":"2012","unstructured":"Kilicoglu H, Shin D, Fiszman M, Rosemblat G, Rindflesch TC. SemMedDB: a PubMed-scale repository of biomedical semantic predications. Bioinformatics. 2012;28(23):3158\u201360.","journal-title":"Bioinformatics"},{"issue":"6","key":"752_CR27","doi-asserted-by":"publisher","first-page":"462","DOI":"10.1016\/j.jbi.2003.11.003","volume":"36","author":"TC Rindflesch","year":"2003","unstructured":"Rindflesch TC, Fiszman M. The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. J Biomed Inform. 2003;36(6):462\u201377.","journal-title":"J Biomed Inform"},{"issue":"2","key":"752_CR28","doi-asserted-by":"publisher","first-page":"363","DOI":"10.1016\/j.jbi.2011.11.017","volume":"45","author":"S Mathur","year":"2012","unstructured":"Mathur S, Dinakarpandian D. Finding disease similarity based on implicit semantic similarity. J Biomed Inform. 2012;45(2):363\u201371.","journal-title":"J Biomed Inform"},{"key":"752_CR29","first-page":"487","volume-title":"Proc 20th int conf very large data bases, VLDB: 1994","author":"R Agrawal","year":"1994","unstructured":"Agrawal R, Srikant R. Fast algorithms for mining association rules. In: Proc 20th int conf very large data bases, VLDB: 1994; 1994. p. 487\u201399."},{"key":"752_CR30","volume-title":"Real and complex analysis: Tata McGraw-hill education","author":"W Rudin","year":"2006","unstructured":"Rudin W. Real and complex analysis: Tata McGraw-hill education; 2006."},{"key":"752_CR31","first-page":"581","volume":"245","author":"F Shen","year":"2017","unstructured":"Shen F, Wang L, Liu H. Phenotypic analysis of clinical narratives using human phenotype ontology. Stud Health Technol Inform. 2017;245:581\u20135.","journal-title":"Stud Health Technol Inform"},{"issue":"6","key":"752_CR32","first-page":"1269","volume":"11","author":"J Cornfield","year":"1951","unstructured":"Cornfield J. A method of estimating comparative rates from clinical data. Applications to cancer of the lung, breast, and cervix. J Natl Cancer Inst. 1951;11(6):1269\u201375.","journal-title":"J Natl Cancer Inst"},{"key":"752_CR33","first-page":"1285","volume":"245","author":"F Shen","year":"2017","unstructured":"Shen F, Wang L, Liu H. Using human phenotype ontology for phenotypic analysis of clinical notes. Stud Health Technol Inform. 2017;245:1285.","journal-title":"Stud Health Technol Inform"},{"key":"752_CR34","doi-asserted-by":"crossref","unstructured":"Asratian AS, Denley TM, H\u00e4ggkvist R. Bipartite graphs and their applications, vol. 131. Cambridge: Cambridge University Press; 1998.","DOI":"10.1017\/CBO9780511984068"},{"issue":"3","key":"752_CR35","doi-asserted-by":"publisher","first-page":"227","DOI":"10.1007\/s00787-010-0087-7","volume":"19","author":"M Szumilas","year":"2010","unstructured":"Szumilas M. Explaining odds ratios. J Can Acad Child Adolesc Psychiatry. 2010;19(3):227.","journal-title":"J Can Acad Child Adolesc Psychiatry"},{"issue":"2","key":"752_CR36","doi-asserted-by":"publisher","first-page":"515","DOI":"10.1109\/JBHI.2013.2282125","volume":"18","author":"S Perera","year":"2014","unstructured":"Perera S, Henson C, Thirunarayan K, Sheth A, Nair S. Semantics driven approach for knowledge acquisition from emrs. IEEE J Biomed Health Inform. 2014;18(2):515\u201324.","journal-title":"IEEE J Biomed Health Inform"},{"issue":"1","key":"752_CR37","doi-asserted-by":"publisher","first-page":"187","DOI":"10.1137\/0720013","volume":"20","author":"TF Coleman","year":"1983","unstructured":"Coleman TF, Mor\u00e9 JJ. Estimation of sparse Jacobian matrices and graph coloring blems. SIAM J Numer Anal. 1983;20(1):187\u2013209.","journal-title":"SIAM J Numer Anal"},{"key":"752_CR38","first-page":"173","volume-title":"Graph theory 3rd ed. Graduate texts in mathematics","author":"R Diestel","year":"2005","unstructured":"Diestel R. Graph theory 3rd ed. Graduate texts in mathematics; 2005. p. 173."},{"key":"752_CR39","unstructured":"Hodgkin\u2019s Lymphoma. Available at: \n                    https:\/\/www.mayoclinic.org\/diseases-conditions\/hodgkins-lymphoma\/symptoms-causes\/syc-20352646\n                    \n                  ."},{"key":"752_CR40","unstructured":"What Is B-Cell Lymphoma. Available at: \n                    https:\/\/www.webmd.com\/cancer\/lymphoma\/what-is-b-cell-lymphoma\n                    \n                   - 1."},{"key":"752_CR41","unstructured":"Risk of Diabetes Higher Among Survivors of Hodgkin Lymphoma. Available at: \n                    https:\/\/connection.asco.org\/magazine\/exclusive-coverage\/risk-diabetes-higher-among-survivors-hodgkin-lymphoma\n                    \n                  ."},{"issue":"6","key":"752_CR42","doi-asserted-by":"publisher","first-page":"4139","DOI":"10.3892\/ol.2016.4503","volume":"11","author":"C Huang","year":"2016","unstructured":"Huang C, Zhao G, Wang L, Zhang H, Wu X, Zhang M, Ma R, Wang L, Liu Y, Liu L. Simultaneous occurrence of Hodgkin's lymphoma and multiple myeloma: a case report and review of the literature. Oncol Lett. 2016;11(6):4139\u201343.","journal-title":"Oncol Lett"},{"issue":"751","key":"752_CR43","doi-asserted-by":"publisher","first-page":"395","DOI":"10.1136\/pgmj.64.751.395","volume":"64","author":"W Lynn","year":"1988","unstructured":"Lynn W, Marcus R. Glomerulonephritis preceding late relapse of Hodgkin\u2019s disease. Postgrad Med J. 1988;64(751):395\u20137.","journal-title":"Postgrad Med J"},{"issue":"3","key":"752_CR44","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1093\/jnci\/djj017","volume":"98","author":"SJ Schonfeld","year":"2006","unstructured":"Schonfeld SJ, Gilbert ES, Dores GM, Lynch CF, Hodgson DC, Hall P, Storm H, Andersen A, Pukkala E, Holowaty E. Acute myeloid leukemia following Hodgkin lymphoma: a population-based study of 35 511 patients. J Natl Cancer Inst. 2006;98(3):215\u20138.","journal-title":"J Natl Cancer Inst"},{"key":"752_CR45","doi-asserted-by":"publisher","unstructured":"van Nimwegen FA, Ntentas G, Darby SC, Schaapveld M, Hauptmann M, Lugtenburg PJ, Janus CP, Daniels L, van Leeuwen FE, Cutter DJ. Risk of heart failure in survivors of Hodgkin lymphoma: effects of cardiac exposure to radiation and anthracyclines. Blood. 2017. \n                    https:\/\/doi.org\/10.1182\/blood-2016-09-740332\n                    \n                  .","DOI":"10.1182\/blood-2016-09-740332"},{"issue":"7","key":"752_CR46","doi-asserted-by":"publisher","first-page":"1813","DOI":"10.1093\/annonc\/mdr551","volume":"23","author":"J Schoenfeld","year":"2011","unstructured":"Schoenfeld J, Mauch P, Das P, Silver B, Marcus K, Stevenson M, Ng A. Lung malignancies after Hodgkin lymphoma: disease characteristics, detection methods and clinical outcome. Ann Oncol. 2011;23(7):1813\u20138.","journal-title":"Ann Oncol"},{"issue":"1","key":"752_CR47","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1053\/j.ackd.2013.07.004","volume":"21","author":"RL Luciano","year":"2014","unstructured":"Luciano RL, Brewster UC. Kidney involvement in leukemia and lymphoma. Adv Chronic Kidney Dis. 2014;21(1):27\u201335.","journal-title":"Adv Chronic Kidney Dis"},{"key":"752_CR48","unstructured":"Hospital Medicine-Hodgkins Lymphoma. Available at: \n                    https:\/\/www.cancertherapyadvisor.com\/hospital-medicine\/hodgkins-lymphoma\/article\/601575\/\n                    \n                  ."},{"issue":"1","key":"752_CR49","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1016\/0002-9343(71)90205-1","volume":"50","author":"J Plager","year":"1971","unstructured":"Plager J, Stutzman L. Acute nephrotic syndrome as a manifestation of active Hodgkin's disease: report of four cases and review of the literature. Am J Med. 1971;50(1):56\u201366.","journal-title":"Am J Med"},{"issue":"8","key":"752_CR50","doi-asserted-by":"publisher","first-page":"1057","DOI":"10.1002\/humu.22347","volume":"34","author":"M Girdea","year":"2013","unstructured":"Girdea M, Dumitriu S, Fiume M, Bowdin S, Boycott KM, Ch\u00e9nier S, Chitayat D, Faghfoury H, Meyn MS, Ray PN. PhenoTips: patient phenotyping software for clinical and research use. Hum Mutat. 2013;34(8):1057\u201365.","journal-title":"Hum Mutat"},{"issue":"D1","key":"752_CR51","doi-asserted-by":"publisher","first-page":"D966","DOI":"10.1093\/nar\/gkt1026","volume":"42","author":"S K\u00f6hler","year":"2013","unstructured":"K\u00f6hler S, Doelken SC, Mungall CJ, Bauer S, Firth HV, Bailleul-Forestier I, Black GC, Brown DL, Brudno M, Campbell J. The human phenotype ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res. 2013;42(D1):D966\u201374.","journal-title":"Nucleic Acids Res"},{"issue":"Suppl 1","key":"752_CR52","doi-asserted-by":"publisher","first-page":"O5","DOI":"10.1186\/1750-1172-9-S1-O5","volume":"9","author":"O Winther","year":"2014","unstructured":"Winther O, Svenstrup D, Henningsen PP, Kristi\u00e1sson R, J\u00f8rgensen HL. FindZebra\u2014the search engine for difficult medical cases. Orphanet journal of rare diseases. 2014;9(Suppl 1):O5.","journal-title":"Orphanet journal of rare diseases"},{"issue":"8","key":"752_CR53","doi-asserted-by":"publisher","first-page":"e0160005","DOI":"10.1371\/journal.pone.0160005","volume":"11","author":"F Shen","year":"2016","unstructured":"Shen F, Lee Y. Knowledge discovery from biomedical ontologies in cross domains. PLoS One. 2016;11(8):e0160005.","journal-title":"PLoS One"},{"key":"752_CR54","volume-title":"3rd international conference on educational data mining: 2010","author":"C Romero","year":"2010","unstructured":"Romero C, Romero JR, Luna JM, Ventura S. Mining rare association rules from e-learning data. In: 3rd international conference on educational data mining: 2010; 2010."},{"key":"752_CR55","first-page":"1344","volume":"2","author":"D Hristovski","year":"2001","unstructured":"Hristovski D, Stare J, Peterlin B, Dzeroski S. Supporting discovery in medicine by association rule mining in Medline and UMLS. Stud Health Technol Inform. 2001;2:1344\u20138.","journal-title":"Stud Health Technol Inform"},{"key":"752_CR56","doi-asserted-by":"publisher","first-page":"1092","DOI":"10.1109\/BIBM.2015.7359833","volume-title":"Bioinformatics and Biomedicine (BIBM), 2015 IEEE International Conference on: 2015: IEEE","author":"F Shen","year":"2015","unstructured":"Shen F, Liu H, Sohn S, Larson DW, Lee Y. BmQGen: biomedical query generator for knowledge discovery. In: Bioinformatics and Biomedicine (BIBM), 2015 IEEE International Conference on: 2015: IEEE; 2015. p. 1092\u20137."},{"issue":"4","key":"752_CR57","doi-asserted-by":"publisher","first-page":"267","DOI":"10.1007\/BF02289263","volume":"18","author":"RL Thorndike","year":"1953","unstructured":"Thorndike RL. Who belongs in the family? Psychometrika. 1953;18(4):267\u201376.","journal-title":"Psychometrika"},{"issue":"5","key":"752_CR58","doi-asserted-by":"publisher","first-page":"317","DOI":"10.1007\/BF01074363","volume":"19","author":"DP Spence","year":"1990","unstructured":"Spence DP, Owens KC. Lexical co-occurrence and association strength. J Psycholinguist Res. 1990;19(5):317\u201330.","journal-title":"J Psycholinguist Res"},{"issue":"5","key":"752_CR59","doi-asserted-by":"publisher","first-page":"2014","DOI":"10.1007\/s11227-016-1714-y","volume":"72","author":"E Belyi","year":"2016","unstructured":"Belyi E, Giabbanelli PJ, Patel I, Balabhadrapathruni NH, Abdallah AB, Hameed W, Mago VK. Combining association rule mining and network analysis for pharmacosurveillance. J Supercomput. 2016;72(5):2014\u201334.","journal-title":"J Supercomput"},{"key":"752_CR60","doi-asserted-by":"crossref","unstructured":"Zhu Q, Tao C, Shen F, Chute CG. Exploring the pharmacogenomics knowledge base (pharmgkb) for repositioning breast cancer drugs by leveraging web ontology language (OWL) and cheminformatics approaches. In: Biocomputing 2014. Singapore: World Scientific; 2014. p. 172\u201382.","DOI":"10.1142\/9789814583220_0017"},{"issue":"3","key":"752_CR61","first-page":"66","volume":"8","author":"F Shen","year":"2016","unstructured":"Shen F, Liu H, Sohn S, Larson DW, Lee Y. Predicate oriented pattern analysis for biomedical knowledge discovery. Intell Inf Manag. 2016;8(3):66.","journal-title":"Intell Inf Manag"},{"key":"752_CR62","first-page":"46","volume-title":"Proceedings of the 2010 workshop on biomedical natural language processing: 2010: Association for Computational Linguistics","author":"H Kilicoglu","year":"2010","unstructured":"Kilicoglu H, Fiszman M, Rosemblat G, Marimpietri S, Rindflesch TC. Arguments of nominals in semantic interpretation of biomedical text. In: Proceedings of the 2010 workshop on biomedical natural language processing: 2010: Association for Computational Linguistics; 2010. p. 46\u201354."},{"key":"752_CR63","doi-asserted-by":"publisher","first-page":"72","DOI":"10.1109\/BIBM.2013.6732738","volume-title":"Bioinformatics and Biomedicine (BIBM), 2013 IEEE International Conference on: 2013: IEEE","author":"Y Zhang","year":"2013","unstructured":"Zhang Y, Li D, Tao C, Shen F, Liu H. An integrative computational approach to identify disease-specific networks from PubMed literature information. In: Bioinformatics and Biomedicine (BIBM), 2013 IEEE International Conference on: 2013: IEEE; 2013. p. 72\u20135."},{"key":"752_CR64","first-page":"6535286","volume":"2017","author":"Y Jiang","year":"2017","unstructured":"Jiang Y, Qiu B, Xu C, Li C. The research of clinical decision support system based on three-layer knowledge base model. J Healthc Eng. 2017;2017:6535286.","journal-title":"J Healthc Eng"}],"container-title":["BMC Medical Informatics and Decision Making"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12911-019-0752-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s12911-019-0752-9\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12911-019-0752-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,14]],"date-time":"2020-05-14T15:12:13Z","timestamp":1589469133000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcmedinformdecismak.biomedcentral.com\/articles\/10.1186\/s12911-019-0752-9"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,2,14]]},"references-count":64,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2019,12]]}},"alternative-id":["752"],"URL":"https:\/\/doi.org\/10.1186\/s12911-019-0752-9","relation":{},"ISSN":["1472-6947"],"issn-type":[{"type":"electronic","value":"1472-6947"}],"subject":[],"published":{"date-parts":[[2019,2,14]]},"assertion":[{"value":"13 August 2018","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"1 February 2019","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"14 February 2019","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"This study used existing records to conduct a retrospective study. The study and a waiver of informed consent were approved by Mayo Clinic Institutional Review Board in accordance with 45 CFR 46.116 (Approval #17\u2013003030).","order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"The author(s) declare(s) that the manuscript does not contain any individual person\u2019s data. So this paper requires no consent to publish.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare that they have no competing interests.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}},{"value":"Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Publisher\u2019s Note"}}],"article-number":"32"}}