{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,6,2]],"date-time":"2024-06-02T07:12:21Z","timestamp":1717312341514},"reference-count":40,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2014,9,5]],"date-time":"2014-09-05T00:00:00Z","timestamp":1409875200000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Syst Biol"],"published-print":{"date-parts":[[2014,12]]},"DOI":"10.1186\/s12918-014-0092-4","type":"journal-article","created":{"date-parts":[[2014,9,4]],"date-time":"2014-09-04T23:32:23Z","timestamp":1409873543000},"update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":5,"title":["Sensitivity analysis of biological Boolean networks using information fusion based on nonadditive set functions"],"prefix":"10.1186","volume":"8","author":[{"given":"Naomi","family":"Kochi","sequence":"first","affiliation":[]},{"given":"Tom\u00e1\u0161","family":"Helikar","sequence":"additional","affiliation":[]},{"given":"Laura","family":"Allen","sequence":"additional","affiliation":[]},{"given":"Jim A","family":"Rogers","sequence":"additional","affiliation":[]},{"given":"Zhenyuan","family":"Wang","sequence":"additional","affiliation":[]},{"given":"Mihaela T","family":"Matache","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2014,9,5]]},"reference":[{"issue":"21","key":"92_CR1","doi-asserted-by":"publisher","first-page":"2129","DOI":"10.1056\/NEJMoa040938","volume":"350","author":"TJ Lynch","year":"2004","unstructured":"Lynch TJ, Bell DW, Sordella R, Gurubhagavatula S, Okimoto RA, Brannigan BW, Harris PL, Haserlat SM, Supko JG, Haluska FG, Louis DN, Christiani DC, Settleman J, Haber DA:Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib. N Engl J Med. 2004, 350 (21): 2129-39. 10.1056\/NEJMoa040938.","journal-title":"N Engl J Med"},{"issue":"19","key":"92_CR2","doi-asserted-by":"publisher","first-page":"2009","DOI":"10.2174\/092986707781368423","volume":"14","author":"AM Martelli","year":"2007","unstructured":"Martelli AM, Tazzari PL, Evangelisisti C, Chiarini F, Blalock WL, Billi AM, Manzoli L, McCubrey JA, Cocco L:Targeting the phosphatidylinositol 3-kinase\/Akt\/mammalian target of rapamycin module for acute myelogenous leukemia therapy: from bench to bedside. Curr Med Chem. 2007, 14 (19): 2009-23. 10.2174\/092986707781368423.","journal-title":"Curr Med Chem"},{"issue":"2","key":"92_CR3","doi-asserted-by":"publisher","first-page":"102","DOI":"10.1159\/000327140","volume":"1","author":"L Pulakat","year":"2011","unstructured":"Pulakat L, Demarco VG, Whaley-Connell A, Sowers JR:The impact of overnutrition on insulin metablic signaling in teh heart and the kidney. Cardiorenal Med. 2011, 1 (2): 102-12. 10.1159\/000327140.","journal-title":"Cardiorenal Med"},{"issue":"10","key":"92_CR4","doi-asserted-by":"publisher","first-page":"1366","DOI":"10.1136\/hrt.2005.072280","volume":"91","author":"CP Wheeler-Jones","year":"2005","unstructured":"Wheeler-Jones CP:Cell signaling in the cardiovascular system: an overview. Heart. 2005, 91 (10): 1366-74. 10.1136\/hrt.2005.072280.","journal-title":"Heart"},{"issue":"11-12","key":"92_CR5","doi-asserted-by":"publisher","first-page":"1110","DOI":"10.1002\/bies.20834","volume":"30","author":"HA Kestler","year":"2008","unstructured":"Kestler HA, Wawra C, Kracher B, Kuhl M:Network modeling of signal transduction: establishing the global view. Bioessays. 2008, 30 (11-12): 1110-25. 10.1002\/bies.20834.","journal-title":"Bioessays"},{"issue":"2","key":"92_CR6","doi-asserted-by":"publisher","first-page":"193","DOI":"10.1016\/S0092-8674(00)00112-4","volume":"103","author":"JD Jordan","year":"2000","unstructured":"Jordan JD, Landau EM, Iyengar R:Signaling networks: the origins of cellular multitasking. Cell. 2000, 103 (2): 193-200. 10.1016\/S0092-8674(00)00112-4.","journal-title":"Cell"},{"issue":"6","key":"92_CR7","doi-asserted-by":"publisher","first-page":"1913","DOI":"10.1073\/pnas.0705088105","volume":"105","author":"T Helikar","year":"2008","unstructured":"Helikar T, Konvalina J, Heidel J, Rogers JA:Emergent decision-making in biological signal transduction networks. PNAS. 2008, 105 (6): 1913-18. 10.1073\/pnas.0705088105.","journal-title":"PNAS"},{"key":"92_CR8","doi-asserted-by":"crossref","unstructured":"Calzone L, Tournier L, Fourquet S, Thieffry D, Zhivotovsky B, Barillot E, Zinovyev A: Mathematical modelling of cell-fate decision in response to death receptor engagement. PLoS Comput Biol 2010, 6:e1000702.","DOI":"10.1371\/journal.pcbi.1000702"},{"key":"92_CR9","doi-asserted-by":"crossref","unstructured":"Helikar T, Kochi N, Kowal B, Dimri M, Naramura M, Raja SM, Band V, Band H, Rogers JA: A comprehensive, multi-scale dynamical model of ErbB receptor signal transduction in human mammary epithelial cells. PLoS One 2013, 8:e61757.","DOI":"10.1371\/journal.pone.0061757"},{"key":"92_CR10","doi-asserted-by":"crossref","unstructured":"Naldi A, Carneiro J, Chaouiya C, Thieffry D: Diversity and plasticity of Th cell types predicted from regulatory network modelling. PLoS Comput Biol 2010, 6:e1000912.","DOI":"10.1371\/journal.pcbi.1000912"},{"issue":"6","key":"92_CR11","doi-asserted-by":"publisher","first-page":"858","DOI":"10.1093\/bioinformatics\/bts036","volume":"28","author":"A Rodriguez","year":"2012","unstructured":"Rodriguez A, Sosa D, Torres L, Molina B, Frias S, Mendoza L:A Boolean network model of the FA\/BRCA pathway. Bioinformatics. 2012, 28 (6): 858-866. 10.1093\/bioinformatics\/bts036.","journal-title":"Bioinformatics"},{"key":"92_CR12","doi-asserted-by":"crossref","unstructured":"Saadatpour A, Wang R-S, Liao A, Liu X, Loughran TP, Albert I, Albert R: Dynamical and structural analysis of a T cell survival network identifies novel candidate therapeutic targets for large granular lymphocyte leukemia. PLoS Comput Biol 2011, 7:e1002267.","DOI":"10.1371\/journal.pcbi.1002267"},{"key":"92_CR13","doi-asserted-by":"crossref","unstructured":"Samaga R, Saez-Rodriguez J, Alexopoulos LG, Sorger PK, Klamt S: The logic of EGFR\/ErbB signaling: theoretical properties and analysis of high-throughput data. PLoS Comput Biol 2009, 5:e1000438.","DOI":"10.1371\/journal.pcbi.1000438"},{"key":"92_CR14","doi-asserted-by":"crossref","unstructured":"Sridharan S, Layek R, Datta A, Venkatraj J: Boolean modeling and fault diagnosis in oxidative stress response. BMC Genomics 2012, 13(Suppl 6):S4.","DOI":"10.1186\/1471-2164-13-S6-S4"},{"key":"92_CR15","doi-asserted-by":"crossref","unstructured":"Tokar T, Turcan Z, Ulicny J: Boolean network-based model of the Bcl-2 family mediated MOMP regulation. Theor Biol Med Modell 2013, 10:40.","DOI":"10.1186\/1742-4682-10-40"},{"key":"92_CR16","doi-asserted-by":"crossref","DOI":"10.1093\/oso\/9780195079517.001.0001","volume-title":"The origins of order","author":"SA Kauffman","year":"1993:","unstructured":"Kauffman SA: The origins of order. 1993:, Oxford University Press, New York"},{"key":"92_CR17","doi-asserted-by":"crossref","unstructured":"Klemm K, Bornholdt S: Stable and unstable attractors in Boolean networks. Phys Rev E 2000, 72:055101.","DOI":"10.1103\/PhysRevE.72.055101"},{"key":"92_CR18","doi-asserted-by":"publisher","first-page":"331","DOI":"10.1006\/jtbi.2002.3081","volume":"218","author":"L Raeymaekers","year":"2002","unstructured":"Raeymaekers L:Dynamics of Boolean networks controlled by biologically meaningful functions. J Theor Biol. 2002, 218: 331-41. 10.1006\/jtbi.2002.3081.","journal-title":"J Theor Biol"},{"issue":"2","key":"92_CR19","doi-asserted-by":"publisher","first-page":"261","DOI":"10.1093\/bioinformatics\/18.2.261","volume":"18","author":"I Shmulevich","year":"2001","unstructured":"Shmulevich I, Dougherty ER, Kim S, Zhang W:Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks. Bioinformatics. 2001, 18 (2): 261-274. 10.1093\/bioinformatics\/18.2.261.","journal-title":"Bioinformatics"},{"issue":"10","key":"92_CR20","doi-asserted-by":"publisher","first-page":"1319","DOI":"10.1093\/bioinformatics\/18.10.1319","volume":"18","author":"I Shmulevich","year":"2002","unstructured":"Shmulevich I, Dougherty ER, Zhang W:Gene perturbation and intervention in probabilistic Boolean networks. Bioinformatics. 2002, 18 (10): 1319-1331. 10.1093\/bioinformatics\/18.10.1319.","journal-title":"Bioinformatics"},{"issue":"19","key":"92_CR21","doi-asserted-by":"publisher","first-page":"10734","DOI":"10.1073\/pnas.1534782100","volume":"100","author":"I Shmulevich","year":"2003","unstructured":"Shmulevich I, L\u00e4hdesm\u00e4ki H, Dougherty ER, Astola J, Zhang W:The role of certain Post classes in Boolean network models of genetic networks. PNAS. 2003, 100 (19): 10734-10739. 10.1073\/pnas.1534782100.","journal-title":"PNAS"},{"issue":"3-4","key":"92_CR22","doi-asserted-by":"publisher","first-page":"527","DOI":"10.1023\/A:1015777824097","volume":"108","author":"C Huepe","year":"2002","unstructured":"Huepe C, Aldana-Gonz\u00e1lez M:Dynamical phase transition in a neural network model with noise: an exact solution. J Stat Phys. 2002, 108 (3-4): 527-40. 10.1023\/A:1015777824097.","journal-title":"J Stat Phys"},{"issue":"2","key":"92_CR23","doi-asserted-by":"publisher","first-page":"45","DOI":"10.1209\/0295-5075\/1\/2\/001","volume":"1","author":"B Derrida","year":"1986","unstructured":"Derrida B, Pomeau Y:Random neworks of automata: a simple annealed approximation. Europhys Lett. 1986, 1 (2): 45-6. 10.1209\/0295-5075\/1\/2\/001.","journal-title":"Europhys Lett"},{"issue":"49","key":"92_CR24","doi-asserted-by":"publisher","first-page":"17102","DOI":"10.1073\/pnas.0407783101","volume":"101","author":"S Kauffman","year":"2004","unstructured":"Kauffman S, Peterson C, Samuelsson B, Troein C:Genetic networks with canalyzing Boolean rules are always stable. PNAS. 2004, 101 (49): 17102-7. 10.1073\/pnas.0407783101.","journal-title":"PNAS"},{"issue":"44","key":"92_CR25","doi-asserted-by":"publisher","first-page":"15551","DOI":"10.1073\/pnas.0404843101","volume":"101","author":"LAN Amaral","year":"2004","unstructured":"Amaral LAN, Diaz-Guilera A, Moreira AA, Goldberger AL, Lipsitz LA:Emergence of complex dynamics in a simple model of signaling networks. PNAS. 2004, 101 (44): 15551-15555. 10.1073\/pnas.0404843101.","journal-title":"PNAS"},{"key":"92_CR26","doi-asserted-by":"crossref","unstructured":"Shmulevich I, Kauffman SA: Activities and sensitivities in Boolean network models. Phys Rev Lett 2004, 93(4):048701.","DOI":"10.1103\/PhysRevLett.93.048701"},{"issue":"13","key":"92_CR27","doi-asserted-by":"crossref","first-page":"1393","DOI":"10.3233\/IFS-130825","volume":"26","author":"N Kochi","year":"2014","unstructured":"Kochi N, Wang Z:An algebraic method and a genetic algorithm to the identification of fuzzy measures based on Choquet integrals. J Intell Fuzzy Syst: Appl Eng Technol. 2014, 26 (13): 1393-1400.","journal-title":"J Intell Fuzzy Syst: Appl Eng Technol"},{"key":"92_CR28","doi-asserted-by":"publisher","first-page":"201","DOI":"10.1016\/0165-0114(89)90194-2","volume":"29","author":"T Murofushi","year":"1989","unstructured":"Murofushi T, Sugeno M:An interpretation of fuzzy measure and the Choquet integralas an integral with respect to a fuzzy measure. Fuzzy Sets Syst. 1989, 29: 201-27. 10.1016\/0165-0114(89)90194-2.","journal-title":"Fuzzy Sets Syst"},{"key":"92_CR29","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1016\/0165-0114(94)90008-6","volume":"64","author":"T Murofushi","year":"1994","unstructured":"Murofushi T, Sugeno M, Machida M:Non-monotonic fuzzy measures and the Choquet integral. Fuzzy Sets Syst. 1994, 64: 73-86. 10.1016\/0165-0114(94)90008-6.","journal-title":"Fuzzy Sets Syst"},{"key":"92_CR30","doi-asserted-by":"publisher","DOI":"10.1007\/978-1-4757-5303-5","volume-title":"Fuzzy Measure Theory","author":"Z Wang","year":"1992","unstructured":"Wang Z, Klir GJ: Fuzzy Measure Theory. 1992, Plenum, New York"},{"key":"92_CR31","doi-asserted-by":"crossref","DOI":"10.1142\/6861","volume-title":"Nonlinear Integrals and Their Applications in Data Mining","author":"Z Wang","year":"2010","unstructured":"Wang Z, Yang R, Leung KS: Nonlinear Integrals and Their Applications in Data Mining. 2010, World Scientific, Singapore"},{"key":"92_CR32","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1016\/j.biosystems.2011.12.001","volume":"108","author":"N Kochi","year":"2012","unstructured":"Kochi N, Matache MT:Mean-field boolean network model of a signal transduction network. Biosystems. 2012, 108: 14-27. 10.1016\/j.biosystems.2011.12.001.","journal-title":"Biosystems"},{"key":"92_CR33","doi-asserted-by":"crossref","unstructured":"Helikar T, Kowal B, McClenathan S, Bruckner M, Rowley T, Wicks B, Shrestha M, Limbu K, Rogers JA: The cell collective: toward an open and collaborative approach to systems biology. BMC Syst Biol 2012, 6:96.","DOI":"10.1186\/1752-0509-6-96"},{"key":"92_CR34","doi-asserted-by":"publisher","first-page":"393","DOI":"10.1038\/clpt.2013.41","volume":"93","author":"T Helikar","year":"2013","unstructured":"Helikar T, Kowal B, Rogers JA:A cell simulator platform: the cell collective. Clin Pharmacol Ther. 2013, 93: 393-5. 10.1038\/clpt.2013.41.","journal-title":"Clin Pharmacol Ther"},{"key":"92_CR35","doi-asserted-by":"crossref","unstructured":"Matache MT, Matache V: On the sensitivity to noise of a boolean function. J Math Phys 2009, 50:103512.","DOI":"10.1063\/1.3225563"},{"key":"92_CR36","doi-asserted-by":"publisher","first-page":"346","DOI":"10.1016\/j.molcel.2012.11.023","volume":"49","author":"A Gu\u00e9nol\u00e9","year":"2013","unstructured":"Gu\u00e9nol\u00e9 A, Srivas R, Vreeken K, Wang ZZ, Wang S, Krogan NJ, Ideker T:Dissection of DNA damage responses using multiconditional genetic interaction maps. Mol Cell. 2013, 49: 346-58. 10.1016\/j.molcel.2012.11.023.","journal-title":"Mol Cell"},{"key":"92_CR37","doi-asserted-by":"crossref","unstructured":"Sahin O, Fr\u00f6hlich H, L\u00f6bke C, Korf U, Burmester S, Majety M, Mattern J, Schupp I, Chaouiya C, Thieffry D, Poustka A, Wiemann S, Beissbarth T, Arlt D: Modeling ERBB receptor-regulated G1\/S transition to find novel targets for de novo trastuzumab resistance. BMC Syst Biol 2009, 3:1. doi:10.1186\/1752-0509-3-1.","DOI":"10.1186\/1752-0509-3-1"},{"key":"92_CR38","doi-asserted-by":"crossref","unstructured":"Menden MP, Iorio F, Garnett M, McDermott U, Benes CH, Ballester PJ, Saez-Rodriguez J: Machine learning prediction of cancer cell sensitivity to drugs based on genomic and chemical properties. PLoS one 2013, 8(4):e61318.","DOI":"10.1371\/journal.pone.0061318"},{"key":"92_CR39","doi-asserted-by":"crossref","unstructured":"Jansen K, Matache MT: Phase transition of Boolean networks with partially nested canalizing functions. Eur Phys J B 2013, 86:316.","DOI":"10.1140\/epjb\/e2013-40009-4"},{"issue":"2","key":"92_CR40","doi-asserted-by":"publisher","first-page":"187","DOI":"10.1140\/epjb\/e2010-10559-0","volume":"78","author":"TP Peixoto","year":"2010","unstructured":"Peixoto TP:The phase diagram of random Boolean networks with nested canalizing functions. Eur Phys J B. 2010, 78 (2): 187-192. 10.1140\/epjb\/e2010-10559-0.","journal-title":"Eur Phys J B"}],"container-title":["BMC Systems Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s12918-014-0092-4\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12918-014-0092-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12918-014-0092-4","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12918-014-0092-4.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,6,2]],"date-time":"2024-06-02T06:53:19Z","timestamp":1717311199000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcsystbiol.biomedcentral.com\/articles\/10.1186\/s12918-014-0092-4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,9,5]]},"references-count":40,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2014,12]]}},"alternative-id":["92"],"URL":"https:\/\/doi.org\/10.1186\/s12918-014-0092-4","relation":{},"ISSN":["1752-0509"],"issn-type":[{"value":"1752-0509","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,9,5]]},"assertion":[{"value":"9 October 2013","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"21 July 2014","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"5 September 2014","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"92"}}