{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,8]],"date-time":"2026-01-08T04:12:32Z","timestamp":1767845552372,"version":"3.49.0"},"reference-count":61,"publisher":"Springer Science and Business Media LLC","issue":"1","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Syst Biol"],"published-print":{"date-parts":[[2016,12]]},"DOI":"10.1186\/s12918-016-0275-2","type":"journal-article","created":{"date-parts":[[2016,4,21]],"date-time":"2016-04-21T05:27:26Z","timestamp":1461216446000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":32,"title":["A computational model of invasive aspergillosis in the lung and the role of iron"],"prefix":"10.1186","volume":"10","author":[{"given":"Matthew","family":"Oremland","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kathryn R.","family":"Michels","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alexandra M.","family":"Bettina","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Chris","family":"Lawrence","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Borna","family":"Mehrad","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Reinhard","family":"Laubenbacher","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2016,4,21]]},"reference":[{"issue":"5","key":"275_CR1","doi-asserted-by":"crossref","first-page":"453","DOI":"10.1016\/j.jinf.2012.08.003","volume":"65","author":"WJ Steinbach","year":"2012","unstructured":"Steinbach WJ, Marr KA, Anaissie EJ, Azie N, Quan SP, Meier-Kriesche HU, Apewokin S, Horn DL. Clinical epidemiology of 960 patients with invasive aspergillosis from the PATH Alliance registry. J Infect. 2012; 65(5):453\u201364.","journal-title":"J Infect"},{"issue":"2","key":"275_CR2","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1016\/S0761-8425(08)71512-2","volume":"25","author":"JP Gangneux","year":"2008","unstructured":"Gangneux JP, Camus C, Philippe B. [Epidemiology of and risk factors for invasive aspergillosis in nonneutropenic patients]. Rev Mal Respir. 2008; 25(2):139\u201353.","journal-title":"Rev Mal Respir"},{"key":"275_CR3","doi-asserted-by":"crossref","first-page":"864","DOI":"10.2471\/BLT.11.089441","volume":"89","author":"DW Denning","year":"2011","unstructured":"Denning DW, Pleuvry A, Cole DC. Global burden of chronic pulmonary aspergillosis as a sequel to pulmonary tuberculosis. Bull World Health Organ. 2011; 89:864\u201372.","journal-title":"Bull World Health Organ"},{"issue":"6","key":"275_CR4","doi-asserted-by":"crossref","first-page":"408","DOI":"10.1056\/NEJMoa020191","volume":"347","author":"R Herbrecht","year":"2002","unstructured":"Herbrecht R, Denning DW, Patterson TF, Bennett JE, Greene RE, Oestmann JW, Kern WV, Marr KA, Ribaud P, Lortholary O, Sylvester R, Rubin RH, Wingard JR, Stark P, Durand C, Caillot D, Thiel E, Chandrasekar PH, Hodges MR, Schlamm HT, Troke PF, de Pauw B. Voriconazole versus amphotericin B for primary therapy of invasive aspergillosis. N Engl J Med. 2002; 347(6):408\u201315.","journal-title":"N Engl J Med"},{"issue":"2","key":"275_CR5","doi-asserted-by":"crossref","first-page":"131","DOI":"10.1007\/s11046-012-9526-y","volume":"174","author":"I Hadrich","year":"2012","unstructured":"Hadrich I, Makni F, Neji S, Abbes S, Cheikhrouhou F, Trabelsi H, Sellami H, Ayadi A. Invasive aspergillosis: resistance to antifungal drugs. Mycopathologia. 2012; 174(2):131\u201341.","journal-title":"Mycopathologia"},{"issue":"3","key":"275_CR6","doi-asserted-by":"crossref","first-page":"1402","DOI":"10.1128\/IAI.72.3.1402-1408.2004","volume":"72","author":"AH Hissen","year":"2004","unstructured":"Hissen AH, Chow JM, Pinto LJ, Moore MM. Survival of Aspergillus fumigatus in serum involves removal of iron from transferrin: the role of siderophores. Infect Immun. 2004; 72(3):1402\u20138.","journal-title":"Infect Immun"},{"issue":"9-10","key":"275_CR7","doi-asserted-by":"crossref","first-page":"767","DOI":"10.1016\/j.imbio.2008.07.010","volume":"213","author":"M Seifert","year":"2008","unstructured":"Seifert M, Nairz M, Schroll A, Schrettl M, Haas H, Weiss G. Effects of the Aspergillus fumigatus siderophore systems on the regulation of macrophage immune effector pathways and iron homeostasis. Immunobiology. 2008; 213(9-10):767\u201378.","journal-title":"Immunobiology"},{"issue":"10","key":"275_CR8","doi-asserted-by":"crossref","first-page":"6367","DOI":"10.4049\/jimmunol.178.10.6367","volume":"178","author":"KA Zarember","year":"2007","unstructured":"Zarember KA, Sugui JA, Chang YC, Kwon-Chung KJ, Gallin JI. Human polymorphonuclear leukocytes inhibit Aspergillus fumigatus conidial growth by lactoferrin-mediated iron depletion. J Immunol. 2007; 178(10):6367\u201373.","journal-title":"J Immunol"},{"issue":"9","key":"275_CR9","doi-asserted-by":"crossref","first-page":"1213","DOI":"10.1084\/jem.20041242","volume":"200","author":"M Schrettl","year":"2004","unstructured":"Schrettl M, Bignell E, Kragl C, Joechl C, Rogers T, Arst HN, Haynes K, Haas H. Siderophore biosynthesis but not reductive iron assimilation is essential for Aspergillus fumigatus virulence. J Exp Med. 2004; 200(9):1213\u20139.","journal-title":"J Exp Med"},{"issue":"2","key":"275_CR10","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1093\/jac\/dkp426","volume":"65","author":"AS Ibrahim","year":"2010","unstructured":"Ibrahim AS, Gebremariam T, French SW, Edwards JE, Spellberg B. The iron chelator deferasirox enhances liposomal amphotericin B efficacy in treating murine invasive pulmonary aspergillosis. J Antimicrob Chemother. 2010; 65(2):289\u201392.","journal-title":"J Antimicrob Chemother"},{"issue":"6","key":"275_CR11","doi-asserted-by":"crossref","first-page":"1303","DOI":"10.1002\/cncr.22909","volume":"110","author":"DP Kontoyiannis","year":"2007","unstructured":"Kontoyiannis DP, Chamilos G, Lewis RE, Giralt S, Cortes J, Raad II, Manning JT, Han X. Increased bone marrow iron stores is an independent risk factor for invasive aspergillosis in patients with high-risk hematologic malignancies and recipients of allogeneic hematopoietic stem cell transplantation. Cancer. 2007; 110(6):1303\u20136.","journal-title":"Cancer"},{"issue":"6","key":"275_CR12","doi-asserted-by":"crossref","first-page":"505","DOI":"10.1038\/sj.bmt.1704628","volume":"34","author":"A Altes","year":"2004","unstructured":"Altes A, Remacha AF, Sarda P, Sancho FJ, Sureda A, Martino R, Briones J, Brunet S, Canals C, Sierra J. Frequent severe liver iron overload after stem cell transplantation and its possible association with invasive aspergillosis. Bone Marrow Transplant. 2004; 34(6):505\u20139.","journal-title":"Bone Marrow Transplant"},{"issue":"5","key":"275_CR13","doi-asserted-by":"crossref","first-page":"436","DOI":"10.1016\/j.ijmm.2011.04.012","volume":"301","author":"M Hasenberg","year":"2011","unstructured":"Hasenberg M, Behnsen J, Krappmann S, Brakhage A, Gunzer M. Phagocyte responses towards Aspergillus fumigatus. Int J Med Microbiol. 2011; 301(5):436\u201344.","journal-title":"Int J Med Microbiol"},{"issue":"10","key":"275_CR14","doi-asserted-by":"crossref","first-page":"2755","DOI":"10.1007\/s10096-012-1624-8","volume":"31","author":"WK Sun","year":"2012","unstructured":"Sun WK, Lu X, Li X, Sun QY, Su X, Song Y, Sun HM, Shi Y. Dectin-1 is inducible and plays a crucial role in Aspergillus-induced innate immune responses in human bronchial epithelial cells. Eur J Clin Microbiol Infect Dis. 2012; 31(10):2755\u2013764.","journal-title":"Eur J Clin Microbiol Infect Dis"},{"issue":"4","key":"275_CR15","doi-asserted-by":"crossref","first-page":"535","DOI":"10.1128\/CMR.00014-09","volume":"22","author":"SJ Park","year":"2009","unstructured":"Park SJ, Mehrad B. Innate immunity to Aspergillus species. Clin Microbiol Rev. 2009; 22(4):535\u201351.","journal-title":"Clin Microbiol Rev"},{"issue":"12-13","key":"275_CR16","doi-asserted-by":"crossref","first-page":"1035","DOI":"10.1016\/j.micinf.2010.07.005","volume":"12","author":"M Schrettl","year":"2010","unstructured":"Schrettl M, Ibrahim-Granet O, Droin S, Huerre M, Latge JP, Haas H. The crucial role of the Aspergillus fumigatus siderophore system in interaction with alveolar macrophages. Microbes Infect. 2010; 12(12-13):1035\u201341.","journal-title":"Microbes Infect"},{"issue":"2","key":"275_CR17","doi-asserted-by":"crossref","first-page":"120","DOI":"10.1111\/j.1469-0691.2011.03681.x","volume":"18","author":"A Carvalho","year":"2012","unstructured":"Carvalho A, Cunha C, Bistoni F, Romani L. Immunotherapy of aspergillosis. Clin Microbiol Infect. 2012; 18(2):120\u20135.","journal-title":"Clin Microbiol Infect"},{"key":"275_CR18","doi-asserted-by":"crossref","first-page":"176","DOI":"10.3389\/fmicb.2012.00176","volume":"3","author":"A Carvalho","year":"2012","unstructured":"Carvalho A, Cunha C, Iannitti RG, Casagrande A, Bistoni F, Aversa F, Romani L. Host defense pathways against fungi: the basis for vaccines and immunotherapy. Front Microbiol. 2012; 3:176.","journal-title":"Front Microbiol"},{"key":"275_CR19","doi-asserted-by":"crossref","first-page":"108","DOI":"10.3389\/fmicb.2012.00108","volume":"3","author":"F Horn","year":"2012","unstructured":"Horn F, Heinekamp T, Kniemeyer O, Pollmacher J, Valiante V, Brakhage AA. Systems biology of fungal infection. Front Microbiol. 2012; 3:108.","journal-title":"Front Microbiol"},{"issue":"5","key":"275_CR20","doi-asserted-by":"crossref","first-page":"453","DOI":"10.1016\/j.ijmm.2011.04.014","volume":"301","author":"D Albrecht","year":"2011","unstructured":"Albrecht D, Kniemeyer O, Mech F, Gunzer M, Brakhage A, Guthke R. On the way toward systems biology of Aspergillus fumigatus infection. Int J Med Microbiol. 2011; 301(5):453\u20139.","journal-title":"Int J Med Microbiol"},{"key":"275_CR21","doi-asserted-by":"crossref","first-page":"6","DOI":"10.1186\/1752-0509-6-6","volume":"6","author":"J Linde","year":"2012","unstructured":"Linde J, Hortschansky P, Fazius E, Brakhage AA, Guthke R, Haas H. Regulatory interactions for iron homeostasis in Aspergillus fumigatus inferred by a Systems Biology approach. BMC Syst Biol. 2012; 6:6.","journal-title":"BMC Syst Biol"},{"issue":"12","key":"275_CR22","doi-asserted-by":"crossref","first-page":"589","DOI":"10.1016\/j.it.2008.08.006","volume":"29","author":"AK Chavali","year":"2008","unstructured":"Chavali AK, Gianchandani EP, Tung KS, Lawrence MB, Peirce SM, Papin JA. Characterizing emergent properties of immunological systems with multi-cellular rule-based computational modeling. Trends Immunol. 2008; 29(12):589\u201399.","journal-title":"Trends Immunol"},{"issue":"10","key":"275_CR23","doi-asserted-by":"crossref","first-page":"1379","DOI":"10.1016\/j.ins.2008.11.012","volume":"179","author":"AL Bauer","year":"2009","unstructured":"Bauer AL, Beauchemin CA, Perelson AS. Agent-based modeling of host-pathogen systems: The successes and challenges. Inf Sci (Ny). 2009; 179(10):1379\u201389.","journal-title":"Inf Sci (Ny)"},{"issue":"4","key":"275_CR24","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1615\/CritRevBiomedEng.v39.i4.50","volume":"39","author":"M Tawhai","year":"2011","unstructured":"Tawhai M, Clark A, Donovan G, Burrowes K. Computational modeling of airway and pulmonary vascular structure and function: development of a \u201clung physiome\u201d. Crit Rev Biomed Eng. 2011; 39(4):319\u201336.","journal-title":"Crit Rev Biomed Eng"},{"key":"275_CR25","doi-asserted-by":"crossref","first-page":"191","DOI":"10.3389\/fphys.2012.00191","volume":"3","author":"AM Lauzon","year":"2012","unstructured":"Lauzon AM, Bates JH, Donovan G, Tawhai M, Sneyd J, Sanderson MJ. A multi-scale approach to airway hyperresponsiveness: from molecule to organ. Front Physiol. 2012; 3:191.","journal-title":"Front Physiol"},{"key":"275_CR26","doi-asserted-by":"crossref","first-page":"411","DOI":"10.3389\/fmicb.2015.00411","volume":"6","author":"A Oliveira-Coelho","year":"2015","unstructured":"Oliveira-Coelho A, Rodrigues F, Campos A, Lacerda JF, Carvalho A, Cunha C. Paving the way for predictive diagnostics and personalized treatment of invasive aspergillosis. Front Microbiol. 2015; 6:411.","journal-title":"Front Microbiol"},{"key":"275_CR27","doi-asserted-by":"crossref","first-page":"129","DOI":"10.3389\/fmicb.2012.00129","volume":"3","author":"C Tokarski","year":"2012","unstructured":"Tokarski C, Hummert S, Mech F, Figge MT, Germerodt S, Schroeter A, Schuster S. Agent-based modeling approach of immune defense against spores of opportunistic human pathogenic fungi. Front Microbiol. 2012; 3:129.","journal-title":"Front Microbiol"},{"issue":"10","key":"275_CR28","doi-asserted-by":"crossref","first-page":"111630","DOI":"10.1371\/journal.pone.0111630","volume":"9","author":"J Pollm\u00e4cher","year":"2014","unstructured":"Pollm\u00e4cher J, Figge MT. Agent-based model of human alveoli predicts chemotactic signaling by epithelial cells during early Aspergillus fumigatus infection. PLoS ONE. 2014; 9(10):111630.","journal-title":"PLoS ONE"},{"key":"275_CR29","doi-asserted-by":"crossref","unstructured":"Pollm\u00e4cher J, Figge MT. Deciphering chemokine properties by an agent-based model of Aspergillus fumigatus infection in human alveoli. Front Microbiol. 2015; 6(503). doi: http:\/\/dx.doi.org\/10.3389\/fmicb.2015.00503 .","DOI":"10.3389\/fmicb.2015.00503"},{"key":"275_CR30","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1186\/1742-4682-4-50","volume":"4","author":"Z Wang","year":"2007","unstructured":"Wang Z, Zhang L, Sagotsky J, Deisboeck TS. Simulating non-small cell lung cancer with a multiscale agent-based model. Theor Biol Med Model. 2007; 4:50.","journal-title":"Theor Biol Med Model"},{"key":"275_CR31","volume-title":"Artificial Immune Systems: Lecture Notes in Computer Science","author":"M Pennisi","year":"2009","unstructured":"Pennisi M, Pappalardo F, Motta S. Agent based modeling of lung metastasis-immune system competition In: Andrews PS, Timmis J, Owens NDL, Aickelin U, Hart E, Hone A, Tyrrell AM, editors. Artificial Immune Systems: Lecture Notes in Computer Science. Berlin: Springer: 2009. p. 1\u20133."},{"issue":"2","key":"275_CR32","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1016\/j.mbs.2011.03.005","volume":"231","author":"BN Brown","year":"2011","unstructured":"Brown BN, Price IM, Toapanta FR, DeAlmeida DR, Wiley CA, Ross TM, Oury TD, Vodovotz Y. An agent-based model of inflammation and fibrosis following particulate exposure in the lung. Math Biosci. 2011; 231(2):186\u201396.","journal-title":"Math Biosci"},{"issue":"1","key":"275_CR33","doi-asserted-by":"crossref","first-page":"106","DOI":"10.1016\/j.jtbi.2011.01.052","volume":"276","author":"AM Smith","year":"2011","unstructured":"Smith AM, McCullers JA, Adler FR. Mathematical model of a three-stage innate immune response to a pneumococcal lung infection. J Theor Biol. 2011; 276(1):106\u201316.","journal-title":"J Theor Biol"},{"issue":"3","key":"275_CR34","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1016\/j.jtbi.2004.06.031","volume":"231","author":"JL Segovia-Juarez","year":"2004","unstructured":"Segovia-Juarez JL, Ganguli S, Kirschner D. Identifying control mechanisms of granuloma formation during m. tuberculosis infection using an agent-based model. J Theor Biol. 2004; 231(3):357\u201376. doi: http:\/\/dx.doi.org\/10.1016\/j.jtbi.2004.06.031 .","journal-title":"J Theor Biol"},{"key":"275_CR35","doi-asserted-by":"crossref","first-page":"166","DOI":"10.1016\/j.jtbi.2014.11.021","volume":"367","author":"E Pienaar","year":"2015","unstructured":"Pienaar E, Cilfone NA, Lin PL, Dartois V, Mattila JT, Butler JR, Flynn JL, Kirschner DE, Linderman JJ. A computational tool integrating host immunity with antibiotic dynamics to study tuberculosis treatment. J Theor Biol. 2015; 367:166\u201379. doi: http:\/\/dx.doi.org\/10.1016\/j.jtbi.2014.11.021 .","journal-title":"J Theor Biol"},{"key":"275_CR36","doi-asserted-by":"crossref","unstructured":"Meier-Schellersheim M, Xu X, Angermann B, Kunkel EJ, Jin T, Germain RN. (2006) Key Role of Local Regulation in Chemosensing Revealed by a New Molecular Interaction-Based Modeling Method. PLoS Comput Biol; 2(7):e82. doi: http:\/\/dx.doi.org\/10.1371\/journal.pcbi.0020082 .","DOI":"10.1371\/journal.pcbi.0020082"},{"key":"275_CR37","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1186\/1742-4682-4-39","volume":"4","author":"VA Folcik","year":"2007","unstructured":"Folcik VA, An GC, Orosz CG. The Basic Immune Simulator: an agent-based model to study the interactions between innate and adaptive immunity. Theor Biol Med Model. 2007; 4:39.","journal-title":"Theor Biol Med Model"},{"key":"275_CR38","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1504\/IJBRA.2006.009194","volume":"2","author":"JK Kalita","year":"2006","unstructured":"Kalita JK, Chandrashekar K, Hans R, Selvam P. Computational modelling and simulation of the immune system. Int J Bioinform Res Appl. 2006; 2:63\u201388.","journal-title":"Int J Bioinform Res Appl"},{"key":"275_CR39","unstructured":"Castiglione F. C-ImmSim Simulator. Institute for Computing Applications, National Research Council (CNR) of Italy. 1995. http:\/\/www.iac.cnr.it\/~filippo\/c-immsim\/ . Accessed 18 Apr 2016."},{"issue":"3","key":"275_CR40","doi-asserted-by":"crossref","first-page":"527","DOI":"10.1142\/S0129183197000424","volume":"8","author":"F Castiglione","year":"1997","unstructured":"Castiglione F, Bernaschi M, Succi S. Simulating the immune response on a distributed parallel computer. Int J Mod Phys C. 1997; 8(3):527\u201345.","journal-title":"Int J Mod Phys C"},{"key":"275_CR41","doi-asserted-by":"crossref","first-page":"303","DOI":"10.1016\/S0010-4825(01)00011-7","volume":"31","author":"M Bernaschi","year":"2001","unstructured":"Bernaschi M, Castiglione F. Design and implementation of an immune system simulator. Comput Biol Med. 2001; 31:303\u201331.","journal-title":"Comput Biol Med"},{"issue":"11","key":"275_CR42","doi-asserted-by":"crossref","first-page":"6086","DOI":"10.4049\/jimmunol.163.11.6086","volume":"163","author":"B Mehrad","year":"1999","unstructured":"Mehrad B, Strieter RM, Moore TA, Tsai WC, Lira SA, Standiford TJ. CXC chemokine receptor-2 ligands are necessary components of neutrophil-mediated host defense in invasive pulmonary aspergillosis. J Immunol. 1999; 163(11):6086\u201394.","journal-title":"J Immunol"},{"issue":"7","key":"275_CR43","doi-asserted-by":"crossref","first-page":"4306","DOI":"10.4049\/jimmunol.0803462","volume":"182","author":"SJ Park","year":"2009","unstructured":"Park SJ, Hughes MA, Burdick M, Strieter RM, Mehrad B. Early NK cell-derived IFN-gamma is essential to host defense in neutropenic invasive aspergillosis. J Immunol. 2009; 182(7):4306\u201312.","journal-title":"J Immunol"},{"issue":"11","key":"275_CR44","doi-asserted-by":"crossref","first-page":"1165","DOI":"10.1164\/rccm.200602-256OC","volume":"175","author":"AP Phadke","year":"2007","unstructured":"Phadke AP, Akangire G, Park SJ, Lira SA, Mehrad B. The role of CC chemokine receptor 6 in host defense in a model of invasive pulmonary aspergillosis. Am J Respir Crit Care Med. 2007; 175(11):1165\u201372.","journal-title":"Am J Respir Crit Care Med"},{"issue":"4","key":"275_CR45","doi-asserted-by":"crossref","first-page":"2538","DOI":"10.4049\/jimmunol.176.4.2538","volume":"176","author":"SJ Park","year":"2006","unstructured":"Park SJ, Wiekowski MT, Lira SA, Mehrad B. Neutrophils regulate airway responses in a model of fungal allergic airways disease. J Immunol. 2006; 176(4):2538\u201345.","journal-title":"J Immunol"},{"issue":"5","key":"275_CR46","doi-asserted-by":"crossref","first-page":"3233","DOI":"10.4049\/jimmunol.176.5.3233","volume":"176","author":"B Mehrad","year":"2006","unstructured":"Mehrad B, Park SJ, Akangire G, Standiford TJ, Wu T, Zhu J, Mohan C. The lupus-susceptibility locus, Sle3, mediates enhanced resistance to bacterial infections. J Immunol. 2006; 176(5):3233\u20139.","journal-title":"J Immunol"},{"issue":"10","key":"275_CR47","doi-asserted-by":"crossref","first-page":"6190","DOI":"10.4049\/jimmunol.1002064","volume":"185","author":"SJ Park","year":"2010","unstructured":"Park SJ, Burdick MD, Brix WK, Stoler MH, Askew DS, Strieter RM, Mehrad B. Neutropenia enhances lung dendritic cell recruitment in response to Aspergillus via a cytokine-to-chemokine amplification loop. J Immunol. 2010; 185(10):6190\u20137.","journal-title":"J Immunol"},{"issue":"10","key":"275_CR48","doi-asserted-by":"crossref","first-page":"702","DOI":"10.1152\/ajplung.00194.2013","volume":"305","author":"L Chen","year":"2013","unstructured":"Chen L, Zhang Z, Barletta KE, Burdick MD, Mehrad B. Heterogeneity of lung mononuclear phagocytes during pneumonia: contribution of chemokine receptors. Am J Physiol Lung Cell Mol Physiol. 2013; 305(10):702\u201311.","journal-title":"Am J Physiol Lung Cell Mol Physiol"},{"issue":"1-2","key":"275_CR49","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1016\/j.jim.2011.09.013","volume":"375","author":"KE Barletta","year":"2012","unstructured":"Barletta KE, Cagnina RE, Wallace KL, Ramos SI, Mehrad B, Linden J. Leukocyte compartments in the mouse lung: distinguishing between marginated, interstitial, and alveolar cells in response to injury. J Immunol Methods. 2012; 375(1-2):100\u201310.","journal-title":"J Immunol Methods"},{"issue":"5","key":"275_CR50","doi-asserted-by":"crossref","first-page":"987","DOI":"10.1128\/IAI.12.5.987-992.1975","volume":"12","author":"PF Lehmann","year":"1975","unstructured":"Lehmann PF, White LO. Chitin assay used to demonstrate renal localization and cortisone-enhanced growth of Aspergillus fumigatus mycelium in mice. Infect Immun. 1975; 12(5):987\u201392.","journal-title":"Infect Immun"},{"issue":"7","key":"275_CR51","doi-asserted-by":"crossref","first-page":"4609","DOI":"10.4049\/jimmunol.0900345","volume":"183","author":"C D\u2019Angelo","year":"2009","unstructured":"D\u2019Angelo C, De Luca A, Zelante T, Bonifazi P, Moretti S, Giovannini G, Iannitti RG, Zagarella S, Bozza S, Campo S, Salvatori G, Romani L. Exogenous pentraxin 3 restores antifungal resistance and restrains inflammation in murine chronic granulomatous disease. J Immunol. 2009; 183(7):4609\u201318.","journal-title":"J Immunol"},{"issue":"8","key":"275_CR52","doi-asserted-by":"crossref","first-page":"5171","DOI":"10.4049\/jimmunol.0901027","volume":"183","author":"AJ Hartigan","year":"2009","unstructured":"Hartigan AJ, Westwick J, Jarai G, Hogaboam CM. CCR7 deficiency on dendritic cells enhances fungal clearance in a murine model of pulmonary invasive aspergillosis. J Immunol. 2009; 183(8):5171\u20139.","journal-title":"J Immunol"},{"issue":"4","key":"275_CR53","doi-asserted-by":"crossref","first-page":"793","DOI":"10.1084\/jem.20061301","volume":"204","author":"S Jaillon","year":"2007","unstructured":"Jaillon S, Peri G, Delneste Y, Fremaux I, Doni A, Moalli F, Garlanda C, Romani L, Gascan H, Bellocchio S, Bozza S, Cassatella MA, Jeannin P, Mantovani A. The humoral pattern recognition receptor PTX3 is stored in neutrophil granules and localizes in extracellular traps. J Exp Med. 2007; 204(4):793\u2013804.","journal-title":"J Exp Med"},{"issue":"1","key":"275_CR54","doi-asserted-by":"crossref","first-page":"114","DOI":"10.1128\/IAI.73.1.114-125.2005","volume":"73","author":"SD Stephens-Romero","year":"2005","unstructured":"Stephens-Romero SD, Mednick AJ, Feldmesser M. The pathogenesis of fatal outcome in murine pulmonary aspergillosis depends on the neutrophil depletion strategy. Infect Immun. 2005; 73(1):114\u201325.","journal-title":"Infect Immun"},{"issue":"2","key":"275_CR55","doi-asserted-by":"crossref","first-page":"370","DOI":"10.1016\/j.ab.2004.03.049","volume":"331","author":"J Riemer","year":"2004","unstructured":"Riemer J, Hoepken HH, Czerwinska H, Robinson SR, Dringen R. Colorimetric ferrozine-based assay for the quantitation of iron in cultured cells. Anal Biochem. 2004; 331(2):370\u20135.","journal-title":"Anal Biochem"},{"key":"275_CR56","unstructured":"Wilensky U. NetLogo. Center for Connected Learning and Computer-Based Modeling. 2009. http:\/\/ccl.northwestern.edu\/netlogo\/ ."},{"issue":"1","key":"275_CR57","doi-asserted-by":"crossref","first-page":"127","DOI":"10.1183\/09031936.95.08010127","volume":"8","author":"AB Thompson","year":"1995","unstructured":"Thompson AB, Robbins RA, Romberger DJ, Sisson JH, Spurzem JR, Teschler H, Rennard SI. Immunological functions of the pulmonary epithelium. Eur Respir J. 1995; 8(1):127\u201349.","journal-title":"Eur Respir J"},{"issue":"6","key":"275_CR58","doi-asserted-by":"crossref","first-page":"3156","DOI":"10.1128\/IAI.70.6.3156-3163.2002","volume":"70","author":"JA Wasylnka","year":"2002","unstructured":"Wasylnka JA, Moore MM. Uptake of Aspergillus fumigatus Conidia by phagocytic and nonphagocytic cells in vitro: quantitation using strains expressing green fluorescent protein. Infect Immun. 2002; 70(6):3156\u201363.","journal-title":"Infect Immun"},{"issue":"2","key":"275_CR59","doi-asserted-by":"crossref","first-page":"1003940","DOI":"10.1371\/journal.ppat.1003940","volume":"10","author":"V Espinosa","year":"2014","unstructured":"Espinosa V, Jhingran A, Dutta O, Kasahara S, Donnelly R, Du P, Rosenfeld J, Leiner I, Chen CC, Ron Y, Hohl TM, Rivera A. Inflammatory monocytes orchestrate innate antifungal immunity in the lung. PLoS Pathog. 2014; 10(2):1003940.","journal-title":"PLoS Pathog"},{"issue":"3","key":"275_CR60","doi-asserted-by":"crossref","first-page":"447","DOI":"10.1128\/CMR.00055-08","volume":"22","author":"TR Dagenais","year":"2009","unstructured":"Dagenais TR, Keller NP. Pathogenesis of Aspergillus fumigatus in Invasive Aspergillosis. Clin Microbiol Rev. 2009; 22(3):447\u201365.","journal-title":"Clin Microbiol Rev"},{"key":"275_CR61","volume-title":"Wheater\u2019s Basic Histopathology: A Color Atlas and Text (Wheater\u2019s Histology and Pathology)","author":"A Stevens","year":"2002","unstructured":"Stevens A, Lowe JS, Young B. Wheater\u2019s Basic Histopathology: A Color Atlas and Text (Wheater\u2019s Histology and Pathology), 4th edn. London: Churchill Livingstone; 2002."}],"container-title":["BMC Systems Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12918-016-0275-2","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,8,17]],"date-time":"2023-08-17T18:33:13Z","timestamp":1692297193000},"score":1,"resource":{"primary":{"URL":"http:\/\/bmcsystbiol.biomedcentral.com\/articles\/10.1186\/s12918-016-0275-2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,4,21]]},"references-count":61,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2016,12]]}},"alternative-id":["275"],"URL":"https:\/\/doi.org\/10.1186\/s12918-016-0275-2","relation":{},"ISSN":["1752-0509"],"issn-type":[{"value":"1752-0509","type":"electronic"}],"subject":[],"published":{"date-parts":[[2016,4,21]]},"article-number":"34"}}