{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,5,27]],"date-time":"2025-05-27T19:46:04Z","timestamp":1748375164201},"reference-count":23,"publisher":"Springer Science and Business Media LLC","issue":"1","content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["J Biomed Semant"],"published-print":{"date-parts":[[2016,12]]},"DOI":"10.1186\/s13326-016-0070-4","type":"journal-article","created":{"date-parts":[[2016,5,11]],"date-time":"2016-05-11T11:51:48Z","timestamp":1462967508000},"update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification"],"prefix":"10.1186","volume":"7","author":[{"given":"Farrokh","family":"Mehryary","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Suwisa","family":"Kaewphan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kai","family":"Hakala","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Filip","family":"Ginter","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2016,5,11]]},"reference":[{"key":"70_CR1","first-page":"W518,W522","volume":"41","author":"CH Wei","year":"2013","unstructured":"Wei CH, Kao HY, Lu Z. PubTator: a web-based text mining tool for assisting biocuration. Nucleic Acids Res. 2013; 41:W518,W522.","journal-title":"Nucleic Acids Res"},{"issue":"D1","key":"70_CR2","doi-asserted-by":"crossref","first-page":"447","DOI":"10.1093\/nar\/gku1003","volume":"43","author":"D Szklarczyk","year":"2015","unstructured":"Szklarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, Huerta-Cepas J, Simonovic M, Roth A, Santos A, Tsafou KP, Kuhn M, Bork P, Jensen LJ, von Mering C. STRING v10: protein-protein interaction networks, integrated over the tree of life. Nucleic Acids Res. 2015; 43(D1):447\u201352.","journal-title":"Nucleic Acids Res"},{"key":"70_CR3","volume-title":"Proceedings of the 5th International Symposium on Languages in Biology and Medicine (LBM\u201913)","author":"K Hakala","year":"2013","unstructured":"Hakala K, Mehryary F, Kaewphan S, Ginter F. Hypothesis generation in large-scale event networks. In: Proceedings of the 5th International Symposium on Languages in Biology and Medicine (LBM\u201913). Tokyo: Database Center for Life Science: 2013."},{"key":"70_CR4","volume-title":"Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task","author":"JD Kim","year":"2009","unstructured":"Kim JD, Ohta T, Pyysalo S, Kano Y, Tsujii J. Overview of BioNLP\u201909 Shared Task on Event Extraction. In: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task. Boulder, Colorado: Association for Computational Linguistics: 2009. p. 1\u20139."},{"key":"70_CR5","volume-title":"Proceedings of the BioNLP Shared Task 2011 Workshop","author":"JD Kim","year":"2011","unstructured":"Kim JD, Pyysalo S, Ohta T, Bossy R, Nguyen N, Tsujii J. Overview of BioNLP Shared Task 2011. In: Proceedings of the BioNLP Shared Task 2011 Workshop. Portland, Oregon, USA: Association for Computational Linguistics: 2011. p. 1\u20136."},{"key":"70_CR6","volume-title":"Proceedings of the BioNLP Shared Task 2013 Workshop","author":"C N\u00e9dellec","year":"2013","unstructured":"N\u00e9dellec C, Bossy R, Kim JD, Kim J-j, Ohta T, Pyysalo S, Zweigenbaum P. Overview of BioNLP Shared Task 2013. In: Proceedings of the BioNLP Shared Task 2013 Workshop. Sofia, Bulgaria: Association for Computational Linguistics: 2013. p. 1\u20137."},{"key":"70_CR7","volume-title":"Proceedings of the BioNLP Shared Task 2013 Workshop (BioNLP-ST\u201913)","author":"K Hakala","year":"2013","unstructured":"Hakala K, Van Landeghem S, Salakoski T, Van de Peer Y, Ginter F. EVEX in ST\u201913: Application of a large-scale text mining resource to event extraction and network construction. In: Proceedings of the BioNLP Shared Task 2013 Workshop (BioNLP-ST\u201913). Sofia, Bulgaria: Association for Computational Linguistics: 2013. p. 26\u201334."},{"issue":"Suppl 11","key":"70_CR8","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1186\/1471-2105-13-S11-S4","volume":"13","author":"J Bj\u00f6rne","year":"2012","unstructured":"Bj\u00f6rne J, Ginter F, Salakoski T. University of Turku in the BioNLP\u201911 Shared Task. BMC Bioinformatics. 2012; 13(Suppl 11):4.","journal-title":"BMC Bioinformatics"},{"key":"70_CR9","volume-title":"Proceedings of the BioNLP Shared Task 2013 Workshop","author":"A MacKinlay","year":"2013","unstructured":"MacKinlay A, Martinez D, Jimeno Yepes A, Liu H, Wilbur WJ, Verspoor K. Extracting biomedical events and modifications using subgraph matching with noisy training data. In: Proceedings of the BioNLP Shared Task 2013 Workshop. Sofia, Bulgaria: Association for Computational Linguistics: 2013. p. 35\u201344."},{"key":"70_CR10","volume-title":"Proceedings of the BioNLP Shared Task 2013 Workshop","author":"J Bj\u00f6rne","year":"2013","unstructured":"Bj\u00f6rne J, Salakoski T. TEES 2.1: Automated annotation scheme learning in the BioNLP 2013 Shared Task. In: Proceedings of the BioNLP Shared Task 2013 Workshop. Sofia, Bulgaria: Association for Computational Linguistics: 2013. p. 16\u201325."},{"issue":"4","key":"70_CR11","doi-asserted-by":"crossref","first-page":"e55814","DOI":"10.1371\/journal.pone.0055814","volume":"8","author":"S Van Landeghem","year":"2013","unstructured":"Van Landeghem S, Bj\u00f6rne J, Wei CH, Hakala K, Pyysalo S, Ananiadou S, Kao HY, Lu Z, Salakoski T, Van de Peer Y, Ginter F. Large-scale event extraction from literature with multi-level gene normalization. PLoS ONE. 2013; 8(4):e55814.","journal-title":"PLoS ONE"},{"issue":"16","key":"70_CR12","doi-asserted-by":"crossref","first-page":"2154","DOI":"10.1093\/bioinformatics\/bts332","volume":"28","author":"M Gerner","year":"2012","unstructured":"Gerner M, Sarafraz F, Bergman CM, Nenadic G. BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events. Bioinformatics. 2012; 28(16):2154\u201361.","journal-title":"Bioinformatics"},{"key":"70_CR13","volume-title":"Proceedings of the 2013 Workshop on Biomedical Natural Language Processing (BioNLP\u201913)","author":"S Van Landeghem","year":"2013","unstructured":"Van Landeghem S, Kaewphan S, Ginter F, Van de Peer Y. Evaluating large-scale text mining applications beyond the traditional numeric performance measures. In: Proceedings of the 2013 Workshop on Biomedical Natural Language Processing (BioNLP\u201913). Sofia, Bulgaria: Association for Computational Linguistics: 2013. p. 63\u201371."},{"issue":"Suppl 11","key":"70_CR14","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1186\/1471-2105-13-S11-S4","volume":"13","author":"J Bj\u00f6rne","year":"2012","unstructured":"Bj\u00f6rne J, Ginter F, Salakoski T. University of Turku in the BioNLP\u201911 Shared Task. BMC Bioinformatics. 2012; 13(Suppl 11):4.","journal-title":"BMC Bioinformatics"},{"key":"70_CR15","unstructured":"Mikolov T, Chen K, Corrado G, Dean J. Efficient estimation of word representations in vector space. 2013; abs\/1301.3781:1\u201312. CoRR abs\/1301.3781."},{"key":"70_CR16","volume-title":"Proceedings of the 5th International Symposium on Languages in Biology and Medicine (LBM 2013)","author":"S Pyysalo","year":"2013","unstructured":"Pyysalo S, Ginter F, Moen H, Salakoski T, Ananiadou S. Distributional semantics resources for biomedical text processing. In: Proceedings of the 5th International Symposium on Languages in Biology and Medicine (LBM 2013). Tokyo: Database Center for Life Science: 2013. p. 39\u201343."},{"issue":"3","key":"70_CR17","first-page":"1","volume":"3","author":"H Liu","year":"2012","unstructured":"Liu H, Christiansen T, Jr WAB, Verspoor K. BioLemmatizer: a lemmatization tool for morphological processing of biomedical text. J Biomed Semant. 2012; 3(3):1\u201329.","journal-title":"J Biomed Semant"},{"issue":"suppl 1","key":"70_CR18","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1093\/nar\/gkl1031","volume":"35","author":"DL Wheeler","year":"2007","unstructured":"Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Edgar R, Federhen S, et al.Database resources of the national center for biotechnology information. Nucleic Acids Res. 2007; 35(suppl 1):5\u201312.","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"70_CR19","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"M Ashburner","year":"2000","unstructured":"Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al.Gene Ontology: tool for the unification of biology. Nat Genet. 2000; 25(1):25\u20139.","journal-title":"Nat Genet"},{"issue":"1","key":"70_CR20","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1093\/nar\/28.1.27","volume":"28","author":"M Kanehisa","year":"2000","unstructured":"Kanehisa M, Goto S. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000; 28(1):27\u201330.","journal-title":"Nucleic Acids Res"},{"issue":"Suppl 11","key":"70_CR21","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1186\/1471-2105-13-S11-S2","volume":"13","author":"S Pyysalo","year":"2012","unstructured":"Pyysalo S, Ohta T, Rak R, Sullivan D, Mao C, Wang C, Sobral B, Tsujii J, Ananiadou S. Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011. BMC Bioinformatics. 2012; 13(Suppl 11):2.","journal-title":"BMC Bioinformatics"},{"key":"70_CR22","doi-asserted-by":"crossref","first-page":"1061","DOI":"10.1093\/sysbio\/sys062","volume":"61","author":"DH Huson","year":"2012","unstructured":"Huson DH, Scornavacca C. Dendroscope 3: An interactive tool for rooted phylogenetic trees and networks. Syst Biol. 2012; 61:1061\u20131067.","journal-title":"Syst Biol"},{"key":"70_CR23","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1155\/2012\/582765","volume":"2012","author":"S Van Landeghem","year":"2012","unstructured":"Van Landeghem S, Hakala K, R\u00f6nnqvist S, Salakoski T, Van de Peer Y, Ginter F. Exploring biomolecular literature with evex: Connecting genes through events, homology, and indirect associations. Adv Bioinformatics. 2012; 2012:1\u201312.","journal-title":"Adv Bioinformatics"}],"container-title":["Journal of Biomedical Semantics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s13326-016-0070-4","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,9,7]],"date-time":"2019-09-07T10:45:05Z","timestamp":1567853105000},"score":1,"resource":{"primary":{"URL":"http:\/\/jbiomedsem.biomedcentral.com\/articles\/10.1186\/s13326-016-0070-4"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,5,11]]},"references-count":23,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2016,12]]}},"alternative-id":["70"],"URL":"https:\/\/doi.org\/10.1186\/s13326-016-0070-4","relation":{},"ISSN":["2041-1480"],"issn-type":[{"value":"2041-1480","type":"electronic"}],"subject":[],"published":{"date-parts":[[2016,5,11]]},"article-number":"27"}}