{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,13]],"date-time":"2025-11-13T12:29:38Z","timestamp":1763036978023,"version":"3.37.3"},"reference-count":68,"publisher":"Springer Science and Business Media LLC","issue":"1","funder":[{"DOI":"10.13039\/501100003329","name":"Ministerio de Econom\u00eda y Competitividad (ES)","doi-asserted-by":"publisher","award":["TIN2014-53749-C2-2-R2"],"award-info":[{"award-number":["TIN2014-53749-C2-2-R2"]}],"id":[{"id":"10.13039\/501100003329","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100007801","name":"Fundaci\u00f3n S\u00e9neca (ES)","doi-asserted-by":"publisher","award":["15295\/PI\/10","15555\/FPI\/2010"],"award-info":[{"award-number":["15295\/PI\/10","15555\/FPI\/2010"]}],"id":[{"id":"10.13039\/100007801","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["J Biomed Semant"],"published-print":{"date-parts":[[2016,12]]},"DOI":"10.1186\/s13326-016-0075-z","type":"journal-article","created":{"date-parts":[[2016,6,3]],"date-time":"2016-06-03T01:05:44Z","timestamp":1464915944000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":26,"title":["Generation of open biomedical datasets through ontology-driven transformation and integration processes"],"prefix":"10.1186","volume":"7","author":[{"given":"Mar\u00eda del","family":"Carmen Legaz-Garc\u00eda","sequence":"first","affiliation":[]},{"given":"Jos\u00e9 Antonio","family":"Mi\u00f1arro-Gim\u00e9nez","sequence":"additional","affiliation":[]},{"given":"Marcos","family":"Men\u00e1rguez-Tortosa","sequence":"additional","affiliation":[]},{"given":"Jesualdo Tom\u00e1s","family":"Fern\u00e1ndez-Breis","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2016,6,3]]},"reference":[{"issue":"2","key":"75_CR1","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1111\/j.1432-1033.1977.tb11885.x","volume":"80","author":"FC Bernstein","year":"1977","unstructured":"Bernstein FC, Koetzle TF, Williams GJ, Meyer EF, Brice MD, Rodgers JR, Kennard O, Shimanouchi T, Tasumi M. The Protein Data Bank. Eur J Biochem. 1977; 80(2):319\u201324.","journal-title":"Eur J Biochem"},{"issue":"D1","key":"75_CR2","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1093\/nar\/gku1241","volume":"43","author":"MY Galperin","year":"2015","unstructured":"Galperin MY, Rigden DJ, Fern\u00e1ndez-Su\u00e1rez XM. The 2015 Nucleic Acids Research Database Issue and Molecular Biology Database Collection. Nucleic Acids Res. 2015; 43(D1):1\u20135.","journal-title":"Nucleic Acids Res"},{"key":"75_CR3","doi-asserted-by":"crossref","first-page":"256","DOI":"10.1093\/bib\/bbl027","volume":"7","author":"O Bodenreider","year":"2006","unstructured":"Bodenreider O, Stevens R. Bio-ontologies: current trends and future directions. Brief Bioinform. 2006; 7:256\u201374.","journal-title":"Brief Bioinform"},{"key":"75_CR4","doi-asserted-by":"crossref","first-page":"317","DOI":"10.1042\/BJ20091474","volume":"424","author":"T Attwood","year":"2009","unstructured":"Attwood T, Kell D, McDermott P, Marsh J, Pettifer S, Thorne D. Calling International Rescue: knowledge lost in literature and data landslide. Biochem J. 2009; 424:317\u201333.","journal-title":"Biochem J"},{"issue":"4","key":"75_CR5","doi-asserted-by":"crossref","first-page":"286","DOI":"10.4258\/hir.2013.19.4.286","volume":"19","author":"A Tapuria","year":"2013","unstructured":"Tapuria A, Kalra D, Kobayashi S. Contribution of Clinical Archetypes, and the Challenges, towards Achieving Semantic Interoperability for EHRs. Healthcare Inform Res. 2013; 19(4):286\u201392.","journal-title":"Healthcare Inform Res"},{"key":"75_CR6","unstructured":"Stroetman V, Kalra D, Lewalle P, Rector A, Rodrigues J, Stroetman K, Surjan G, Ustun B, Virtanen M, Zanstra P. Semantic interoperability for better health and safer healthcare. Research and Deployment Roadmap for Europe. SemanticHEALTH Project Report (January 2009), Published by the European Commission. 2009;:1\u201334. http:\/\/ec.europa.eu\/information_society\/ehealth ."},{"issue":"e1","key":"75_CR7","doi-asserted-by":"crossref","first-page":"175","DOI":"10.1136\/amiajnl-2013-001748","volume":"20","author":"JJ Saleem","year":"2013","unstructured":"Saleem JJ, Flanagan ME, Wilck NR, Demetriades J, Doebbeling BN. The next-generation electronic health record: perspectives of key leaders from the US Department of Veterans Affairs. J Am Med Inform Assoc. 2013; 20(e1):175\u20137.","journal-title":"J Am Med Inform Assoc"},{"issue":"e1","key":"75_CR8","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1136\/amiajnl-2012-000969","volume":"19","author":"NH Shah","year":"2012","unstructured":"Shah NH, Tenenbaum JD. The coming age of data-driven medicine: translational bioinformatics\u2019 next frontier. J Am Med Inform Assoc. 2012; 19(e1):2\u20134.","journal-title":"J Am Med Inform Assoc"},{"key":"75_CR9","doi-asserted-by":"crossref","first-page":"34","DOI":"10.1038\/scientificamerican0501-34","volume":"284(5)","author":"T Berners-Lee","year":"2001","unstructured":"Berners-Lee T, Hendler J, Lassila O. The Semantic Web. Sci Am. 2001; 284(5):34\u201343.","journal-title":"Sci Am"},{"issue":"2","key":"75_CR10","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1006\/knac.1993.1008","volume":"5","author":"TR Gruber","year":"1993","unstructured":"Gruber TR. A translation approach to portable ontology specifications. Knowl Acquisition. 1993; 5(2):199\u2013220.","journal-title":"Knowl Acquisition"},{"issue":"5","key":"75_CR11","doi-asserted-by":"crossref","first-page":"687","DOI":"10.1016\/j.jbi.2008.01.008","volume":"41","author":"C Goble","year":"2008","unstructured":"Goble C, Stevens R. State of the nation in data integration for bioinformatics. J Biomed Inform. 2008; 41(5):687\u201393.","journal-title":"J Biomed Inform"},{"key":"75_CR12","doi-asserted-by":"crossref","unstructured":"Noy NF, Shah NH, Whetzel PL, Dai B, Dorf M, Griffith N, Jonquet C, Rubin DL, Storey MA, Chute CG, et al. Bioportal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Res. 2009; 440.","DOI":"10.1093\/nar\/gkp440"},{"issue":"5","key":"75_CR13","doi-asserted-by":"crossref","first-page":"706","DOI":"10.1016\/j.jbi.2008.03.004","volume":"41","author":"F Belleau","year":"2008","unstructured":"Belleau F, Nolin MA, Tourigny N, Rigault P, Morissette J. Bio2RDF: towards a mashup to build bioinformatics knowledge systems. J Biomed Inform. 2008; 41(5):706\u201316.","journal-title":"J Biomed Inform"},{"issue":"4","key":"75_CR14","doi-asserted-by":"crossref","first-page":"392","DOI":"10.1093\/bib\/bbp024","volume":"10","author":"E Antezana","year":"2009","unstructured":"Antezana E, Kuiper M, Mironov V. Biological knowledge management: the emerging role of the semantic web technologies. Brief Bioinformatics. 2009; 10(4):392\u2013407.","journal-title":"Brief Bioinformatics"},{"issue":"1","key":"75_CR15","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"M Ashburner","year":"2000","unstructured":"Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al. Gene Ontology: tool for the unification of biology. Nat Genet. 2000; 25(1):25\u20139.","journal-title":"Nat Genet"},{"issue":"9","key":"75_CR16","doi-asserted-by":"crossref","first-page":"1338","DOI":"10.1093\/bioinformatics\/btt765","volume":"30","author":"S Jupp","year":"2014","unstructured":"Jupp S, Malone J, Bolleman J, Brandizi M, Davies M, Garcia L, Gaulton A, Gehant S, Laibe C, Redaschi N, et al. The EBI RDF platform: linked open data for the life sciences. Bioinformatics. 2014; 30(9):1338\u20139.","journal-title":"Bioinformatics"},{"issue":"1","key":"75_CR17","doi-asserted-by":"crossref","first-page":"150","DOI":"10.1016\/j.jbi.2008.05.005","volume":"42","author":"C Mart\u00ednez-Costa","year":"2009","unstructured":"Mart\u00ednez-Costa C, Men\u00e1rguez-Tortosa M, Fern\u00e1ndez-Breis JT, Maldonado JA. A model-driven approach for representing clinical archetypes for Semantic Web environments. J Biomed Inform. 2009; 42(1):150\u201364.","journal-title":"J Biomed Inform"},{"key":"75_CR18","doi-asserted-by":"crossref","unstructured":"Iqbal AM. An OWL-DL Ontology for the HL7 Reference Information Model. Lecture Notes in Computer Science. 2011; 6719:168\u201375.","DOI":"10.1007\/978-3-642-21535-3_22"},{"issue":"3","key":"75_CR19","doi-asserted-by":"crossref","first-page":"554","DOI":"10.1136\/amiajnl-2012-001326","volume":"20","author":"C Tao","year":"2013","unstructured":"Tao C, Jiang G, Oniki TA, Freimuth RR, Zhu Q, Sharma D, Pathak J, Huff SM, Chute CG. A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data. J Am Med Inform Assoc. 2013; 20(3):554\u201362.","journal-title":"J Am Med Inform Assoc"},{"issue":"5","key":"75_CR20","doi-asserted-by":"crossref","first-page":"736","DOI":"10.1016\/j.jbi.2010.05.013","volume":"43","author":"C Mart\u00ednez-Costa","year":"2010","unstructured":"Mart\u00ednez-Costa C, Men\u00e1rguez-Tortosa M, Fern\u00e1ndez-Breis JT. An approach for the semantic interoperability of ISO EN 13606 and OpenEHR archetypes. J Biomed Inform. 2010; 43(5):736\u201346.","journal-title":"J Biomed Inform"},{"issue":"5","key":"75_CR21","doi-asserted-by":"crossref","first-page":"869","DOI":"10.1016\/j.jbi.2011.05.006","volume":"44","author":"C Mart\u00ednez-Costa","year":"2011","unstructured":"Mart\u00ednez-Costa C, Men\u00e1rguez-Tortosa M, Fern\u00e1ndez-Breis JT. Clinical data interoperability based on archetype transformation. J Biomed Inform. 2011; 44(5):869\u201380.","journal-title":"J Biomed Inform"},{"issue":"3","key":"75_CR22","doi-asserted-by":"crossref","first-page":"536","DOI":"10.1093\/jamia\/ocu027","volume":"22","author":"M Legaz-Garc\u00eda","year":"2015","unstructured":"Legaz-Garc\u00eda M, Men\u00e1rguez-Tortosa M, Fern\u00e1ndez-Breis J, Chute C, Tao C. Transformation of Standardized Clinical Models based on OWL technologies: from CEM to OpenEHR archetypes. J Am Med Inform Assoc. 2015; 22(3):536\u2013544.","journal-title":"J Am Med Inform Assoc"},{"key":"75_CR23","doi-asserted-by":"crossref","unstructured":"Dentler K, ten Teije A, Cornet R, de Keizer N. Semantic Integration of Patient Data and Quality Indicators Based on openEHR Archetypes. Lecture Notes in Computer Science. 2013; 7738:85\u201397.","DOI":"10.1007\/978-3-642-36438-9_6"},{"issue":"e2","key":"75_CR24","doi-asserted-by":"crossref","first-page":"e288","DOI":"10.1136\/amiajnl-2013-001923","volume":"20","author":"JT Fern\u00e1ndez-Breis","year":"2013","unstructured":"Fern\u00e1ndez-Breis JT, Maldonado JA, Marcos M, del Carmen Legaz-Garc\u00eda M, Moner D, Torres-Sospedra J, Esteban-Gil A, Mart\u00ednez-Salvador B, Robles M. Leveraging electronic healthcare record standards and semantic web technologies for the identification of patient cohorts. J Am Med Inform Assoc. 2013; 20(e2):e288\u201396.","journal-title":"J Am Med Inform Assoc"},{"issue":"D1","key":"75_CR25","doi-asserted-by":"crossref","first-page":"580","DOI":"10.1093\/nar\/gkr1097","volume":"40","author":"N Juty","year":"2012","unstructured":"Juty N, Le Nov\u00e8re N, Laibe C. Identifiers.org and MIRIAM Registry: community resources to provide persistent identification. Nucleic Acids Res. 2012; 40(D1):580\u20136.","journal-title":"Nucleic Acids Res"},{"issue":"5","key":"75_CR26","doi-asserted-by":"crossref","first-page":"485","DOI":"10.1093\/bib\/bbr025","volume":"12","author":"T Schmitt","year":"2011","unstructured":"Schmitt T, Messina DN, Schreiber F, Sonnhammer EL. SeqXML and 717 OrthoXML: standards for sequence and orthology information. Brief Bioinform. 2011; 12(5):485\u2013488.","journal-title":"Brief Bioinform"},{"issue":"suppl 1","key":"75_CR27","first-page":"344","volume":"36","author":"K Degtyarenko","year":"2008","unstructured":"Degtyarenko K, De Matos P, Ennis M, Hastings J, Zbinden M, McNaught A, Alc\u00e1ntara R, Darsow M, Guedj M, Ashburner M. ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 2008; 36(suppl 1):344\u201350.","journal-title":"Nucleic Acids Res"},{"key":"75_CR28","unstructured":"HL, 7. http:\/\/www.hl7.org . Last Accessed: April 2016."},{"key":"75_CR29","unstructured":"openEHR Foundation OpenEHR. http:\/\/www.openehr.org . Last Accessed: April 2016."},{"key":"75_CR30","unstructured":"European Committee for Standardization. Health informatics - Electronic Health Record Communication Standard (ISO\/EN 13606). http:\/\/www.iso.org\/iso\/ . Last Accessed: April 2016."},{"key":"75_CR31","unstructured":"Beale T. The openEHR archetype model-archetype object model. The OpenEHR Release. 2008; 1(2):1\u201354."},{"key":"75_CR32","unstructured":"Shearer R, Motik B, Horrocks I. HermiT: A highly-efficient OWL reasoner. CEUR Workshop Proceedings 432, 208. http:\/\/ceur-ws.org\/Vol-432\/owled2008eu_submission_12.pdf ."},{"issue":"2","key":"75_CR33","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1016\/j.websem.2007.03.004","volume":"5","author":"E Sirin","year":"2007","unstructured":"Sirin E, Parsia B, Grau BC, Kalyanpur A, Katz Y. Pellet: A practical OWL-DL reasoner. Web Semantics: Sci Serv Agents World Wide Web. 2007; 5(2):51\u20133.","journal-title":"Web Semantics: Sci Serv Agents World Wide Web"},{"key":"75_CR34","doi-asserted-by":"crossref","unstructured":"Papailiou N, Konstantinou I, Tsoumakos D, Karras P, Koziris N. H2RDF+: High-performance distributed joins over large-scale RDF graphs, IEEE International Conference on Big Data. Silicon Valley, CA: IEEE: 2013. p. 255\u201363.","DOI":"10.1109\/BigData.2013.6691582"},{"issue":"5","key":"75_CR35","doi-asserted-by":"crossref","first-page":"87","DOI":"10.1109\/MIS.2009.102","volume":"24","author":"C Bizer","year":"2009","unstructured":"Bizer C. The emerging web of linked data. Intell Syst IEEE. 2009; 24(5):87\u201392.","journal-title":"Intell Syst IEEE"},{"issue":"3","key":"75_CR36","doi-asserted-by":"crossref","first-page":"173","DOI":"10.3233\/SW-140135","volume":"5","author":"K Janowicz","year":"2014","unstructured":"Janowicz K, Hitzler P, Adams B, Kolas D, Vardeman II C. Five stars of linked data vocabulary use. Semantic Web. 2014; 5(3):173\u20136.","journal-title":"Semantic Web"},{"issue":"2","key":"75_CR37","doi-asserted-by":"crossref","first-page":"571","DOI":"10.1109\/TKDE.2014.2330822","volume":"27","author":"A Abello","year":"2015","unstructured":"Abello A, Romero O, Bach Pedersen T, Berlanga R, Nebot V, Aramburu MJ, Simitsis A. Using Semantic Web technologies for exploratory OLAP: a survey. IEEE Trans Knowl Data Eng. 2015; 27(2):571\u201388.","journal-title":"IEEE Trans Knowl Data Eng"},{"key":"75_CR38","doi-asserted-by":"crossref","unstructured":"Klein M. Interpreting XML documents via an RDF schema ontology, 13th International Workshop on Database and Expert Systems Applications. IEEE: 2002. p. 889\u201393.","DOI":"10.1109\/DEXA.2002.1046008"},{"key":"75_CR39","first-page":"58","volume":"449","author":"C Lange","year":"2009","unstructured":"Lange C. Krextor\u2013an extensible XML? RDF extraction framework. Scripting Dev Semantic Web. 2009; 449:58\u201364. CEUR Workshop Proceedings.","journal-title":"Scripting Dev Semantic Web"},{"issue":"7","key":"75_CR40","doi-asserted-by":"crossref","first-page":"755","DOI":"10.1002\/asna.200811233","volume":"330","author":"F Breitling","year":"2009","unstructured":"Breitling F. A standard transformation from XML to RDF via XSLT. Astronomische Nachrichten. 2009; 330(7):755\u201360.","journal-title":"Astronomische Nachrichten"},{"key":"75_CR41","doi-asserted-by":"crossref","unstructured":"Huang JY, Lange C, Auer S. Streaming Transformation of XML to RDF using XPath-based Mappings. In: Proceedings of the 11th International Conference on Semantic Systems. ACM: 2015. p. 129\u201336.","DOI":"10.1145\/2814864.2814880"},{"key":"75_CR42","doi-asserted-by":"crossref","unstructured":"Skoutas D, Simitsis A, Sellis T. Ontology-driven conceptual design of ETL processes using graph transformations. Lecture Notes in Computer Science. 2009; 1338:120\u201346.","DOI":"10.1007\/978-3-642-03098-7_5"},{"key":"75_CR43","volume-title":"Proceedings of the 6th International Conference on Semantic Systems. I-SEMANTICS \u201910","author":"G B\u016bmans","year":"2010","unstructured":"B\u016bmans G, \u010cer\u0101ns K. RDB2OWL: a practical approach for transforming RDB data into RDF\/OWL. In: Proceedings of the 6th International Conference on Semantic Systems. I-SEMANTICS \u201910. New York, NY, USA: ACM: 2010. p. 25\u20131253."},{"key":"75_CR44","doi-asserted-by":"crossref","first-page":"375","DOI":"10.1007\/978-3-642-30284-8_32","volume":"7295","author":"CA Knoblock","year":"2012","unstructured":"Knoblock CA, Szekely P, Ambite JL, Goel A, Gupta S, Lerman K, Muslea M, Taheriyan M, Mallick P. Semi-automatically Mapping Structured Sources into the Semantic Web. Lecture Notes Comput Sci. 2012; 7295:375\u201390.","journal-title":"Lecture Notes Comput Sci"},{"key":"75_CR45","unstructured":"Kontchakov R, Lutz C, Toman D, Wolter F, Zakharyaschev M. The combined approach to ontology-based data access. Twenty-Second International Joint Conference on Artificial Intelligence. 2011;:2656\u20132661."},{"key":"75_CR46","doi-asserted-by":"crossref","first-page":"124","DOI":"10.1007\/978-3-540-77088-6_12","volume":"4877","author":"C Tsinaraki","year":"2007","unstructured":"Tsinaraki C, Christodoulakis S. XS2OWL: A Formal Model and a System for Enabling XML Schema Applications to Interoperate with OWL-DL Domain Knowledge and Semantic Web Tools. Lecture Notes Comput Sci. 2007; 4877:124\u201336.","journal-title":"Lecture Notes Comput Sci"},{"key":"75_CR47","doi-asserted-by":"crossref","unstructured":"Auer S, Dietzold S, Lehmann J, Hellmann S, Aumueller D. Triplify:light-weight linked data publication from relational databases. In: Proceedings of the 18th International Conference on World Wide Web. ACM: 2009. p. 621\u201330.","DOI":"10.1145\/1526709.1526793"},{"key":"75_CR48","unstructured":"Bizer C, Cyganiak R. D2R Server - Publishing Relational Databases on the Semantic Web. Poster at the 5th International Semantic Web Conference. Athens, USA: 2006. p. 294\u2013309."},{"key":"75_CR49","unstructured":"Erling O, Mikhailov I. RDF Support in the Virtuoso DBMS. CEUR Workshop Proceedings. 2007; 301. http:\/\/ceur-ws.org\/Vol-301\/Paper_5_Erling.pdf ."},{"key":"75_CR50","unstructured":"Rodr\u00edguez-Muro M, Hardi J, Calvanese D. Quest: efficient SPARQL-to-SQL for RDF and OWL. CEUR Workshop Proceedings. 2012; 914. poster 53."},{"key":"75_CR51","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1016\/j.websem.2013.08.002","volume":"22","author":"JF Sequeda","year":"2013","unstructured":"Sequeda JF, Miranker DP. Ultrawrap: SPARQL execution on relational data. Web Semantics: Sci Serv Agents World Wide Web. 2013; 22:19\u201339.","journal-title":"Web Semantics: Sci Serv Agents World Wide Web"},{"key":"75_CR52","doi-asserted-by":"crossref","unstructured":"Calvanese D, Cogrel B, Komla-Ebri S, Kontchakov R, Lanti D, Rezk M, Rodriguez-Muro M, XIao G. Ontology-based data access: Ontop of databases. Lecture Notes in Computer Science. 2013; 8218:558\u2013573.","DOI":"10.1007\/978-3-642-41335-3_35"},{"issue":"Suppl 12","key":"75_CR53","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1186\/1471-2105-10-S12-S7","volume":"10","author":"M Mesiti","year":"2009","unstructured":"Mesiti M, Jim\u00e9nez-Ruiz E, Sanz I, Berlanga-Llavori R, Perlasca P, Valentini G, Manset D. XML-based approaches for the integration of heterogeneous bio-molecular data. BMC bioinformatics. 2009; 10(Suppl 12):7.","journal-title":"BMC bioinformatics"},{"issue":"7","key":"75_CR54","doi-asserted-by":"crossref","first-page":"712","DOI":"10.1016\/j.compbiomed.2005.02.004","volume":"36","author":"D P\u00e9rez-Rey","year":"2006","unstructured":"P\u00e9rez-Rey D, Maojo V, Garc\u00eda-Remesal M, Alonso-Calvo R, Billhardt H, Mart\u00edn-S\u00e1nchez F, Sousa A. Ontofusion: Ontology-based integration of genomic and clinical databases. Comput Biol Med. 2006; 36(7):712\u201330.","journal-title":"Comput Biol Med"},{"issue":"2","key":"75_CR55","doi-asserted-by":"crossref","first-page":"184","DOI":"10.1093\/bioinformatics\/16.2.184","volume":"16","author":"R Stevens","year":"2000","unstructured":"Stevens R, Baker P, Bechhofer S, Ng G, Jacoby A, Paton NW, Goble CA, Brass A. TAMBIS: transparent access to multiple bioinformatics information sources. Bioinformatics. 2000; 16(2):184\u20136.","journal-title":"Bioinformatics"},{"issue":"Suppl 10","key":"75_CR56","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1186\/1471-2105-10-S10-S13","volume":"10","author":"JA Mi\u00f1arro-Gimenez","year":"2009","unstructured":"Mi\u00f1arro-Gimenez JA, Madrid M, Fernandez-Breis JT. OGO: an ontological approach for integrating knowledge about orthology. BMC Bioinformatics. 2009; 10(Suppl 10):13.","journal-title":"BMC Bioinformatics"},{"key":"75_CR57","unstructured":"Horridge M, Bechhofer S. The OWL API: a Java API for working with OWL 2 ontologies. CEUR Workshop Proceedings. 2009; 529. http:\/\/ceur-ws.org\/Vol-529\/owled2009_submission_29.pdf ."},{"issue":"2","key":"75_CR58","doi-asserted-by":"crossref","first-page":"145","DOI":"10.3233\/SW-130109","volume":"5","author":"JA Mi\u00f1arro-Gim\u00e9nez","year":"2014","unstructured":"Mi\u00f1arro-Gim\u00e9nez JA, Ega\u00f1a Aranguren M, Villaz\u00f3n-Terrazas B, Fern\u00e1ndez Breis JT. Translational research combining orthologous genes and human diseases with the OGOLOD dataset. Semantic Web. 2014; 5(2):145\u20139.","journal-title":"Semantic Web"},{"issue":"8","key":"75_CR59","doi-asserted-by":"crossref","first-page":"4285","DOI":"10.1073\/pnas.96.8.4285","volume":"96","author":"M Pellegrini","year":"1999","unstructured":"Pellegrini M, Marcotte EM, Thompson MJ, Eisenberg D, Yeates TO. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc Nat Acad Sci. 1999; 96(8):4285\u20138.","journal-title":"Proc Nat Acad Sci"},{"issue":"5","key":"75_CR60","doi-asserted-by":"crossref","first-page":"1041","DOI":"10.1006\/jmbi.2000.5197","volume":"314","author":"M Remm","year":"2001","unstructured":"Remm M, Storm CE, Sonnhammer EL. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J Mol Biol. 2001; 314(5):1041\u201352.","journal-title":"J Mol Biol"},{"issue":"suppl 1","key":"75_CR61","doi-asserted-by":"crossref","first-page":"363","DOI":"10.1093\/nar\/gkj123","volume":"34","author":"F Chen","year":"2006","unstructured":"Chen F, Mackey AJ, Stoeckert CJ, Roos DS. OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Res. 2006; 34(suppl 1):363\u20138.","journal-title":"Nucleic Acids Res"},{"key":"75_CR62","doi-asserted-by":"crossref","DOI":"10.56021\/9780801857423","volume-title":"Mendelian Inheritance in Man: a Catalog of Human Genes and Genetic Disorders","author":"VA McKusick","year":"1998","unstructured":"McKusick VA. Mendelian Inheritance in Man: a Catalog of Human Genes and Genetic Disorders. United States: JHU Press; 1998."},{"key":"75_CR63","volume-title":"Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, Cambridge UK, December 7\u201310, 2015","author":"JT Fern\u00e1ndez-Breis","year":"2015","unstructured":"Fern\u00e1ndez-Breis JT, Legaz-Garc\u00eda MDC, Chiba H, Uchiyama I. Towards the semantic standardization of orthology content. In: Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, Cambridge UK, December 7\u201310, 2015: 2015. p. 74\u201383."},{"issue":"7","key":"75_CR64","doi-asserted-by":"crossref","first-page":"1757","DOI":"10.1021\/ci3001277","volume":"52","author":"JJ Irwin","year":"2012","unstructured":"Irwin JJ, Sterling T, Mysinger MM, Bolstad ES, Coleman RG. Zinc: a free tool to discover chemistry for biology. J Chem Inform Model. 2012; 52(7):1757\u201368.","journal-title":"J Chem Inform Model"},{"key":"75_CR65","unstructured":"Jupp S, Horridge M, Iannone L, Klein J, Owen S, Schanstra J, Stevens R, Wolstencroft K. Populous: A tool for populating ontology templates. arXiv:1012.1745 [cs]. 2010. arXiv: 1012.1745."},{"issue":"4","key":"75_CR66","doi-asserted-by":"crossref","first-page":"428","DOI":"10.1007\/s10115-003-0137-2","volume":"6","author":"NF Noy","year":"2004","unstructured":"Noy NF, Klein M. Ontology evolution: Not the same as schema evolution. Knowl Inform Syst. 2004; 6(4):428\u201340.","journal-title":"Knowl Inform Syst"},{"issue":"3","key":"75_CR67","doi-asserted-by":"crossref","first-page":"660","DOI":"10.4338\/ACI-2014-04-RA-0031","volume":"5","author":"C Mart\u00ednez-Costa","year":"2014","unstructured":"Mart\u00ednez-Costa C, Schulz S. Ontology content patterns as bridge for the semantic representation of clinical information. Appl Clin Inform. 2014; 5(3):660\u20139.","journal-title":"Appl Clin Inform"},{"key":"75_CR68","doi-asserted-by":"crossref","unstructured":"Guarino N. The role of identity conditions in ontology design. Lecture Notes in Computer Science. 1999; 1661:221\u2013234.","DOI":"10.1007\/3-540-48384-5_15"}],"container-title":["Journal of Biomedical Semantics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s13326-016-0075-z","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,8,18]],"date-time":"2023-08-18T18:50:10Z","timestamp":1692384610000},"score":1,"resource":{"primary":{"URL":"http:\/\/jbiomedsem.biomedcentral.com\/articles\/10.1186\/s13326-016-0075-z"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,6,3]]},"references-count":68,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2016,12]]}},"alternative-id":["75"],"URL":"https:\/\/doi.org\/10.1186\/s13326-016-0075-z","relation":{},"ISSN":["2041-1480"],"issn-type":[{"type":"electronic","value":"2041-1480"}],"subject":[],"published":{"date-parts":[[2016,6,3]]},"article-number":"32"}}