{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,5,4]],"date-time":"2025-05-04T12:01:34Z","timestamp":1746360094743,"version":"3.37.3"},"reference-count":38,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2016,6,13]],"date-time":"2016-06-13T00:00:00Z","timestamp":1465776000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2016,6,13]],"date-time":"2016-06-13T00:00:00Z","timestamp":1465776000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R21-AR063781","R01HG004838-03"],"award-info":[{"award-number":["R21-AR063781","R01HG004838-03"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["J Biomed Semant"],"published-print":{"date-parts":[[2016,12]]},"DOI":"10.1186\/s13326-016-0085-x","type":"journal-article","created":{"date-parts":[[2016,6,13]],"date-time":"2016-06-13T13:14:41Z","timestamp":1465823681000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":13,"title":["DermO; an ontology for the description of dermatologic disease"],"prefix":"10.1186","volume":"7","author":[{"given":"Hannah M.","family":"Fisher","sequence":"first","affiliation":[]},{"given":"Robert","family":"Hoehndorf","sequence":"additional","affiliation":[]},{"given":"Bruno S.","family":"Bazelato","sequence":"additional","affiliation":[]},{"given":"Soheil S.","family":"Dadras","sequence":"additional","affiliation":[]},{"suffix":"Jr.","given":"Lloyd E.","family":"King","sequence":"additional","affiliation":[]},{"given":"Georgios V.","family":"Gkoutos","sequence":"additional","affiliation":[]},{"given":"John P.","family":"Sundberg","sequence":"additional","affiliation":[]},{"given":"Paul N.","family":"Schofield","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2016,6,13]]},"reference":[{"key":"85_CR1","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.det.2011.09.002","volume":"30","author":"L Huff","year":"2012","unstructured":"Huff L, McLaughlin L, Gamble R, Dellavalle RP. Introduction: US dermatologic health care needs assessment. Dermatol Clin. 2012;30:1\u20133. vii.","journal-title":"Dermatol Clin"},{"key":"85_CR2","unstructured":"Dermatologischer Diagnosenkatalog; \n                    http:\/\/www.dermatology.uni-kiel.de\/DDK\/dermdiag.html\n                    \n                  . Accessed 10 Oct 2015."},{"key":"85_CR3","unstructured":"Dermlex: \n                    http:\/\/www.aad.org\/dermlex\/\n                    \n                  , \n                    http:\/\/purl.bioontology.org\/ontology\/DERMLEX\n                    \n                  . Accessed 10 Oct 2015."},{"key":"85_CR4","doi-asserted-by":"publisher","first-page":"630","DOI":"10.1016\/S0190-9622(03)01571-8","volume":"50","author":"A Papier","year":"2004","unstructured":"Papier A, Chalmers RJG, Byrnes JA, Goldsmith LA. Framework for improved communication: the Dermatology Lexicon Project. J Am Acad Dermatol. 2004;50:630\u20134.","journal-title":"J Am Acad Dermatol"},{"key":"85_CR5","doi-asserted-by":"publisher","first-page":"2527","DOI":"10.1038\/jid.2010.221","volume":"130","author":"LA Goldsmith","year":"2010","unstructured":"Goldsmith LA, Papier A. Fighting Babel with precise definitions of knowledge. J Invest Dermatol. 2010;130:2527\u201330.","journal-title":"J Invest Dermatol"},{"key":"85_CR6","doi-asserted-by":"publisher","first-page":"D1071","DOI":"10.1093\/nar\/gku1011","volume":"43","author":"WA Kibbe","year":"2015","unstructured":"Kibbe WA, Arze C, Felix V, Mitraka E, Bolton E, Fu G, et al. Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data. Nucleic Acids Res. 2015;43:D1071\u20138.","journal-title":"Nucleic Acids Res"},{"key":"85_CR7","doi-asserted-by":"publisher","first-page":"D966","DOI":"10.1093\/nar\/gkt1026","volume":"42","author":"S Kohler","year":"2014","unstructured":"Kohler S, Doelken SC, Mungall CJ, Bauer S, Firth HV, Bailleul-Forestier I, et al. The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res. 2014;42:D966\u201374.","journal-title":"Nucleic Acids Res"},{"key":"85_CR8","unstructured":"ICD-11 Beta Draft:\n                    http:\/\/apps.who.int\/classifications\/icd11\/browse\/f\/en\n                    \n                  . Accessed 10 Oct 2015."},{"key":"85_CR9","first-page":"1420","volume":"386","author":"Lancet Editorial","year":"2015","unstructured":"Lancet Editorial. ICD-10: there\u2019s a code for that. Lancet. 2015;386:1420.","journal-title":"Lancet"},{"key":"85_CR10","volume-title":"Dermatology","author":"J Bolognia","year":"2012","unstructured":"Bolognia J, Jorizzo JL, Schaffer JV. Dermatology. 3rd ed. Philadelphia: Elsevier Saunders; 2012.","edition":"3"},{"key":"85_CR11","unstructured":"International League of Dermatological Societies newsletter \n                    http:\/\/web.ilds.org\/ILDS\/media\/ILDS\/Newsletters\/ILDS_Newsletter_26.pdf\n                    \n                  . Accessed 10 Oct 2015."},{"key":"85_CR12","doi-asserted-by":"publisher","first-page":"2198","DOI":"10.1093\/bioinformatics\/btm112","volume":"23","author":"J Day-Richter","year":"2007","unstructured":"Day-Richter J, Harris MA, Haendel M, Lewis S. OBO-Edit--an ontology editor for biologists. Bioinformatics (Oxford, England). 2007;23:2198\u2013200.","journal-title":"Bioinformatics (Oxford, England)"},{"issue":"Suppl 1","key":"85_CR13","doi-asserted-by":"publisher","first-page":"34","DOI":"10.1007\/s10278-007-9065-0","volume":"20","author":"DL Rubin","year":"2007","unstructured":"Rubin DL, Noy NF, Musen MA. Protege: a tool for managing and using terminology in radiology applications. J Digit Imaging. 2007;20 Suppl 1:34\u201346.","journal-title":"J Digit Imaging"},{"key":"85_CR14","doi-asserted-by":"crossref","first-page":"165","DOI":"10.1613\/jair.2811","volume":"36","author":"B Motik","year":"2009","unstructured":"Motik B, Shearer R, Horrocks I. Hypertableau reasoning for description logics. J Artif Intell Res. 2009;36:165\u2013228.","journal-title":"J Artif Intell Res"},{"key":"85_CR15","unstructured":"Horrocks, I: OBO Flat File Format Syntax and Semantics and Mapping to OWL, Web Ontology Language. Tech Report, University of Manchester. 2007. \n                    http:\/\/www.cs.man.ac.uk\/~horrocks\/obo\/\n                    \n                  . Accessed 10 Oct 2015."},{"key":"85_CR16","doi-asserted-by":"publisher","first-page":"309","DOI":"10.1016\/j.websem.2008.05.001","volume":"6","author":"BC Grau","year":"2008","unstructured":"Grau BC, Horrocks I, Motik B, Parsia B, Patel-Schneider P, Sattler U. OWL 2: The next step for OWL. Web Semant Sci Serv Agents World Wide Web. 2008;6:309\u201322.","journal-title":"Web Semant Sci Serv Agents World Wide Web"},{"key":"85_CR17","doi-asserted-by":"publisher","first-page":"W170","DOI":"10.1093\/nar\/gkp440","volume":"37","author":"NF Noy","year":"2009","unstructured":"Noy NF, Shah NH, Whetzel PL, Dai B, Dorf M, Griffith N, et al. BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Res. 2009;37:W170\u20133.","journal-title":"Nucleic Acids Res"},{"key":"85_CR18","unstructured":"Dermnet; \n                    http:\/\/www.dermnetnz.org\/\n                    \n                  . (Accessed 10 Oct 2015)."},{"key":"85_CR19","doi-asserted-by":"publisher","first-page":"D267","DOI":"10.1093\/nar\/gkh061","volume":"32","author":"O Bodenreider","year":"2004","unstructured":"Bodenreider O. The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Res. 2004;32:D267\u201370.","journal-title":"Nucleic Acids Res"},{"key":"85_CR20","doi-asserted-by":"publisher","first-page":"653","DOI":"10.1007\/s00335-012-9421-3","volume":"23","author":"CL Smith","year":"2012","unstructured":"Smith CL, Eppig JT. The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data. Mamm Genome. 2012;23:653\u201368.","journal-title":"Mamm Genome"},{"key":"85_CR21","doi-asserted-by":"publisher","first-page":"564","DOI":"10.1002\/humu.21466","volume":"32","author":"J Amberger","year":"2011","unstructured":"Amberger J, Bocchini C, Hamosh A. A new face and new challenges for Online Mendelian Inheritance in Man (OMIM). Hum Mutat. 2011;32:564\u20137.","journal-title":"Hum Mutat"},{"key":"85_CR22","first-page":"279","volume":"121","author":"K Donnelly","year":"2006","unstructured":"Donnelly K. SNOMED-CT: The advanced terminology and coding system for eHealth. Stud Health Technol Inform. 2006;121:279\u201390.","journal-title":"Stud Health Technol Inform"},{"key":"85_CR23","doi-asserted-by":"publisher","first-page":"1115","DOI":"10.1111\/j.1365-2133.2007.07834.x","volume":"156","author":"SN Leech","year":"2007","unstructured":"Leech SN, Moss C. A current and online genodermatosis database. Brit J Dermatol. 2007;156:1115\u201348.","journal-title":"Brit J Dermatol"},{"key":"85_CR24","doi-asserted-by":"publisher","first-page":"2628","DOI":"10.1038\/jid.2009.108","volume":"129","author":"JD Feramisco","year":"2009","unstructured":"Feramisco JD, Sadreyev RI, Murray ML, Grishin NV, Tsao H. Phenotypic and genotypic analyses of genetic skin disease through the Online Mendelian Inheritance in Man (OMIM) database. J Invest Dermatol. 2009;129:2628\u201336.","journal-title":"J Invest Dermatol"},{"key":"85_CR25","doi-asserted-by":"publisher","first-page":"2891","DOI":"10.1093\/bioinformatics\/btp538","volume":"25","author":"RI Sadreyev","year":"2009","unstructured":"Sadreyev RI, Feramisco JD, Tsao H, Grishin NV. Phenotypic categorization of genetic skin diseases reveals new relations between phenotypes, genes and pathways. Bioinformatics (Oxford, England). 2009;25:2891\u20136.","journal-title":"Bioinformatics (Oxford, England)"},{"key":"85_CR26","doi-asserted-by":"publisher","first-page":"606","DOI":"10.1016\/j.clindermatol.2007.08.015","volume":"25","author":"L Fry","year":"2007","unstructured":"Fry L, Baker BS. Triggering psoriasis: the role of infections and medications. Clin Dermatol. 2007;25:606\u201315.","journal-title":"Clin Dermatol"},{"key":"85_CR27","doi-asserted-by":"publisher","first-page":"10888","DOI":"10.1038\/srep10888","volume":"5","author":"R Hoehndorf","year":"2015","unstructured":"Hoehndorf R, Schofield PN, Gkoutos GV. Analysis of the human diseasome reveals phenotype modules across common, genetic, and infectious diseases. Sci Rep. 2015;5:10888\u201391.","journal-title":"Sci Rep"},{"key":"85_CR28","doi-asserted-by":"publisher","first-page":"52","DOI":"10.1007\/978-3-540-78135-6_5","volume-title":"Computational Linguistics and Intelligent Text Processing: 9th International Conference, CICLing 2008, Haifa, Israel, February 17-23, 2008 Proceedings","author":"S Bordag","year":"2008","unstructured":"Bordag S. A Comparison of Co-occurrence and Similarity Measures as Simulations of Context. In: Gelbukh A, editor. Computational Linguistics and Intelligent Text Processing: 9th International Conference, CICLing 2008, Haifa, Israel, February 17-23, 2008 Proceedings. Berlin, Heidelberg: Springer Berlin Heidelberg; 2008. p. 52\u201363."},{"key":"85_CR29","doi-asserted-by":"publisher","first-page":"26","DOI":"10.1186\/s12859-015-0456-9","volume":"16","author":"R Hoehndorf","year":"2015","unstructured":"Hoehndorf R, Slater L, Schofield PN, Gkoutos GV. Aber-OWL: a framework for ontology-based data access in biology. BMC Bioinformatics. 2015;16:26\u201330.","journal-title":"BMC Bioinformatics"},{"key":"85_CR30","volume-title":"International AAAI Conference on Web and Social Media","author":"B Mathieu","year":"2009","unstructured":"Mathieu B, Sebastien H, Mathieu J. Gephi: An Open Source Software for Exploring and Manipulating Networks. In: International AAAI Conference on Web and Social Media. San Jose, California: Third International AAAI Conference on Weblogs and Social Media; 2009."},{"key":"85_CR31","first-page":"116","volume":"2009","author":"RH Scheuermann","year":"2009","unstructured":"Scheuermann RH, Ceusters W, Smith B. Toward an ontological treatment of disease and diagnosis. Summit on translational bioinformatics. 2009;2009:116\u201320.","journal-title":"Summit on translational bioinformatics"},{"key":"85_CR32","doi-asserted-by":"publisher","first-page":"283","DOI":"10.1002\/ajmg.1572","volume":"103","author":"PN Kantaputra","year":"2001","unstructured":"Kantaputra PN, Kunachaichote J, Patikulsila P. Mental retardation, obesity, mandibular prognathism with eye and skin anomalies (MOMES syndrome): a newly recognized autosomal recessive syndrome. Am J Med Genet. 2001;103:283\u20138.","journal-title":"Am J Med Genet"},{"key":"85_CR33","unstructured":"Medical Subjects Headings (MeSH) [\n                    http:\/\/www.nlm.nih.gov\/mesh\/\n                    \n                  ]."},{"key":"85_CR34","doi-asserted-by":"publisher","first-page":"278","DOI":"10.1001\/archderm.1982.01650160068028","volume":"118","author":"Y Hori","year":"1982","unstructured":"Hori Y, Tsuru N, Niimura M. Bullous Darier\u2019s disease. Arch Dermatol. 1982;118:278\u20139.","journal-title":"Arch Dermatol"},{"key":"85_CR35","doi-asserted-by":"publisher","first-page":"168","DOI":"10.1111\/j.1365-2133.2007.07920.x","volume":"157","author":"MC Bolling","year":"2007","unstructured":"Bolling MC, Mekkes JR, Goldschmidt WF, Van Noesel CJ, Jonkman MF, Pas HH. Acquired palmoplantar keratoderma and immunobullous disease associated with antibodies to desmocollin 3. Br J Dermatol. 2007;157:168\u201373.","journal-title":"Br J Dermatol"},{"key":"85_CR36","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkr538","volume":"39","author":"R Hoehndorf","year":"2011","unstructured":"Hoehndorf R, Schofield PN, Gkoutos GV. PhenomeNET: a whole-phenome approach to disease gene discovery. Nucleic Acids Res. 2011;39:e119.","journal-title":"Nucleic Acids Res"},{"key":"85_CR37","doi-asserted-by":"publisher","first-page":"1205","DOI":"10.1093\/bioinformatics\/btq126","volume":"26","author":"JC Denny","year":"2010","unstructured":"Denny JC, Ritchie MD, Basford MA, Pulley JM, Bastarache L, Brown-Gentry K, et al. PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations. Bioinformatics. 2010;26:1205\u201310.","journal-title":"Bioinformatics"},{"key":"85_CR38","doi-asserted-by":"publisher","first-page":"410","DOI":"10.1002\/gepi.20589","volume":"35","author":"SA Pendergrass","year":"2011","unstructured":"Pendergrass SA, Brown-Gentry K, Dudek SM. The use of phenome-wide association studies (PheWAS) for exploration of novel genotype-phenotype relationships and pleiotropy discovery. Genet Epidemiol. 2011;35:410\u201322.","journal-title":"Genet Epidemiol"}],"container-title":["Journal of Biomedical Semantics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s13326-016-0085-x.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s13326-016-0085-x\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s13326-016-0085-x","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s13326-016-0085-x.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,15]],"date-time":"2020-05-15T13:34:06Z","timestamp":1589549646000},"score":1,"resource":{"primary":{"URL":"https:\/\/jbiomedsem.biomedcentral.com\/articles\/10.1186\/s13326-016-0085-x"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,6,13]]},"references-count":38,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2016,12]]}},"alternative-id":["85"],"URL":"https:\/\/doi.org\/10.1186\/s13326-016-0085-x","relation":{},"ISSN":["2041-1480"],"issn-type":[{"type":"electronic","value":"2041-1480"}],"subject":[],"published":{"date-parts":[[2016,6,13]]},"assertion":[{"value":"21 November 2015","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"3 June 2016","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"13 June 2016","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"38"}}