{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,15]],"date-time":"2026-03-15T13:43:44Z","timestamp":1773582224202,"version":"3.50.1"},"reference-count":52,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2016,11,14]],"date-time":"2016-11-14T00:00:00Z","timestamp":1479081600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2016,11,14]],"date-time":"2016-11-14T00:00:00Z","timestamp":1479081600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004963","name":"Seventh Framework Programme","doi-asserted-by":"publisher","award":["312848"],"award-info":[{"award-number":["312848"]}],"id":[{"id":"10.13039\/501100004963","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["IOS-1340112"],"award-info":[{"award-number":["IOS-1340112"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000268","name":"Biotechnology and Biological Sciences Research Council","doi-asserted-by":"publisher","award":["BB\/J004464\/1"],"award-info":[{"award-number":["BB\/J004464\/1"]}],"id":[{"id":"10.13039\/501100000268","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004963","name":"Seventh Framework Programme","doi-asserted-by":"publisher","award":["284443"],"award-info":[{"award-number":["284443"]}],"id":[{"id":"10.13039\/501100004963","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001659","name":"Deutsche Forschungsgemeinschaft","doi-asserted-by":"publisher","award":["HI 1538\/2-2"],"award-info":[{"award-number":["HI 1538\/2-2"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["J Biomed Semant"],"published-print":{"date-parts":[[2016,12]]},"DOI":"10.1186\/s13326-016-0107-8","type":"journal-article","created":{"date-parts":[[2016,11,14]],"date-time":"2016-11-14T13:35:47Z","timestamp":1479130547000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":40,"title":["The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants"],"prefix":"10.1186","volume":"7","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-8149-5890","authenticated-orcid":false,"given":"Robert","family":"Hoehndorf","sequence":"first","affiliation":[]},{"given":"Mona","family":"Alshahrani","sequence":"additional","affiliation":[]},{"given":"Georgios V.","family":"Gkoutos","sequence":"additional","affiliation":[]},{"given":"George","family":"Gosline","sequence":"additional","affiliation":[]},{"given":"Quentin","family":"Groom","sequence":"additional","affiliation":[]},{"given":"Thomas","family":"Hamann","sequence":"additional","affiliation":[]},{"given":"Jens","family":"Kattge","sequence":"additional","affiliation":[]},{"given":"Sylvia Mota","family":"de Oliveira","sequence":"additional","affiliation":[]},{"given":"Marco","family":"Schmidt","sequence":"additional","affiliation":[]},{"given":"Soraya","family":"Sierra","sequence":"additional","affiliation":[]},{"given":"Erik","family":"Smets","sequence":"additional","affiliation":[]},{"given":"Rutger A.","family":"Vos","sequence":"additional","affiliation":[]},{"given":"Claus","family":"Weiland","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2016,11,14]]},"reference":[{"key":"107_CR1","doi-asserted-by":"publisher","DOI":"10.1017\/CBO9780511541803","volume-title":"Guide to Standard Floras of the World: An Annotated, Geographically Arranged Systematic Bibliography of the Principal Floras, Enumerations, Checklists and Chorological Atlases of Different Areas","author":"DG Frodin","year":"2001","unstructured":"Frodin DG. Guide to Standard Floras of the World: An Annotated, Geographically Arranged Systematic Bibliography of the Principal Floras, Enumerations, Checklists and Chorological Atlases of Different Areas. Cambridge: Cambridge University Press; 2001."},{"key":"107_CR2","doi-asserted-by":"crossref","unstructured":"Gruber TR. Toward principles for the design of ontologies used for knowledge sharing. Int J Human-Computer Stud. 1995; 43:5\u20136. doi:\n                    http:\/\/dx.doi.org\/10.1006\/ijhc.1995.1081\n                    \n                  .","DOI":"10.1006\/ijhc.1995.1081"},{"key":"107_CR3","volume-title":"Proceedings of the 1st International Conference on Formal Ontologies in Information Systems","author":"N Guarino","year":"1998","unstructured":"Guarino N. Formal ontology and information systems In: Guarino N, editor. Proceedings of the 1st International Conference on Formal Ontologies in Information Systems. Amsterdam: IOS Press: 1998. p. 3\u201315."},{"key":"107_CR4","doi-asserted-by":"crossref","unstructured":"Walls RL, Athreya B, Cooper L, Elser J, Gandolfo MA, Jaiswal P, Mungall CJ, Preece J, Rensing S, Smith B, Stevenson DW. Ontologies as integrative tools for plant science. Am J Botany. 2012; 99(8):1263\u20131275. doi:\n                    http:\/\/dx.doi.org\/10.3732\/ajb.1200222\n                    \n                  .","DOI":"10.3732\/ajb.1200222"},{"key":"107_CR5","doi-asserted-by":"crossref","unstructured":"Gkoutos GV, Green EC, Mallon AMM, Hancock JM, Davidson D. Using ontologies to describe mouse phenotypes. Genome Biol. 2005; 6(1):5. doi:\n                    http:\/\/dx.doi.org\/10.1186\/gb-2004-6-1-r8\n                    \n                  .","DOI":"10.1186\/gb-2004-6-1-r8"},{"key":"107_CR6","doi-asserted-by":"crossref","unstructured":"Hoehndorf R, Oellrich A, Rebholz-Schuhmann D. Interoperability between phenotype and anatomy ontologies. Bioinformatics; 26(24):3112\u2013118.","DOI":"10.1093\/bioinformatics\/btq578"},{"issue":"4","key":"107_CR7","doi-asserted-by":"publisher","first-page":"309","DOI":"10.1016\/j.websem.2008.05.001","volume":"6","author":"B Grau","year":"2008","unstructured":"Grau B, Horrocks I, Motik B, Parsia B, Patelschneider P, Sattler U. OWL 2: The next step for OWL. Web Semant Sci Serv Agents World Wide Web. 2008; 6(4):309\u201322.","journal-title":"Web Semant Sci Serv Agents World Wide Web"},{"key":"107_CR8","doi-asserted-by":"crossref","unstructured":"Kattge J, Diaz S, Lavorel S, Prentice C, Leadley P, Boenisch G, Garnier E, Westoby M, Reich PB, Wright IJ, Cornelissen JHC, Violle C, Harrison SP, van Bodegom PM, Reichstein M, Enquist BJ, Soudzilovskaia NA, Ackerly DD, Anand M, Atkin O, Bahn M, Baker TR, Baldocchi D, Bekker R, Blanco CC, Blonder B, Bond WJ, Bradstock R, Bunker DE, Casanoves F, Cavender-Bares J, Chambers JQ, Chapin IFS, Chave J, Coomes D, Cornwell WK, Craine JM, Dobrin BH, Duarte L, Durka W, Elser J, Esser G, Estiarte M, Fagan WF, Fang J, Fernandez-Mendez F, Fidelis A, Finegan B, Flores O, Ford H, Frank D, Freschet GT, Fyllas NM, Gallagher RV, Green WA, Gutierrez AG, Hickler T, Higgins SI, Hodgson JG, Jalili A, Jansen S, Joly CA, Kerkhoff AJ, Kirkup D, Kitajima K, Kleyer M, Klotz S, Knops JMH, Kramer K, Kuehn I, Kurokawa H, Laughlin D, Lee TD, Leishman M, Lens F, Lenz T, Lewis SL, Lloyd J, Llusia J, Louault F, Ma S, Mahecha MD, Manning P, Massad T, Medlyn BE, Messier J, Moles AT, Mueller SC, Nadrowski K, Naeem S, Niinemets U, Noellert S, Nueske A, Ogaya R, Oleksyn J, Onipchenko VG, Onoda Y, Ordonez J, Overbeck G, Ozinga WA, et al. Try - a global database of plant traits. Glob Chang Biol. 2011; 17(9):2905\u2013935. doi:\n                    http:\/\/dx.doi.org\/10.1111\/j.1365-2486.2011.02451.x\n                    \n                  .","DOI":"10.1111\/j.1365-2486.2011.02451.x"},{"key":"107_CR9","doi-asserted-by":"crossref","unstructured":"Parr CS, Wilson N, Leary P, Schulz K, Lans K, Walley L, Hammock J, Goddard A, Rice J, Studer M, Holmes J, Robert Corrigan J. The encyclopedia of life v2: Providing global access to knowledge about life on earth. Biodivers Data J. 2014; 2:1079. doi:\n                    http:\/\/dx.doi.org\/10.3897\/BDJ.2.e1079\n                    \n                  .","DOI":"10.3897\/BDJ.2.e1079"},{"key":"107_CR10","doi-asserted-by":"crossref","unstructured":"Vos R, Biserkov J, Balech B, Beard N, Blissett M, Brenninkmeijer C, van Dooren T, Eades D, Gosline G, Groom Q, Hamann T, Hettling H, Hoehndorf R, Holleman A, Hovenkamp P, Kelbert P, King D, Kirkup D, Lammers Y, DeMeulemeester T, Mietchen D, Miller J, Mounce R, Nicolson N, Page R, Pawlik A, Pereira S, Penev L, Richards K, Sautter G, Shorthouse D, T\u00e4htinen M, Weiland C, Williams A, Sierra S. Enriched biodiversity data as a resource and service. Biodivers Data J. 2014; 2:1125. doi:\n                    http:\/\/dx.doi.org\/10.3897\/BDJ.2.e1125\n                    \n                  .","DOI":"10.3897\/BDJ.2.e1125"},{"key":"107_CR11","doi-asserted-by":"crossref","unstructured":"Katayama T, Wilkinson MD, Aoki-Kinoshita KF, Kawashima S, Yamamoto Y, Yamaguchi A, Okamoto S, Kawano S, Kim JD, Wang Y, Wu H, Kano Y, Ono H, Bono H, Kocbek S, Aerts J, Akune Y, Antezana E, Arakawa K, Aranda B, Baran J, Bolleman J, Bonnal RJ, Buttigieg PL, Campbell MP, Chen Y-a, Chiba H, Cock PJ, Cohen KB, Constantin A, Duck G, Dumontier M, Fujisawa T, Fujiwara T, Goto N, Hoehndorf R, Igarashi Y, Itaya H, Ito M, Iwasaki W, Kala$\\check {s}$ M, Katoda T, Kim T, Kokubu A, Komiyama Y, Kotera M, Laibe C, Lapp H, L\u00fctteke T, Marshall MS, Mori T, Mori H, Morita M, Murakami K, Nakao M, Narimatsu H, Nishide H, Nishimura Y, Nystrom-Persson J, Ogishima S, Okamura Y, Okuda S, Oshita K, Packer NH, Prins P, Ranzinger R, Rocca-Serra P, Sansone S, Sawaki H, Shin SH, Splendiani A, Strozzi F, Tadaka S, Toukach P, Uchiyama I, Umezaki M, Vos R, Whetzel PL, Yamada I, Yamasaki C, Yamashita R, York WS, Zmasek CM, Kawamoto S, Takagi T. Biohackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J Biomed Semant. 2014; 5(1):1\u201313.","DOI":"10.1186\/2041-1480-5-5"},{"key":"107_CR12","doi-asserted-by":"crossref","unstructured":"van Steenis CGGJ, van Steenis-Kruseman MJ. Flora Malesiana. General Editor, C.G.G.J. van Steenis. Washington: Smithsonian Institution. (1950\u20132011). doi:\n                    http:\/\/dx.doi.org\/10.5962\/bhl.title.40744\n                    \n                  .","DOI":"10.5962\/bhl.title.40744"},{"key":"107_CR13","unstructured":"Aubr\u00e9ville A. Flore du Gabon, Vols 1-37. Flore du Gabon. Paris: Mus\u00e9um National d\u2019Histoire Naturelle. (1961\u20132004)."},{"key":"107_CR14","unstructured":"Sosef MSM, Florence J, Banakd LN, Bourobou HPB. Flore du Gabon, Vols 38-45. Flore du Gabon. Weikersheim: Margraf Publishers. (2009\u20132013)."},{"key":"107_CR15","unstructured":"Bamps P, Robyns W, van Belgi\u00eb NP. Flore d\u2019Afrique Centrale (Za\u00efre-Rwanda-Burundi). Flore d\u2019Afrique Centrale (Za\u00efre-Rwanda-Burundi). Meise: Jardin Botanique National de Belgique; 1948. \n                    http:\/\/www.br.fgov.be\/RESEARCH\/DATABASES\/FOCA\/index.php\n                    \n                  . Accessed 6 Nov 2016."},{"key":"107_CR16","unstructured":"Robyns W. Flore du Congo Belge et du Ruanda-Urundi. Flore d\u2019Afrique centrale. Yangambi: Institut national pour l\u2019\u00e9tude agronomique du Congo belge. (1901ff)."},{"key":"107_CR17","doi-asserted-by":"crossref","unstructured":"Avraham S, Tung CW, Ilic K, Jaiswal P, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Zapata F, Ware D. The plant ontology database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Res. 2008; 36(suppl 1):449\u201354. doi:\n                    http:\/\/dx.doi.org\/10.1093\/nar\/gkm908\n                    \n                  .","DOI":"10.1093\/nar\/gkm908"},{"key":"107_CR18","doi-asserted-by":"crossref","unstructured":"Hamann TD, M\u00fcller A, Roos MC, Sosef M, Smets E. Detailed mark-up of semi-monographic legacy taxonomic works using florml. Taxon; 63(2):377\u201393. (2014-04-01T00:00:00). doi:\n                    http:\/\/dx.doi.org\/10.12705\/632.11\n                    \n                  .","DOI":"10.12705\/632.11"},{"key":"107_CR19","unstructured":"Lucene A. A high-performance, full-featured text search engine library. 2005. \n                    http:\/\/lucene.apache.org\n                    \n                  . Accessed 6 Nov 2016."},{"key":"107_CR20","unstructured":"Klein D, Manning CD. Fast exact inference with a factored model for natural languages parsing. In: In Advances in Neural Information Processing Systems 15 (NIPS. Cambridge, London: MIT Press. p. 3\u201310."},{"key":"107_CR21","unstructured":"Horrocks I. OBO flat file format syntax and semantics and mapping to OWL Web Ontology Language. Technical report, University of Manchester (March 2007). \n                    http:\/\/www.cs.man.ac.uk\/~horrocks\/obo\/\n                    \n                  . Accessed 6 Nov 2016."},{"key":"107_CR22","volume-title":"Proceedings of OWLED 2007: Third International Workshop on OWL Experiences and Directions","author":"M Horridge","year":"2007","unstructured":"Horridge M, Bechhofer S, Noppens O. Igniting the OWL 1.1 touch paper: The OWL API. In: Proceedings of OWLED 2007: Third International Workshop on OWL Experiences and Directions. Aachen: CEUR-WS.org: 2007. ISSN 1613\u20130073."},{"key":"107_CR23","doi-asserted-by":"crossref","unstructured":"Kazakov Y, Kr\u00f6tzsch M, Simancik F. The incredible elk. J Autom Reason. 2014; 53(1):1\u201361. doi:\n                    http:\/\/dx.doi.org\/10.1007\/s10817-013-9296-3\n                    \n                  .","DOI":"10.1007\/s10817-013-9296-3"},{"key":"107_CR24","unstructured":"Motik B, Grau BC, Horrocks I, Wu Z, Fokoue A, Lutz C. Owl 2 web ontology language: Profiles (Second Edition). 2012. \n                    https:\/\/www.w3.org\/TR\/owl2-profiles\/\n                    \n                  . Accessed 6 Nov 2016."},{"key":"107_CR25","doi-asserted-by":"crossref","unstructured":"Dressler S, Schmidt M, Zizka G. Introducing african plants\u2013a photo guide\u2013an interactive photo data base and rapid identification tool for continental africa. Taxon. 2014; 63(5):5.","DOI":"10.12705\/635.26"},{"key":"107_CR26","doi-asserted-by":"crossref","unstructured":"Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Cs\u00f6sz S, Cui H, Dahdul W, Das S, Dececchi TA, Dettai A, Diogo R, Druzinsky RE, Dumontier M, Franz NM, Friedrich F, Gkoutos GV, Haendel M, Harmon LJ, Hayamizu TF, He Y, Hines HM, Ibrahim N, Jackson LM, Jaiswal P, James-Zorn C, K\u00f6hler S, Lecointre G, Lapp H, Lawrence CJ, Le Nov\u00e9re N, Lundberg JG, Macklin J, Mast AR, Midford PE, Mik\u00f3 I, Mungall CJ, Oellrich A, Osumi-Sutherland D, Parkinson H, Ram\u00edrez MJ, Richter S, Robinson PN, Ruttenberg A, Schulz KS, Segerdell E, Seltmann KC, Sharkey MJ, Smith AD, Smith B, Specht CD, Squires RB, Thacker RW, Thessen A, Fernandez-Triana J, Vihinen M, Vize PD, Vogt L, Wall CE, Walls RL, Westerfeld M, Wharton RA, Wirkner CS, Woolley JB, Yoder MJ, Zorn AM, Mabee P. Finding our way through phenotypes. PLoS Biol. 2015; 13(1):1002033. doi:\n                    http:\/\/dx.doi.org\/10.1371\/journal.pbio.1002033\n                    \n                  .","DOI":"10.1371\/journal.pbio.1002033"},{"key":"107_CR27","doi-asserted-by":"publisher","first-page":"969","DOI":"10.1038\/ng.3360","volume":"47","author":"MH de Angelis","year":"2015","unstructured":"de Angelis MH, Nicholson G, Selloum M, White JK, Morgan H, Ramirez-Solis R, Sorg T, Wells S, Fuchs H, Fray M, Adams DJ, Adams NC, Adler T, Aguilar-Pimentel A, Ali-Hadji D, Amann G, Andr\u00e9 P, Atkins S, Auburtin A, Ayadi A, Becker J, Becker L, Bedu E, Bekeredjian R, Birling MC, Blake A, Bottomley J, Bowl MR, Brault V, Busch DH, Bussell JN, Calzada-Wack J, Cater H, Champy MF, Charles P, Chevalier C, Chiani F, Codner GF, Combe R, Cox R, Dalloneau E, Dierich A, Fenza AD, Doe B, Duchon A, Eickelberg O, Esapa CT, Fertak LE, Feigel T, Emelyanova I, Estabel J, Favor J, Flenniken A, Gambadoro A, Garrett L, Gates H, Gerdin AK, Gkoutos G, Greenaway S, Glasl L, Goetz P, Cruz IGD, G\u00f6tz A, Graw J, Guimond A, Hans W, Hicks G, H\u00f6lter SM, H\u00f6fler H, Hancock JM, Hoehndorf R, Hough T, Houghton R, Hurt A, Ivandic B, Jacobs H, Jacquot S, Jones N, Karp NA, Katus HA, Kitchen S, Klein-Rodewald T, Klingenspor M, Klopstock T, Lalanne V, Leblanc S, Lengger C, le Marchand E, Ludwig T, Lux A, McKerlie C, Maier H, Mandel JL, Marschall S, Mark M, Melvin DG, Meziane H, Micklich K, Mittelhauser C, Monassier L, Moulaert D, Muller S, Naton B, Neff F, Nolan PM, Nutter LMJ, Ollert M, Pavlovic G, Pellegata NS, Peter E, Petit-Demouli\u00e8re B, Pickard A, Podrini C, Potter P, Pouilly L, Puk O, Richardson D, Rousseau S, Quintanilla-Fend L, Quwailid MM, Racz I, Rathkolb B, Riet F, Rossant J, Roux M, Rozman J, Ryder E, Salisbury J, Santos L, Sch\u00e4ble KH, Schiller E, Schrewe A, Schulz H, Steinkamp R, Simon M, Stewart M, St\u00f6ger C, St\u00f6ger T, Sun M, Sunter D, Teboul L, Tilly I, Tocchini-Valentini GP, Tost M, Treise I, Vasseur L, Velot E, Vogt-Weisenhorn D, Wagner C, Walling A, Wattenhofer-Donze M, Weber B, Wendling O, Westerberg H, Willersh\u00e4user M, Wolf E, Wolter A, Wood J, Wurst W, \u00d6nder Yildirim A, Zeh R, Zimmer A, Zimprich A, Holmes C, Steel KP, Herault Y, Gailus-Durner V, Mallon AM, Brown SDM. Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics. Nat Genet. 2015; 47:969\u2013978.","journal-title":"Nat Genet"},{"issue":"1","key":"107_CR28","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1186\/s13007-015-0053-y","volume":"11","author":"A Oellrich","year":"2015","unstructured":"Oellrich A, Walls R, Cannon E, Cannon S, Cooper L, Gardiner J, Gkoutos G, Harper L, He M, Hoehndorf R, Jaiswal P, Kalberer S, Lloyd J, Meinke D, Menda N, Moore L, Nelson R, Pujar A, Lawrence C, Huala E. An ontology approach to comparative phenomics in plants. Plant Methods. 2015; 11(1):10. Anika Oellrich and Ramona L Walls contributed equally to this work.","journal-title":"Plant Methods"},{"key":"107_CR29","doi-asserted-by":"publisher","first-page":"26","DOI":"10.1186\/s12859-015-0456-9","volume":"16","author":"R Hoehndorf","year":"2015","unstructured":"Hoehndorf R, Slater L, Schofield PN, Gkoutos GV. Aber-OWL: a framework for ontology-based data access in biology. BMC Bioinforma. 2015; 16:26.","journal-title":"BMC Bioinforma"},{"key":"107_CR30","doi-asserted-by":"crossref","unstructured":"Laporte MA, IsabelleMougenot, Garnier E. Thesauform\u2013traits: A web based collaborative tool to develop a thesaurus for plant functional diversity research. Eco Inform. 2012; 11:34\u201344. doi:\n                    http:\/\/dx.doi.org\/10.1016\/j.ecoinf.2012.04.004\n                    \n                  . Data platforms in integrative biodiversity research.","DOI":"10.1016\/j.ecoinf.2012.04.004"},{"key":"107_CR31","doi-asserted-by":"crossref","unstructured":"Shrestha R, Arnaud E, Mauleon R, Senger M, Davenport GF, Hancock D, Morrison N, Bruskiewich R, McLaren G. Multifunctional crop trait ontology for breeders\u2019 data: field book, annotation, data discovery and semantic enrichment of the literature. AoB Plants. 2010. doi:\n                    http:\/\/dx.doi.org\/10.1093\/aobpla\/plq008\n                    \n                  .","DOI":"10.1093\/aobpla\/plq008"},{"key":"107_CR32","unstructured":"Arnaud E, Cooper L, Shrestha R, Menda N, Nelson RT, Matteis L, Skofic M, Bastow R, Jaiswal P, Mueller L, McLaren G. Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotype. In: Proceedings of the International Conference on Knowledge Engineering and Ontology Development (KEOD2012). Set\u00fabal: SCITEPRESS."},{"key":"107_CR33","volume-title":"Information Access Evaluation. Multilinguality, Multimodality, and Interaction. Lecture Notes in Computer Science","author":"A Joly","year":"2014","unstructured":"Joly A, Go\u00ebau H, Glotin H, Spampinato C, Bonnet P, Vellinga WP, Planque R, Rauber A, Fisher R, M\u00fcller H. Lifeclef 2014: Multimedia life species identification challenges In: Kanoulas E, Lupu M, Clough P, Sanderson M, Hall M, Hanbury A, Toms E, editors. Information Access Evaluation. Multilinguality, Multimodality, and Interaction. Lecture Notes in Computer Science. Berlin: Springer: 2014. p. 229\u201349."},{"key":"107_CR34","unstructured":"Steinke KH. iDigBio Augmenting OCR Workshop: Image analysis of herbarium specimens (Herbar-Digital). 2012. \n                    https:\/\/www.idigbio.org\n                    \n                  . Accessed 6 Nov 2016."},{"key":"107_CR35","doi-asserted-by":"crossref","unstructured":"Beaman R, Cellinese N. Mass digitization of scientific collections: New opportunities to transform the use of biological specimens and underwrite biodiversity science. ZooKeys. 2012; 209:7\u201317. doi:\n                    http:\/\/dx.doi.org\/10.3897\/zookeys.209.3313\n                    \n                  .","DOI":"10.3897\/zookeys.209.3313"},{"key":"107_CR36","doi-asserted-by":"crossref","unstructured":"Boudaoud A, Burian A, Borowska-Wykret D, Uyttewaal M, Wrzalik R, Kwiatkowska D, Hamant O. FibrilTool, an ImageJ plug-in to quantify fibrillar structures in raw microscopy images. Nat Protoc; 9(2):457\u201363.","DOI":"10.1038\/nprot.2014.024"},{"key":"107_CR37","unstructured":"Belhajjame K, Cheney J, Corsar D, Garijo D, Soiland-Reyes S, Zednik S, Zhao J. 2012. Prov-o: The prov ontology. Technical report. \n                    http:\/\/www.w3.org\/TR\/prov-o\/\n                    \n                  . Accessed 6 Nov 2016."},{"key":"107_CR38","doi-asserted-by":"crossref","unstructured":"Walls RL, Deck J, Guralnick R, Baskauf S, Beaman R, Blum S, Bowers S, Buttigieg PL, Davies N, Endresen D, Gandolfo MA, Hanner R, Janning A, Krishtalka L, Matsunaga A, Midford P, Morrison N, Tuama \u00c9\u00d3, Schildhauer M, Smith B, Stucky BJ, Thomer A, Wieczorek J, Whitacre J, Wooley J. Semantics in support of biodiversity knowledge discovery: An introduction to the biological collections ontology and related ontologies. PLoS ONE. 2014; 9(3):89606. doi:\n                    http:\/\/dx.doi.org\/10.1371\/journal.pone.0089606\n                    \n                  .","DOI":"10.1371\/journal.pone.0089606"},{"key":"107_CR39","doi-asserted-by":"crossref","unstructured":"Ison J, Kala\u015b M, Jonassen I, Bolser D, Uludag M, McWilliam H, Malone J, Lopez R, Pettifer S, Rice P. Edam: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. Bioinformatics. 2013; 29(10):1325\u20131332. doi:\n                    http:\/\/dx.doi.org\/10.1093\/bioinformatics\/btt113\n                    \n                  .","DOI":"10.1093\/bioinformatics\/btt113"},{"key":"107_CR40","doi-asserted-by":"crossref","unstructured":"Buttigieg P, Morrison N, Smith B, Mungall C, Lewis S, the ENVO Consortium:. J Biomed Semant. 2013; 4(1):43. doi:\n                    http:\/\/dx.doi.org\/10.1186\/2041-1480-4-43\n                    \n                  .","DOI":"10.1186\/2041-1480-4-43"},{"key":"107_CR41","doi-asserted-by":"crossref","unstructured":"Pafilis E, Frankild SP, Schnetzer J, Fanini L, Faulwetter S, Pavloudi C, Vasileiadou K, Leary P, Hammock J, Schulz K, Parr CS, Arvanitidis C, Jensen LJ. Environments and eol: identification of environment ontology terms in text and the annotation of the encyclopedia of life. Bioinformatics. 2015; 31(11):1872\u20131874. doi:\n                    http:\/\/dx.doi.org\/10.1093\/bioinformatics\/btv045\n                    \n                  .","DOI":"10.1093\/bioinformatics\/btv045"},{"issue":"1","key":"107_CR42","doi-asserted-by":"publisher","first-page":"2","DOI":"10.1186\/gb-2010-11-1-r2","volume":"11","author":"C Mungall","year":"2010","unstructured":"Mungall C, Gkoutos G, Smith C, Haendel M, Lewis S, Ashburner M. Integrating phenotype ontologies across multiple species. Genome Biol. 2010; 11(1):2.","journal-title":"Genome Biol"},{"key":"107_CR43","doi-asserted-by":"crossref","unstructured":"Smith CL, Goldsmith C-AW, Eppig JT. The mammalian phenotype ontology as a tool for annotating, analyzing and comparing phenotypic information. Genome Biol. 2004; 6(1):7. doi:\n                    http:\/\/dx.doi.org\/10.1186\/gb-2004-6-1-r7\n                    \n                  .","DOI":"10.1186\/gb-2004-6-1-r7"},{"key":"107_CR44","doi-asserted-by":"crossref","unstructured":"K\u00f6hler S, Doelken SC, Mungall CJ, Bauer S, Firth HV, Bailleul-Forestier I, Black GCM, Brown DL, Brudno M, Campbell J, FitzPatrick DR, Eppig JT, Jackson AP, Freson K, Girdea M, Helbig I, Hurst JA, J\u00e4hn J, Jackson LG, Kelly AM, Ledbetter DH, Mansour S, Martin CL, Moss C, Mumford A, Ouwehand WH, Park SM, Riggs ER, Scott RH, Sisodiya S, Vooren SV, Wapner RJ, Wilkie AOM, Wright CF, Vulto-van Silfhout AT, Leeuw Nd, de Vries BBA, Washingthon NL, Smith CL, Westerfield M, Schofield P, Ruef BJ, Gkoutos GV, Haendel M, Smedley D, Lewis SE, Robinson PN. The human phenotype ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res; 42(D1):966\u201374.","DOI":"10.1093\/nar\/gkt1026"},{"key":"107_CR45","doi-asserted-by":"crossref","unstructured":"Dececchi TA, Balhoff JP, Lapp H, Mabee PM. Toward synthesizing our knowledge of morphology: Using ontologies and machine reasoning to extract presence\/absence evolutionary phenotypes across studies. Syst Biol. 2015; 64(6):936\u201352. doi:\n                    http:\/\/dx.doi.org\/10.1093\/sysbio\/syv031\n                    \n                  .","DOI":"10.1093\/sysbio\/syv031"},{"key":"107_CR46","doi-asserted-by":"crossref","unstructured":"Andrade AQ, Blond\u00e9 W, Hastings J, Schulz S. Process attributes in bio-ontologies. BMC Bioinformatics. 2012; 13(1):1\u201311. doi:\n                    http:\/\/dx.doi.org\/10.1186\/1471-2105-13-217\n                    \n                  .","DOI":"10.1186\/1471-2105-13-217"},{"key":"107_CR47","doi-asserted-by":"crossref","unstructured":"K\u00f6hler S, Doelken S, Ruef B, Bauer S, Washington N, Westerfield M, Gkoutos G, Schofield P, Smedley D, Lewis S, Robinson P, Mungall C. Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research [version 2; referees: 3 approved]. F1000Research. 2014;2(30). doi:\n                    http:\/\/dx.doi.org\/10.12688\/f1000research.2-30.v2\n                    \n                  .","DOI":"10.12688\/f1000research.2-30.v2"},{"issue":"18","key":"107_CR48","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1093\/nar\/gkr538","volume":"39","author":"R Hoehndorf","year":"2011","unstructured":"Hoehndorf R, Schofield PN, Gkoutos GV. Phenomenet: a whole-phenome approach to disease gene discovery. Nucleic Acids Res. 2011; 39(18):119.","journal-title":"Nucleic Acids Res"},{"key":"107_CR49","doi-asserted-by":"crossref","unstructured":"Cui H, Boufford D, Selden P. Semantic annotation of biosystematics literature without training examples. J Am Soc Inform Sci Technol. 2010; 61(3):522\u201342. doi:\n                    http:\/\/dx.doi.org\/10.1002\/asi.21246\n                    \n                  .","DOI":"10.1002\/asi.21246"},{"key":"107_CR50","doi-asserted-by":"crossref","unstructured":"Cui H. Charaparser for fine-grained semantic annotation of organism morphological descriptions. J Am Soc Inform Sci Technol. 2012; 63(4):738\u201354. doi:\n                    http:\/\/dx.doi.org\/10.1002\/asi.22618\n                    \n                  .","DOI":"10.1002\/asi.22618"},{"issue":"2","key":"107_CR51","doi-asserted-by":"publisher","first-page":"317","DOI":"10.2307\/1224436","volume":"48","author":"J Croft","year":"1999","unstructured":"Croft J, Cross N, Hinchcliffe S, Lughadha EN, Stevens PF, West JG, Whitbread G. Plant names for the 21st century: The international plant names index, a distributed data source of general accessibility. Taxon. 1999; 48(2):317\u201324.","journal-title":"Taxon"},{"issue":"Database issue","key":"107_CR52","doi-asserted-by":"publisher","first-page":"580","DOI":"10.1093\/nar\/gkr1097","volume":"40","author":"N Juty","year":"2012","unstructured":"Juty N, Le Nov\u00e8re N, Laibe C. Identifiers.org and miriam registry: community resources to provide persistent identification. Nucleic Acids Res. 2012; 40(Database issue):580\u20136. doi:\n                    http:\/\/dx.doi.org\/10.1093\/nar\/gkr1097\n                    \n                  .","journal-title":"Nucleic Acids Res"}],"container-title":["Journal of Biomedical Semantics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s13326-016-0107-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s13326-016-0107-8\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s13326-016-0107-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,15]],"date-time":"2020-05-15T13:37:06Z","timestamp":1589549826000},"score":1,"resource":{"primary":{"URL":"https:\/\/jbiomedsem.biomedcentral.com\/articles\/10.1186\/s13326-016-0107-8"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,11,14]]},"references-count":52,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2016,12]]}},"alternative-id":["107"],"URL":"https:\/\/doi.org\/10.1186\/s13326-016-0107-8","relation":{},"ISSN":["2041-1480"],"issn-type":[{"value":"2041-1480","type":"electronic"}],"subject":[],"published":{"date-parts":[[2016,11,14]]},"assertion":[{"value":"2 December 2015","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"1 November 2016","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"14 November 2016","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"65"}}