{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,26]],"date-time":"2025-06-26T04:13:13Z","timestamp":1750911193299,"version":"3.41.0"},"reference-count":26,"publisher":"Springer Science and Business Media LLC","issue":"1","funder":[{"DOI":"10.13039\/501100003329","name":"Ministerio de Econom\u00eda y Competitividad","doi-asserted-by":"publisher","award":["TIN2013-46238-C4-2-R"],"award-info":[{"award-number":["TIN2013-46238-C4-2-R"]}],"id":[{"id":"10.13039\/501100003329","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004963","name":"Seventh Framework Programme","doi-asserted-by":"publisher","award":["FP7-ICT-2011.5.3-288048"],"award-info":[{"award-number":["FP7-ICT-2011.5.3-288048"]}],"id":[{"id":"10.13039\/501100004963","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004587","name":"Instituto de Salud Carlos III","doi-asserted-by":"publisher","award":["PI13\/02020"],"award-info":[{"award-number":["PI13\/02020"]}],"id":[{"id":"10.13039\/501100004587","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["J Biomed Semant"],"published-print":{"date-parts":[[2017,12]]},"DOI":"10.1186\/s13326-017-0155-8","type":"journal-article","created":{"date-parts":[[2017,10,5]],"date-time":"2017-10-05T11:36:54Z","timestamp":1507203414000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":7,"title":["Querying clinical data in HL7 RIM based relational model with morph-RDB"],"prefix":"10.1186","volume":"8","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9292-4010","authenticated-orcid":false,"given":"Freddy","family":"Priyatna","sequence":"first","affiliation":[]},{"given":"Raul","family":"Alonso-Calvo","sequence":"additional","affiliation":[]},{"given":"Sergio","family":"Paraiso-Medina","sequence":"additional","affiliation":[]},{"given":"Oscar","family":"Corcho","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2017,10,5]]},"reference":[{"issue":"7471","key":"155_CR1","doi-asserted-by":"crossref","first-page":"317","DOI":"10.1038\/nature12564","volume":"502","author":"LM McShane","year":"2013","unstructured":"McShane LM, Cavenagh MM, Lively TG, Eberhard DA, Bigbee WL, Williams PM, Mesirov JP, Polley M-YC, Kim KY, Tricoli JV, et al. Criteria for the use of omics-based predictors in clinical trials. Nature. 2013; 502(7471):317\u201320.","journal-title":"Nature"},{"key":"155_CR2","doi-asserted-by":"crossref","first-page":"126","DOI":"10.1038\/sj.clpt.6100029","volume":"81","author":"WR Hersh","year":"2007","unstructured":"Hersh WR. Adding value to the electronic health record through secondary use of data for quality assurance, research, and surveillance. Clin Pharmacol Ther. 2007; 81:126\u20138.","journal-title":"Clin Pharmacol Ther"},{"key":"155_CR3","doi-asserted-by":"crossref","unstructured":"Kaufman J. Healthcare and life sciences standards overview-technology for life: NC symposium on biotechnology and bioinformatics. In: Biotechnology and Bioinformatics, 2004. Proceedings. Technology for Life: North Carolina Symposium On. IEEE: 2004. p. 31\u201341.","DOI":"10.1109\/SBB.2004.1364367"},{"issue":"4","key":"155_CR4","doi-asserted-by":"crossref","first-page":"253","DOI":"10.2174\/157489310794072481","volume":"5","author":"A Anguita","year":"2010","unstructured":"Anguita A, Martin L, Perez-Rey D, Maojo V. A review of methods and tools for database integration in biomedicine. Curr Bioinforma. 2010; 5(4):253\u201369.","journal-title":"Curr Bioinforma"},{"issue":"6","key":"155_CR5","first-page":"27","volume":"16","author":"GW Jr Beeler","year":"1998","unstructured":"Jr Beeler GW. On the Rim: the making of HL7\u2019s Reference Information Model. MD Comput Comput Med Pract. 1998; 16(6):27\u20139.","journal-title":"MD Comput Comput Med Pract"},{"issue":"2","key":"155_CR6","doi-asserted-by":"crossref","first-page":"124","DOI":"10.1136\/jamia.2009.000893","volume":"17","author":"SN Murphy","year":"2010","unstructured":"Murphy SN, Weber G, Mendis M, Gainer V, Chueh HC, Churchill S, Kohane I. Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2). J Am Med Inform Assoc. 2010; 17(2):124\u201330.","journal-title":"J Am Med Inform Assoc"},{"issue":"9","key":"155_CR7","doi-asserted-by":"crossref","first-page":"600","DOI":"10.7326\/0003-4819-153-9-201011020-00010","volume":"153","author":"PE Stang","year":"2010","unstructured":"Stang PE, Ryan PB, Racoosin JA, Overhage JM, Hartzema AG, Reich C, Welebob E, Scarnecchia T, Woodcock J. Advancing the science for active surveillance: rationale and design for the observational medical outcomes partnership. Ann Intern Med. 2010; 153(9):600\u20136.","journal-title":"Ann Intern Med"},{"issue":"2","key":"155_CR8","doi-asserted-by":"crossref","first-page":"138","DOI":"10.1197\/jamia.M2522","volume":"15","author":"S Oster","year":"2008","unstructured":"Oster S, Langella S, Hastings S, Ervin D, Madduri R, Phillips J, Kurc T, Siebenlist F, Covitz P, Shanbhag K, et al. cagrid 1.0: an enterprise grid infrastructure for biomedical research. J Am Med Inform Assoc. 2008; 15(2):138\u201349.","journal-title":"J Am Med Inform Assoc"},{"key":"155_CR9","doi-asserted-by":"crossref","unstructured":"Riazanov A, Klein A, Shaban-Nejad A, Rose GW, Forster AJ, Buckeridge DL, Baker CJ. Semantic querying of relational data for clinical intelligence: a semantic web services-based approach. J Biomed Semant. 2013;4(9). Enabling information re-Use by linking clinical REsearch and Care - Eureca Project. http:\/\/eurecaproject.eu\/ . Accessed 2 Oct 2017.","DOI":"10.1186\/2041-1480-4-9"},{"key":"155_CR10","unstructured":"Institut Jules Bordet. http:\/\/www.bordet.be\/ . Accessed 17 May 2016."},{"key":"155_CR11","unstructured":"MAASTRO Clinic. http:\/\/www.maastro.nl\/ . Accessed 17 May 2016."},{"key":"155_CR12","unstructured":"German Breast Group. http:\/\/www.germanbreastgroup.de\/ . Accessed 17 May 2016."},{"issue":"3","key":"155_CR13","doi-asserted-by":"crossref","first-page":"1061","DOI":"10.1109\/JBHI.2014.2357025","volume":"19","author":"S Paraiso-Medina","year":"2015","unstructured":"Paraiso-Medina S, Perez-Rey D, Bucur A, Claerhout B, Alonso-Calvo R. Semantic normalization and query abstraction based on SNOMED-CT and HL7: Supporting multi-centric clinical trials. IEEE J Biomed Health Inform. 2015; 19(3):1061\u20137.","journal-title":"IEEE J Biomed Health Inform"},{"key":"155_CR14","first-page":"971","volume":"192","author":"JM Moratilla","year":"2012","unstructured":"Moratilla JM, Alonso-Calvo R, Molina-Vaquero G, Paraiso-Medina S, Perez-Rey D, Maojo V. A data model based on semantically enhanced HL7 RIM for sharing patient data of breast cancer clinical trials. Stud Health Technol Inform. 2012; 192:971\u20131.","journal-title":"Stud Health Technol Inform"},{"key":"155_CR15","unstructured":"Bizer C, Cyganiak R. D2R server-publishing relational databases on the semantic web. In: Poster at the 5th International Semantic Web Conference: 2006."},{"key":"155_CR16","doi-asserted-by":"crossref","unstructured":"Gray AJ, Gray N, Ounis I. Can RDB2RDF tools feasibily expose large science archives for data integration? In: Proceedings of the 6th European Semantic Web Conference on The Semantic Web: Research and Applications. Springer-Verlag: 2009. p. 491\u2013505.","DOI":"10.1007\/978-3-642-02121-3_37"},{"key":"155_CR17","doi-asserted-by":"crossref","unstructured":"Priyatna F, Corcho O, Sequeda JF. Formalisation and experiences of R2RML-based SPARQL to SQL query translation using morph. In: Proceedings of the 23rd International World Wide Web Conference: 2014.","DOI":"10.1145\/2566486.2567981"},{"key":"155_CR18","unstructured":"Das S, Sundara S, Cyganiak R. R2RML: RDB to RDFmapping language. W3C Recommendation 27 September 2012."},{"issue":"D1","key":"155_CR19","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1093\/nar\/gkr1196","volume":"40","author":"MY Galperin","year":"2012","unstructured":"Galperin MY, Fern\u00e1ndez-Su\u00e1rez XM. The 2012 nucleic acids research database issue and the online molecular biology database collection. Nucleic Acids Res. 2012; 40(D1):1\u20138.","journal-title":"Nucleic Acids Res"},{"issue":"2","key":"155_CR20","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1016\/S1386-5056(02)00103-X","volume":"69","author":"JF Coyle","year":"2003","unstructured":"Coyle JF, Mori AR, Huff SM. Standards for detailed clinical models as the basis for medical data exchange and decision support. Int J Med Inform. 2003; 69(2):157\u201374.","journal-title":"Int J Med Inform"},{"key":"155_CR21","unstructured":"Gunther SCHADOW CNM. The hl7 reference information model under scrutiny. In: Ubiquity: Technologies for Better Health in Aging Societies: Proceedings of MIE2006. vol. 124. IOS Press: 2006. p. 151. https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/17108519 ."},{"issue":"1","key":"155_CR22","doi-asserted-by":"crossref","first-page":"151","DOI":"10.1016\/S1386-5056(97)00121-4","volume":"48","author":"GW Beeler","year":"1998","unstructured":"Beeler GW. Hl7 version 3\u2014an object-oriented methodology for collaborative standards development. Int J Med Inform. 1998; 48(1):151\u201361.","journal-title":"Int J Med Inform"},{"key":"155_CR23","unstructured":"HL, 7RIM model. http:\/\/www.gib.fi.upm.es\/hl7rim-common-data-model\/ . Accessed 17 May 2016."},{"key":"155_CR24","unstructured":"Morph Suite. http:\/\/www.oeg-upm.net\/index.php\/en\/technologies\/334-morph . Accessed 17 May 2016."},{"issue":"10","key":"155_CR25","doi-asserted-by":"crossref","first-page":"973","DOI":"10.1016\/j.datak.2009.04.001","volume":"68","author":"A Chebotko","year":"2009","unstructured":"Chebotko A, Lu S, Fotouhi F. Semantics preserving SPARQL-to-SQL translation. Data Knowl Eng. 2009; 68(10):973\u20131000.","journal-title":"Data Knowl Eng"},{"key":"155_CR26","unstructured":"Arenas M, Bertails A, Prud\u2019hommeaux E, Sequeda J. A Direct Mapping of Relational Data to RDF. W3C Recommendation 27 September 2012."}],"container-title":["Journal of Biomedical Semantics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s13326-017-0155-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,26]],"date-time":"2025-06-26T00:44:05Z","timestamp":1750898645000},"score":1,"resource":{"primary":{"URL":"http:\/\/jbiomedsem.biomedcentral.com\/articles\/10.1186\/s13326-017-0155-8"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,10,5]]},"references-count":26,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2017,12]]}},"alternative-id":["155"],"URL":"https:\/\/doi.org\/10.1186\/s13326-017-0155-8","relation":{},"ISSN":["2041-1480"],"issn-type":[{"type":"electronic","value":"2041-1480"}],"subject":[],"published":{"date-parts":[[2017,10,5]]},"article-number":"49"}}