{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,6]],"date-time":"2026-05-06T22:28:39Z","timestamp":1778106519086,"version":"3.51.4"},"reference-count":59,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2018,1,15]],"date-time":"2018-01-15T00:00:00Z","timestamp":1515974400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2018,1,15]],"date-time":"2018-01-15T00:00:00Z","timestamp":1515974400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100010666","name":"H2020 Research Infrastructures","doi-asserted-by":"publisher","award":["676559 ELIXIR-EXCELERATE"],"award-info":[{"award-number":["676559 ELIXIR-EXCELERATE"]}],"id":[{"id":"10.13039\/100010666","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001871","name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","doi-asserted-by":"publisher","award":["PTDC\/EEI-ESS\/4633\/2014"],"award-info":[{"award-number":["PTDC\/EEI-ESS\/4633\/2014"]}],"id":[{"id":"10.13039\/501100001871","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001871","name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","doi-asserted-by":"publisher","award":["UID\/CEC\/00408\/2013"],"award-info":[{"award-number":["UID\/CEC\/00408\/2013"]}],"id":[{"id":"10.13039\/501100001871","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001871","name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","doi-asserted-by":"publisher","award":["UID\/CEC\/00408\/2013"],"award-info":[{"award-number":["UID\/CEC\/00408\/2013"]}],"id":[{"id":"10.13039\/501100001871","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001871","name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","doi-asserted-by":"publisher","award":["UID\/CEC\/00408\/2013"],"award-info":[{"award-number":["UID\/CEC\/00408\/2013"]}],"id":[{"id":"10.13039\/501100001871","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["III-1618126"],"award-info":[{"award-number":["III-1618126"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["CNS-1646395"],"award-info":[{"award-number":["CNS-1646395"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["CCF-1561144"],"award-info":[{"award-number":["CCF-1561144"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["III-1213038"],"award-info":[{"award-number":["III-1213038"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000865","name":"Bill and Melinda Gates Foundation","doi-asserted-by":"publisher","award":["Grand Challenges Explorations grant"],"award-info":[{"award-number":["Grand Challenges Explorations grant"]}],"id":[{"id":"10.13039\/100000865","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["J Biomed Semant"],"published-print":{"date-parts":[[2018,12]]},"DOI":"10.1186\/s13326-017-0170-9","type":"journal-article","created":{"date-parts":[[2018,1,15]],"date-time":"2018-01-15T12:11:26Z","timestamp":1516018286000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":37,"title":["Tackling the challenges of matching biomedical ontologies"],"prefix":"10.1186","volume":"9","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-1511-277X","authenticated-orcid":false,"given":"Daniel","family":"Faria","sequence":"first","affiliation":[]},{"given":"Catia","family":"Pesquita","sequence":"additional","affiliation":[]},{"given":"Isabela","family":"Mott","sequence":"additional","affiliation":[]},{"given":"Catarina","family":"Martins","sequence":"additional","affiliation":[]},{"given":"Francisco M.","family":"Couto","sequence":"additional","affiliation":[]},{"given":"Isabel F.","family":"Cruz","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2018,1,15]]},"reference":[{"issue":"Web Server issu","key":"170_CR1","first-page":"170","volume":"37","author":"N Fridman Noy","year":"2009","unstructured":"Fridman Noy N, Shah NH, Whetzel PL, Dai B, Dorf M, Griffith N, Jonquet C, Rubin DL, Storey M-AD, Chute CG, Musen MA. BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Res. 2009; 37(Web Server issue):170\u20133.","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"170_CR2","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1186\/gb-2012-13-1-r5","volume":"13","author":"CJ Mungall","year":"2012","unstructured":"Mungall CJ, Torniai C, Gkoutos GV, Lewis S, Haendel MA. Uberon, an Integrative Multi-species Anatomy Ontology. Genome Biol. 2012; 13(1):5.","journal-title":"Genome Biol"},{"issue":"6","key":"170_CR3","doi-asserted-by":"publisher","first-page":"478","DOI":"10.1016\/j.jbi.2003.11.007","volume":"36","author":"C Rosse","year":"2003","unstructured":"Rosse C, Mejino Jr JL, et al. A reference ontology for biomedical informatics: the foundational model of anatomy. J Biomed Inform. 2003; 36(6):478\u2013500.","journal-title":"J Biomed Inform"},{"issue":"1","key":"170_CR4","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1016\/j.websem.2003.07.007","volume":"1","author":"J Golbeck","year":"2003","unstructured":"Golbeck J, Fragoso G, Hartel FW, Hendler JA, Oberthaler J, Parsia B. The National Cancer Institute\u2019s Th\u00e9saurus and Ontology. J Web Sem. 2003; 1(1):75\u201380.","journal-title":"J Web Sem"},{"key":"170_CR5","first-page":"279","volume":"121","author":"K Donnelly","year":"2006","unstructured":"Donnelly K. SNOMED-CT: The advanced terminology and coding system for eHealth. Studies Health Technol Inform. 2006; 121:279.","journal-title":"Studies Health Technol Inform"},{"key":"170_CR6","unstructured":"Pesquita C, Faria D, Santos E, Couto FM. To repair or not to repair: reconciling correctness and coherence in ontology reference alignments. In: ISWC Workshop on Ontology Matching (OM), vol. 1111: 2013. p. 13\u201324. Online: \n                    www.CEUR-WS.org\n                    \n                  ."},{"key":"170_CR7","unstructured":"Horridge M, Parsia B, Sattler U. The state of bio-medical ontologies. In: Bio-Ontologies 2011: 2011. p. 135. Online: \n                    www.bio-ontologies.knowledgeblog.org\n                    \n                  ."},{"issue":"11","key":"170_CR8","doi-asserted-by":"publisher","first-page":"e111226","DOI":"10.1371\/journal.pone.0111226","volume":"9","author":"D Faria","year":"2014","unstructured":"Faria D, Pesquita C, Santos E, Cruz IF, Couto FM. Automatic background knowledge selection for matching biomedical ontologies. PLoS ONE. 2014; 9(11):e111226.","journal-title":"PLoS ONE"},{"key":"170_CR9","unstructured":"Gro\u00df A, Hartung M, Kirsten T, Rahm E. Mapping composition for matching large life science ontologies. In: International Conference on Biomedical Ontology (ICBO), vol. 833: 2011. p. 109\u201316. Online: \n                    www.CEUR-WS.org\n                    \n                  ."},{"issue":"11","key":"170_CR10","doi-asserted-by":"publisher","first-page":"1251","DOI":"10.1038\/nbt1346","volume":"25","author":"B Smith","year":"2007","unstructured":"Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, et al. The obo foundry: coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol. 2007; 25(11):1251\u20135.","journal-title":"Nat Biotechnol"},{"key":"170_CR11","volume-title":"OTM 2013 Conferences","author":"D Faria","year":"2013","unstructured":"Faria D, Pesquita C, Santos E, Palmonari M, Cruz IF, Couto FM. The AgreementMakerLight Ontology Matching System. In: OTM 2013 Conferences. Germany: Springer, Berlin, Heidelberg;2013. p. 527\u201341."},{"key":"170_CR12","unstructured":"Faria D, Pesquita C, Balasubramani BS, Martins C, Cardoso J, Curado H, Couto FM, Cruz IF. OAEI 2016 Results of AML. In: ISWC Workshop on Ontology Matching (OM), vol. 1766: 2016. p. 138\u2013145. Online: \n                    www.CEUR-WS.org\n                    \n                  ."},{"key":"170_CR13","volume-title":"Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences","author":"E Jim\u00e9nez-Ruiz","year":"2011","unstructured":"Jim\u00e9nez-Ruiz E, Grau BC, Zhou Y. LogMap 2.0: towards logic-based, scalable and interactive ontology matching. In: Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences. New York: ACM;2011. p. 45\u20136."},{"key":"170_CR14","unstructured":"Achichi M, Cheatham M, Dragisic Z, Euzenat J, Faria D, Ferrara A, Flouris G, Fundulaki I, Harrow I, Ivanova V, et al. Results of the Ontology Alignment Evaluation Initiative 2016.2016. pp. 73\u2013129."},{"issue":"11","key":"170_CR15","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1145\/219717.219748","volume":"38","author":"GA Miller","year":"1995","unstructured":"Miller GA. WordNet: A Lexical Database for English. Commun ACM. 1995; 38(11):39\u201341.","journal-title":"Commun ACM"},{"key":"170_CR16","unstructured":"Zhao M, Zhang S. Identifying and validating ontology mappings by formal concept analysis. In: ISWC Conference on Ontology Matching (OM), vol. 1766: 2016. p. 61\u201372. Online: \n                    www.CEUR-WS.org\n                    \n                  ."},{"issue":"Database issue","key":"170_CR17","doi-asserted-by":"publisher","first-page":"267","DOI":"10.1093\/nar\/gkh061","volume":"32","author":"O Bodenreider","year":"2004","unstructured":"Bodenreider O. The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Res. 2004; 32(Database issue):267\u201370.","journal-title":"Nucleic Acids Res"},{"key":"170_CR18","volume-title":"International Semantic Web Conference (ISWC). Lecture Notes in Computer Science, vol. 8218","author":"C Pesquita","year":"2013","unstructured":"Pesquita C, Faria D, Stroe C, Santos E, Cruz IF, Couto FM. What\u2019s in a \u201cnym\u201d? Synonyms in Biomedical Ontology Matching. In: International Semantic Web Conference (ISWC). Lecture Notes in Computer Science, vol. 8218. Germany: Springer, Berlin, Heidelberg;2013. p. 526\u201341."},{"issue":"2","key":"170_CR19","first-page":"1586","volume":"2","author":"IF Cruz","year":"2009","unstructured":"Cruz IF, Palandri Antonelli F, Stroe C. AgreementMaker: Efficient Matching for Large Real-World Schemas and Ontologies. PVLDB. 2009; 2(2):1586\u20139.","journal-title":"PVLDB"},{"key":"170_CR20","unstructured":"Pesquita C, Stroe C, Cruz IF, Couto FM. BLOOMS on AgreementMaker: Results for OAEI 2010. In: ISWC Workshop on Ontology Matching, vol. 689: 2010. p. 134\u201341. Online: \n                    www.CEUR-WS.org\n                    \n                  ."},{"key":"170_CR21","unstructured":"Garc\u0131a MAR, Gkoutos GV, Schofield PN, Hoehndorf R. Integrating phenotype ontologies with PhenomeNET. In: ISWC Conference on Ontology Matching (OM), vol. 1766: 2016. p. 201\u2013209. Online: \n                    www.CEUR-WS.org\n                    \n                  ."},{"issue":"3","key":"170_CR22","doi-asserted-by":"publisher","first-page":"196","DOI":"10.1016\/j.websem.2006.05.003","volume":"4","author":"P Lambrix","year":"2006","unstructured":"Lambrix P, Tan H. Sambo\u2014a system for aligning and merging biomedical ontologies. Web Semant Sci Serv Agents World Wide Web. 2006; 4(3):196\u2013206.","journal-title":"Web Semant Sci Serv Agents World Wide Web"},{"issue":"12","key":"170_CR23","first-page":"0144807","volume":"10","author":"E Santos","year":"2015","unstructured":"Santos E, Faria D, Pesquita C, Couto FM. Ontology alignment repair through modularization and confidence-based heuristics. PLoS ONE. 2015; 10(12):0144807.","journal-title":"PLoS ONE"},{"key":"170_CR24","unstructured":"Xia W, Jimenez-Ruiz E, Cross V. Using BioPortal as a Repository for Mediating Ontologies in Ontology Alignment. In: Semantic Web Applications and Tools for Life Sciences (SWAT4LS), vol. 1546: 2015. p. 220\u2013221. Online: \n                    www.CEUR-WS.org\n                    \n                  ."},{"issue":"1","key":"170_CR25","doi-asserted-by":"crossref","first-page":"11","DOI":"10.3233\/SW-2011-0025","volume":"2","author":"M Horridge","year":"2011","unstructured":"Horridge M, Bechhofer S. The OWL API: A java API for OWL ontologies. Semantic Web. 2011; 2(1):11\u201321.","journal-title":"Semantic Web"},{"key":"170_CR26","unstructured":"Faria D, Pesquita C, Santos E, Cruz IF, Couto FM. AgreementMakerLight results for OAEI 2013. In: ISWC Workshop on Ontology Matching (OM), vol. 1111: 2013. p. 101\u20138. Online: \n                    www.CEUR-WS.org\n                    \n                  ."},{"key":"170_CR27","volume-title":"International Semantic Web Conference (ISWC). Lecture Notes in Computer Science, vol. 3729","author":"G Stoilos","year":"2005","unstructured":"Stoilos G, Stamou G, Kollias S. A String Metric for Ontology Alignment. In: International Semantic Web Conference (ISWC). Lecture Notes in Computer Science, vol. 3729. Germany: Springer, Berlin, Heidelberg;2005. p. 624\u201337."},{"key":"170_CR28","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-642-38721-0","volume-title":"Ontology Matching, 2nd edition","author":"J Euzenat","year":"2013","unstructured":"Euzenat J, Shvaiko P. Ontology Matching, 2nd edition. Heidelberg: Springer; 2013."},{"key":"170_CR29","unstructured":"Gro\u00df A, Hartung M, Kirsten T, Rahm E. GOMMA Results for OAEI 2012. In: ISWC Workshop on Ontology Matching (OM), vol. 946: 2012. p. 133\u201340. Online: \n                    www.CEUR-WS.org\n                    \n                  ."},{"issue":"5","key":"170_CR30","doi-asserted-by":"publisher","first-page":"610","DOI":"10.1016\/j.ajhg.2008.09.017","volume":"83","author":"PN Robinson","year":"2008","unstructured":"Robinson PN, K\u00f6hler S, Bauer S, Seelow D, Horn D, Mundlos S. The human phenotype ontology: a tool for annotating and analyzing human hereditary disease. Am J Hum Genet. 2008; 83(5):610\u20135.","journal-title":"Am J Hum Genet"},{"issue":"1","key":"170_CR31","doi-asserted-by":"publisher","first-page":"R2","DOI":"10.1186\/gb-2010-11-1-r2","volume":"11","author":"CJ Mungall","year":"2010","unstructured":"Mungall CJ, Gkoutos GV, Smith CL, Haendel MA, Lewis SE, Ashburner M. Integrating phenotype ontologies across multiple species. Genome Biol. 2010; 11(1):R2.","journal-title":"Genome Biol"},{"issue":"9-10","key":"170_CR32","doi-asserted-by":"publisher","first-page":"653","DOI":"10.1007\/s00335-012-9421-3","volume":"23","author":"CL Smith","year":"2012","unstructured":"Smith CL, Eppig JT. The mammalian phenotype ontology as a unifying standard for experimental and high-throughput phenotyping data. Mammalian Genome. 2012; 23(9-10):653\u201368.","journal-title":"Mammalian Genome"},{"issue":"3","key":"170_CR33","doi-asserted-by":"publisher","first-page":"R29","DOI":"10.1186\/gb-2005-6-3-r29","volume":"6","author":"TF Hayamizu","year":"2005","unstructured":"Hayamizu TF, Mangan M, Corradi JP, Kadin JA, Ringwald M. The adult mouse anatomical dictionary: a tool for annotating and integrating data. Genome Biol. 2005; 6(3):R29.","journal-title":"Genome Biol"},{"issue":"D1","key":"170_CR34","doi-asserted-by":"publisher","first-page":"940","DOI":"10.1093\/nar\/gkr972","volume":"40","author":"LM Schriml","year":"2012","unstructured":"Schriml LM, Arze C, Nadendla S, Chang Y-WW, Mazaitis M, Felix V, Feng G, Kibbe WA. Disease Ontology: a backbone for disease semantic integration. Nucleic Acids Res. 2012; 40(D1):940\u20136.","journal-title":"Nucleic Acids Res"},{"key":"170_CR35","volume-title":"Relationships in the organization of knowledge. Information Science and Knowledge Management, vol. 2","author":"SJ Nelson","year":"2001","unstructured":"Nelson SJ, Johnston WD, Humphreys BL. Relationships in medical subject headings (MeSH). In: Relationships in the organization of knowledge. Information Science and Knowledge Management, vol. 2. Germany: Springer, Dordrecht;2001. p. 171\u201384."},{"key":"170_CR36","volume-title":"ESWS 2004: The Semantic Web: Research and Applications. Lecture Notes in Computer Science, vol. 3053","author":"F Giunchiglia","year":"2004","unstructured":"Giunchiglia F, Shvaiko P, Yatskevich M. S-Match: an algorithm and an implementation of semantic matching. In: ESWS 2004: The Semantic Web: Research and Applications. Lecture Notes in Computer Science, vol. 3053. Germany: Springer, Berlin, Heidelberg: 2004. p. 61\u201375."},{"key":"170_CR37","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.datak.2014.07.001","volume":"93","author":"P Arnold","year":"2014","unstructured":"Arnold P, Rahm E. Enriching ontology mappings with semantic relations. Data Knowl Eng. 2014; 93:1\u201318.","journal-title":"Data Knowl Eng"},{"key":"170_CR38","unstructured":"Ontology Alignment Evaluation Initiative. Accessed 12 Dec 2017. \n                    http:\/\/oaei.ontologymatching.org\/\n                    \n                  ."},{"key":"170_CR39","unstructured":"AgreementMakerLight. \n                    https:\/\/github.com\/agreementmakerlight\n                    \n                  . Accessed 12 Dec 2017."},{"issue":"4","key":"170_CR40","doi-asserted-by":"publisher","first-page":"344","DOI":"10.1016\/j.websem.2009.09.001","volume":"7","author":"MH Seddiqui","year":"2009","unstructured":"Seddiqui MH, Aono M. An efficient and scalable algorithm for segmented alignment of ontologies of arbitrary size. Web Semant Sci Serv Agents World Wide Web. 2009; 7(4):344\u201356.","journal-title":"Web Semant Sci Serv Agents World Wide Web"},{"key":"170_CR41","volume-title":"Proceedings of the 15th ACM international conference on information and knowledge management (CIKM)","author":"J David","year":"2006","unstructured":"David J, Guillet F, Briand H. Matching directories and OWL ontologies with AROMA. In: Proceedings of the 15th ACM international conference on information and knowledge management (CIKM). New York: ACM;2006. p. 830\u20131."},{"issue":"3","key":"170_CR42","doi-asserted-by":"publisher","first-page":"235","DOI":"10.1016\/j.websem.2009.04.001","volume":"7","author":"YR Jean-Mary","year":"2009","unstructured":"Jean-Mary YR, Shironoshita EP, Kabuka MR. Ontology matching with semantic verification. Web Semant Sci Serv Agents World Wide Web. 2009; 7(3):235\u201351.","journal-title":"Web Semant Sci Serv Agents World Wide Web"},{"key":"170_CR43","volume-title":"Internet of Things, Smart Spaces, and Next Generation Networking. Lecture Notes in Computer Science, vol. 7469","author":"K Kotis","year":"2012","unstructured":"Kotis K, Katasonov A, Leino J. Aligning smart and control entities in the IoT. In: Internet of Things, Smart Spaces, and Next Generation Networking. Lecture Notes in Computer Science, vol. 7469. Germany: Springer, Berlin, Heidelberg;2012. p. 39\u201350."},{"key":"170_CR44","unstructured":"M\u00fcller AC, Paulheim H. Towards combining ontology matchers via anomaly detection. In: ISWC Workshop on Ontology Matching, vol. 1545: 2015. p. 40\u20134. Online: \n                    www.CEUR-WS.org\n                    \n                  ."},{"key":"170_CR45","doi-asserted-by":"publisher","first-page":"50","DOI":"10.1016\/j.websem.2016.09.001","volume":"41","author":"M Guli\u0107","year":"2016","unstructured":"Guli\u0107 M, Vrdoljak B, Banek M. Cromatcher: An ontology matching system based on automated weighted aggregation and iterative final alignment. Web Semant Sci Serv Agents World Wide Web. 2016; 41:50\u201371.","journal-title":"Web Semant Sci Serv Agents World Wide Web"},{"key":"170_CR46","volume-title":"I-MEDIA \u201807, I-SEMANTICS \u201807: International Conferences on New Media Technology and Semantic Systems; conference proceedings","author":"M Fahad","year":"2007","unstructured":"Fahad M, Qadir MA, Noshairwan MW, Iftakhir N. DKP-OM: A semantic based ontology merger. In: I-MEDIA \u201807, I-SEMANTICS \u201807: International Conferences on New Media Technology and Semantic Systems; conference proceedings. Graz: Graz : Verl. der Techn. Univ;2007. p. 313\u201322."},{"key":"170_CR47","unstructured":"Nagy M, Vargas-Vera M, Motta E. DSSim: managing uncertainty on the semantic Web. In: ISWC Conference on Ontology Matching (OM), vol. 304: 2007. p. 160\u20139. Online: \n                    www.CEUR-WS.org\n                    \n                  ."},{"key":"170_CR48","unstructured":"Li W. Combining sum-product network and noisy-or model for ontology matching. In: ISWC Conference on Ontology Matching (OM), vol. 1545: 2015. p. 35\u20139. Online: \n                    www.CEUR-WS.org\n                    \n                  ."},{"issue":"1","key":"170_CR49","doi-asserted-by":"publisher","first-page":"6","DOI":"10.1186\/2041-1480-2-6","volume":"2","author":"T Kirsten","year":"2011","unstructured":"Kirsten T, Gross A, Hartung M, Rahm E. GOMMA: a component-based infrastructure for managing and analyzing life science ontologies and their evolution. J Biomed Semantics. 2011; 2(1):6.","journal-title":"J Biomed Semantics"},{"key":"170_CR50","unstructured":"Reul Q, Pan JZ. KOSIMap: Use of description logic reasoning to align heterogeneous ontologies. In: 23rd International Workshop on Description Logics (DL2010), vol. 573: 2010. p. 489\u2013500. Online: \n                    www.CEUR-WS.org\n                    \n                  ."},{"key":"170_CR51","volume-title":"International Semantic Web Conference (ISWC). Lecture Notes in Computer Science, vol. 9981","author":"I Megdiche","year":"2016","unstructured":"Megdiche I, Teste O, Trojahn C. An extensible linear approach for holistic ontology matching. In: International Semantic Web Conference (ISWC). Lecture Notes in Computer Science, vol. 9981. Germany: Springer, Cham;2016. p. 393\u2013410."},{"key":"170_CR52","volume-title":"OTM 2015 Conferences. Lecture Notes in Computer Science, vol. 9415","author":"AN Tigrine","year":"2015","unstructured":"Tigrine AN, Bellahsene Z, Todorov K. Light-weight cross-lingual ontology matching with LYAM++. In: OTM 2015 Conferences. Lecture Notes in Computer Science, vol. 9415. Germany: Springer, Cham;2015. p. 527\u201344."},{"key":"170_CR53","doi-asserted-by":"publisher","first-page":"152","DOI":"10.1016\/j.ins.2010.08.013","volume":"192","author":"J Bock","year":"2012","unstructured":"Bock J, Hettenhausen J. Discrete particle swarm optimisation for ontology alignment. Inf Sci. 2012; 192:152\u201373.","journal-title":"Inf Sci"},{"key":"170_CR54","volume-title":"Proceedings of the International Conference on Knowledge Engineering and Ontology Development (KEOD)","author":"S Zghal","year":"2009","unstructured":"Zghal S, Kachroudi M, Yahia SB, Nguifo EM. OACAS-Ontologies Alignment using Composition and Aggregation of Similarities. In: Proceedings of the International Conference on Knowledge Engineering and Ontology Development (KEOD). Setubal: INSTICC Press;2009. p. 233\u20138."},{"issue":"1","key":"170_CR55","doi-asserted-by":"publisher","first-page":"44","DOI":"10.1186\/2041-1480-5-44","volume":"5","author":"G Diallo","year":"2014","unstructured":"Diallo G. An effective method of large scale ontology matching. J Biomed Semant. 2014; 5(1):44.","journal-title":"J Biomed Semant"},{"key":"170_CR56","volume-title":"EKAW 2010: Knowledge Engineering and Management by the Masses. Lecture Notes in Computer Science, vol. 6317","author":"F Hamdi","year":"2010","unstructured":"Hamdi F, Reynaud C, Safar B. Pattern-based mapping refinement. In: EKAW 2010: Knowledge Engineering and Management by the Masses. Lecture Notes in Computer Science, vol. 6317. Germany: Springer, Berlin, Heidelberg;2010. p. 1\u201315."},{"key":"170_CR57","volume-title":"Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications, vol. 243","author":"A Szwabe","year":"2012","unstructured":"Szwabe A, Misiorek P, Walkowiak P. Tensor-based Relational Learning for Ontology Matching. In: Advances in Knowledge-Based and Intelligent Information and Engineering Systems. Frontiers in Artificial Intelligence and Applications, vol. 243. Amsterdam: IOS Press;2012. p. 509\u201318."},{"key":"170_CR58","unstructured":"Hertling S, Paulheim H. WikiMatch: using wikipedia for ontology matching. In: ISWC Workshop on Ontology Matching (OM), vol. 946: 2012. p. 37\u201348. Online: \n                    www.CEUR-WS.org\n                    \n                  ."},{"issue":"Supplement C","key":"170_CR59","doi-asserted-by":"publisher","first-page":"30","DOI":"10.1016\/j.websem.2016.09.002","volume":"41","author":"D Ngo","year":"2016","unstructured":"Ngo D, Bellahsene Z. Overview of YAM++\u2014(not) Yet Another Matcher for ontology alignment task. Web Semant Sci Serv Agents World Wide Web. 2016; 41(Supplement C):30\u201349.","journal-title":"Web Semant Sci Serv Agents World Wide Web"}],"container-title":["Journal of Biomedical Semantics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s13326-017-0170-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s13326-017-0170-9\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s13326-017-0170-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,15]],"date-time":"2020-05-15T13:40:00Z","timestamp":1589550000000},"score":1,"resource":{"primary":{"URL":"https:\/\/jbiomedsem.biomedcentral.com\/articles\/10.1186\/s13326-017-0170-9"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,1,15]]},"references-count":59,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2018,12]]}},"alternative-id":["170"],"URL":"https:\/\/doi.org\/10.1186\/s13326-017-0170-9","relation":{},"ISSN":["2041-1480"],"issn-type":[{"value":"2041-1480","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,1,15]]},"assertion":[{"value":"13 April 2017","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"15 December 2017","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"15 January 2018","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"Not applicable","order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"The authors accept the conditions of submission and the BioMed Central Copyright and License Agreement, and give their consent for BioMed Central to publish this manuscript.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare that they have no competing interests.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}},{"value":"Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Publisher\u2019s Note"}}],"article-number":"4"}}