{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,21]],"date-time":"2025-02-21T13:17:03Z","timestamp":1740143823512,"version":"3.37.3"},"reference-count":24,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2016,2,5]],"date-time":"2016-02-05T00:00:00Z","timestamp":1454630400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2016,2,5]],"date-time":"2016-02-05T00:00:00Z","timestamp":1454630400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["1447235"],"award-info":[{"award-number":["1447235"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["1244068"],"award-info":[{"award-number":["1244068"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000062","name":"National Institute of Diabetes and Digestive and Kidney Diseases","doi-asserted-by":"publisher","award":["R21DK092845"],"award-info":[{"award-number":["R21DK092845"]}],"id":[{"id":"10.13039\/100000062","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["J Bioinform Sys Biology"],"published-print":{"date-parts":[[2016,12]]},"DOI":"10.1186\/s13637-016-0038-9","type":"journal-article","created":{"date-parts":[[2016,2,5]],"date-time":"2016-02-05T05:18:42Z","timestamp":1454649522000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":4,"title":["Bayesian module identification from multiple noisy networks"],"prefix":"10.1186","volume":"2016","author":[{"given":"Siamak","family":"Zamani Dadaneh","sequence":"first","affiliation":[]},{"given":"Xiaoning","family":"Qian","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2016,2,5]]},"reference":[{"issue":"2","key":"38_CR1","doi-asserted-by":"publisher","first-page":"026113","DOI":"10.1103\/PhysRevE.69.026113","volume":"69","author":"ME Newman","year":"2004","unstructured":"ME Newman, M Girvan, Finding and evaluating community structure in networks. Phys. Rev. E. 69(2), 026113 (2004).","journal-title":"Phys. Rev. E"},{"key":"38_CR2","doi-asserted-by":"publisher","first-page":"888","DOI":"10.1109\/34.868688","volume":"22","author":"J Shi","year":"2000","unstructured":"J Shi, J Malik, Normalized cuts and image segmentation. IEEE Trans. Pattern Anal. Mach. Intell. 22:, 888\u2013905 (2000).","journal-title":"IEEE Trans. Pattern Anal. Mach. Intell"},{"key":"38_CR3","first-page":"569","volume":"30","author":"Y Wang","year":"2013","unstructured":"Y Wang, X Qian, Functional module identification in protein interaction networks by interaction patterns. Bioinformatics. 30:, 569 (2013).","journal-title":"Bioinformatics"},{"key":"38_CR4","first-page":"76","volume":"5","author":"S White","year":"2005","unstructured":"S White, P Smyth, A spectral clustering approach to finding communities in graph. SDM. 5:, 76\u201384 (2005).","journal-title":"SDM"},{"issue":"1","key":"38_CR5","doi-asserted-by":"publisher","first-page":"9","DOI":"10.1186\/1752-0509-8-S1-S9","volume":"8","author":"Y Wang","year":"2014","unstructured":"Y Wang, X Qian, Joint clustering of protein interaction networks through Markov random walk. BMC Syst. Biol. 8(1), 9 (2014).","journal-title":"BMC Syst. Biol"},{"key":"38_CR6","unstructured":"K Yu, S Yu, V Tresp, in Advances in Neural Information Processing Systems. Soft clustering on graphs, (2005), p. 05."},{"key":"38_CR7","doi-asserted-by":"crossref","first-page":"688","DOI":"10.1145\/2649387.2660833","volume-title":"Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics","author":"Y Wang","year":"2014","unstructured":"Y Wang, X Qian, in Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Biological network clustering by robust NMF (ACMNew York, NY, USA, 2014), pp. 688\u2013689."},{"key":"38_CR8","doi-asserted-by":"publisher","first-page":"1","DOI":"10.2307\/270703","volume":"7","author":"PW Holland","year":"1976","unstructured":"PW Holland, S Leinhardt, Local structure in social networks. Sociol. Method. 7:, 1\u201345 (1976).","journal-title":"Sociol. Method"},{"key":"38_CR9","doi-asserted-by":"publisher","first-page":"258701","DOI":"10.1103\/PhysRevLett.100.258701","volume":"100","author":"JK Hofman","year":"2008","unstructured":"JK Hofman, CH Wiggins, Bayesian approach to network modularity. Phys. Rev. Lett. 100:, 258701 (2008).","journal-title":"Phys. Rev. Lett"},{"issue":"2","key":"38_CR10","doi-asserted-by":"publisher","first-page":"159","DOI":"10.1007\/s11280-004-4872-4","volume":"8","author":"R Kumar","year":"2005","unstructured":"R Kumar, J Novak, P Raghavan, A Tomkins, On the bursty evolution of Blogspace. World Wide Web.8(2), 159\u2013178 (2005).","journal-title":"World Wide Web."},{"key":"38_CR11","doi-asserted-by":"publisher","first-page":"153","DOI":"10.1145\/1281192.1281212","volume-title":"Proceedings of the 13th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining","author":"Y Chi","year":"2007","unstructured":"Y Chi, X Song, D Zhou, K Hino, BL Tseng, in Proceedings of the 13th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. Evolutionary spectral clustering by incorporating temporal smoothness (ACMNew York, NY, USA, 2007), pp. 153\u2013162."},{"key":"38_CR12","doi-asserted-by":"publisher","first-page":"685","DOI":"10.1145\/1367497.1367590","volume-title":"Proceedings of the 17th International Conference on World Wide Web","author":"Y-R Lin","year":"2008","unstructured":"Y-R Lin, Y Chi, S Zhu, H Sundaram, BL Tseng, in Proceedings of the 17th International Conference on World Wide Web. FacetNet: a framework for analyzing communities and their evolutions in dynamic networks (ACMNew York, NY, USA, 2008), pp. 685\u2013694."},{"issue":"2","key":"38_CR13","doi-asserted-by":"publisher","first-page":"157","DOI":"10.1007\/s10994-010-5214-7","volume":"82","author":"T Yang","year":"2011","unstructured":"T Yang, Y Chi, S Zhu, Y Gong, R Jin, Detecting communities and their evolutions in dynamic social networks\u2014a Bayesian approach. Mach. Learn. 82(2), 157\u2013189 (2011).","journal-title":"Mach. Learn"},{"issue":"1","key":"38_CR14","doi-asserted-by":"publisher","first-page":"449","DOI":"10.1093\/nar\/gkh086","volume":"32","author":"L Salwinski","year":"2004","unstructured":"L Salwinski, CS Miller, AJ Smith, FK Pettit, JU Bowie, D Eisenberg, The database of interacting proteins: 2004 update. Nucleic Acids Res. 32(1), 449\u2013451 (2004).","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"38_CR15","first-page":"637","volume":"36","author":"B-J Breitkreutz","year":"2008","unstructured":"B-J Breitkreutz, C Stark, T Reguly, L Boucher, A Breitkreutz, M Livstone, R Oughtred, DH Lackner, J B\u00e4hler, V Wood, et al, The BioGRID interaction database: 2008 update. Nucleic Acids Res. 36(1), 637\u2013640 (2008).","journal-title":"Nucleic Acids Res"},{"issue":"6","key":"38_CR16","doi-asserted-by":"publisher","first-page":"721","DOI":"10.1109\/TPAMI.1984.4767596","volume":"PAMI-6","author":"S Geman","year":"1984","unstructured":"S Geman, D Geman, Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images. IEEE Trans. Pattern Anal. Mach. Intell. PAMI-6(6), 721\u2013741 (1984).","journal-title":"IEEE Trans. Pattern Anal. Mach. Intell"},{"issue":"4","key":"38_CR17","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1080\/00031305.1995.10476177","volume":"49","author":"S Chib","year":"1995","unstructured":"S Chib, E Greenberg, Understanding the Metropolis-Hastings algorithm. The American Statistician. 49(4), 327\u2013335 (1995).","journal-title":"The American Statistician"},{"key":"38_CR18","volume-title":"Pattern recognition and machine learning","author":"CM Bishop","year":"2006","unstructured":"CM Bishop, et al, Pattern recognition and machine learning (Springer, New York, 2006)."},{"issue":"5","key":"38_CR19","doi-asserted-by":"publisher","first-page":"471","DOI":"10.1038\/nmeth.1938","volume":"9","author":"T Nepusz","year":"2012","unstructured":"T Nepusz, H Yu, A Paccanaro, Detecting overlapping protein complexes in protein-protein interaction networks. Nat. Methods. 9(5), 471\u2013472 (2012).","journal-title":"Nat. Methods"},{"issue":"1","key":"38_CR20","first-page":"577","volume":"36","author":"EL Hong","year":"2008","unstructured":"EL Hong, R Balakrishnan, Q Dong, KR Christie, J Park, G Binkley, MC Costanzo, SS Dwight, SR Engel, DG Fisk, et al, Gene Ontology annotations at SGD: new data sources and annotation methods. Nucleic Acids Res. 36(1), 577\u2013581 (2008).","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"38_CR21","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1093\/nar\/gkh092","volume":"32","author":"H-W Mewes","year":"2004","unstructured":"H-W Mewes, C Amid, R Arnold, D Frishman, U G\u00fcldener, G Mannhaupt, M M\u00fcnsterk\u00f6tter, P Pagel, N Strack, V St\u00fcmpflen, et al, MIPS: analysis and annotation of proteins from whole genomes. Nucleic Acids Res. 32(1), 41\u201344 (2004).","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"38_CR22","doi-asserted-by":"publisher","first-page":"488","DOI":"10.1186\/1471-2105-7-488","volume":"7","author":"S Brohee","year":"2006","unstructured":"S Brohee, J Van Helden, Evaluation of clustering algorithms for protein-protein interaction networks. BMC Bioinformatics. 7(1), 488 (2006).","journal-title":"BMC Bioinformatics"},{"issue":"5569","key":"38_CR23","doi-asserted-by":"publisher","first-page":"910","DOI":"10.1126\/science.1065103","volume":"296","author":"S Maslov","year":"2002","unstructured":"S Maslov, K Sneppen, Specificity and stability in topology of protein networks. Science. 296(5569), 910\u2013913 (2002).","journal-title":"Science"},{"issue":"11","key":"38_CR24","doi-asserted-by":"publisher","first-page":"2498","DOI":"10.1101\/gr.1239303","volume":"13","author":"P Shannon","year":"2003","unstructured":"P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, B Schwikowski, T Ideker, Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13(11), 2498\u20132504 (2003).","journal-title":"Genome Res"}],"container-title":["EURASIP Journal on Bioinformatics and Systems Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s13637-016-0038-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s13637-016-0038-9\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s13637-016-0038-9","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s13637-016-0038-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,6,14]],"date-time":"2024-06-14T05:31:09Z","timestamp":1718343069000},"score":1,"resource":{"primary":{"URL":"https:\/\/bsb-eurasipjournals.springeropen.com\/articles\/10.1186\/s13637-016-0038-9"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,2,5]]},"references-count":24,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2016,12]]}},"alternative-id":["38"],"URL":"https:\/\/doi.org\/10.1186\/s13637-016-0038-9","relation":{},"ISSN":["1687-4153"],"issn-type":[{"type":"electronic","value":"1687-4153"}],"subject":[],"published":{"date-parts":[[2016,2,5]]},"assertion":[{"value":"26 May 2015","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"20 January 2016","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"5 February 2016","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"5"}}