{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,22]],"date-time":"2025-02-22T00:32:59Z","timestamp":1740184379361,"version":"3.37.3"},"reference-count":17,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2021,8,16]],"date-time":"2021-08-16T00:00:00Z","timestamp":1629072000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2021,8,16]],"date-time":"2021-08-16T00:00:00Z","timestamp":1629072000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"funder":[{"DOI":"10.13039\/501100001411","name":"Indian Council of Medical Research","doi-asserted-by":"crossref","award":["OMI\/27\/2020-ECD-1"],"award-info":[{"award-number":["OMI\/27\/2020-ECD-1"]}],"id":[{"id":"10.13039\/501100001411","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Genom Data"],"published-print":{"date-parts":[[2021,12]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:sec>\n                <jats:title>Objective<\/jats:title>\n                <jats:p><jats:italic>M. morganii<\/jats:italic> is a gram-negative, non-lactose fermenting and an opportunistic pathogen frequently associated with nosocomial infections. Although first isolated in 1906 from a pediatric fecal sample, not many <jats:italic>M. morganii<\/jats:italic> isolates have been sequenced. The objective of this work is to determine the complete genome sequence of an XDR <jats:italic>M. morganii<\/jats:italic> strain (SMM01) isolated from the urine of a patient with urinary and fecal incontinence and to characterize its antimicrobial resistance profile.<\/jats:p>\n              <\/jats:sec><jats:sec>\n                <jats:title>Data description<\/jats:title>\n                <jats:p>Here, we report the complete genome sequence of <jats:italic>M. morganii<\/jats:italic> SMM01 generated from the hybrid assembly of Illumina HiSeq X and Nanopore MinION reads. The assembly is 100% complete with genome size of 39,30,130\u2009bp and GC content of 51%. Genomic features include 3617 CDS, 18 rRNAs, 78 tRNAs, 4 ncRNAs and 60 pseudogenes. Antimicrobial resistance profile was characterized by the presence of genes conferring resistance to aminoglycosides, \u03b2-lactams, fluoroquinolones, chloramphenicol, and tetracyclines. Secondary metabolite biosynthetic gene clusters like NRPS, T1PKS, thiopeptide, beta-lactone, and bacteriocin were identified. The genome data described here would be the first complete genome of an Indian <jats:italic>M. morganii<\/jats:italic> isolate providing crucial information on antimicrobial resistance patterns, paving the way for further comparative genome analyses.<\/jats:p>\n              <\/jats:sec>","DOI":"10.1186\/s12863-021-00982-3","type":"journal-article","created":{"date-parts":[[2021,8,16]],"date-time":"2021-08-16T10:03:01Z","timestamp":1629108181000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Complete genome sequence of an extensively drug resistant (XDR) M. morganii SMM01 isolated from a patient with urinary and fecal incontinence"],"prefix":"10.1186","volume":"22","author":[{"given":"Pachi Pulusu","family":"Chanakya","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Balaram","family":"Khamari","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Manmath","family":"Lama","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Arun Sai Kumar","family":"Peketi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Prakash","family":"Kumar","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Valakunja","family":"Nagaraja","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8022-8168","authenticated-orcid":false,"given":"Eswarappa Pradeep","family":"Bulagonda","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2021,8,16]]},"reference":[{"issue":"2427","key":"982_CR1","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1136\/bmj.2.2427.16-a","volume":"2","author":"HDR Morgan","year":"1907","unstructured":"Morgan HDR, Oxon MA. Report CII. Upon the bacteriology of the summer Diarrhoea of infants. Br Med J. 1907;2(2427):16\u20139. https:\/\/doi.org\/10.1136\/bmj.2.2427.16-a.","journal-title":"Br Med J"},{"issue":"4","key":"982_CR2","doi-asserted-by":"publisher","first-page":"534","DOI":"10.1128\/CMR.13.4.534","volume":"13","author":"CM O'Hara","year":"2000","unstructured":"O'Hara CM, Brenner FW, Miller JM. Classification, identification, and clinical significance of Proteus, Providencia, and Morganella. Clin Microbiol Rev. 2000;13(4):534\u201346. https:\/\/doi.org\/10.1128\/CMR.13.4.534.","journal-title":"Clin Microbiol Rev"},{"issue":"2","key":"982_CR3","doi-asserted-by":"publisher","first-page":"231","DOI":"10.1007\/s10096-014-2222-8","volume":"34","author":"TY Lin","year":"2015","unstructured":"Lin TY, Chan MC, Yang YS, Lee Y, Yeh KM, Lin JC, et al. Clinical manifestations and prognostic factors of Morganella morganii bacteremia. Eur J Clin Microbiol Infect Dis. 2015;34(2):231\u20136. https:\/\/doi.org\/10.1007\/s10096-014-2222-8.","journal-title":"Eur J Clin Microbiol Infect Dis"},{"key":"982_CR4","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1016\/j.ijid.2016.07.006","volume":"50","author":"H Liu","year":"2016","unstructured":"Liu H, Zhu J, Hu Q, Rao X. Morganella morganii, a non-negligent opportunistic pathogen. Int J Infect Dis. 2016;50:10\u20137. https:\/\/doi.org\/10.1016\/j.ijid.2016.07.006.","journal-title":"Int J Infect Dis"},{"key":"982_CR5","volume-title":"Performance Standards for Antimicrobial Susceptibility Testing. CLSI Supplement M100","author":"CLSI","year":"2020","unstructured":"CLSI. Performance Standards for Antimicrobial Susceptibility Testing. CLSI Supplement M100. 30th ed. 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Basic quality statistics of MinION sequencing data; 2021."},{"key":"982_CR8","volume-title":"A Quality Control tool for High Throughput Sequence Data","author":"S Andrews","year":"2010","unstructured":"Andrews, S: FastQC: A Quality Control tool for High Throughput Sequence Data. 2010: Available online at http:\/\/www.bioinformatics.babraham.ac.uk\/projects\/fastqc."},{"issue":"19","key":"982_CR9","doi-asserted-by":"publisher","first-page":"3047","DOI":"10.1093\/bioinformatics\/btw354","volume":"32","author":"P Ewels","year":"2016","unstructured":"Ewels P, Magnusson M, Lundin S, K\u00e4ller M. MultiQC: summarize analysis results for multiple tools and samples in a single report. Bioinformatics. 2016;32(19):3047\u20138. https:\/\/doi.org\/10.1093\/bioinformatics\/btw354.","journal-title":"Bioinformatics"},{"key":"982_CR10","volume-title":"Quality distribution of Illumina sequencing data","author":"PP Chanakya","year":"2021","unstructured":"Chanakya PP. 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Short BUSCO summary of Morganella morganii SMM01; 2021."}],"container-title":["BMC Genomic Data"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12863-021-00982-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1186\/s12863-021-00982-3\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12863-021-00982-3.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,8,16]],"date-time":"2021-08-16T10:04:30Z","timestamp":1629108270000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcgenet.biomedcentral.com\/articles\/10.1186\/s12863-021-00982-3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,8,16]]},"references-count":17,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2021,12]]}},"alternative-id":["982"],"URL":"https:\/\/doi.org\/10.1186\/s12863-021-00982-3","relation":{},"ISSN":["2730-6844"],"issn-type":[{"type":"electronic","value":"2730-6844"}],"subject":[],"published":{"date-parts":[[2021,8,16]]},"assertion":[{"value":"17 February 2021","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"1 July 2021","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"16 August 2021","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"Not applicable.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare no competing interests.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"27"}}