{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,11,3]],"date-time":"2026-11-03T23:14:54Z","timestamp":1793747694571,"version":"4.6.1"},"reference-count":58,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2019,2,18]],"date-time":"2019-02-18T00:00:00Z","timestamp":1550448000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"the Key Fundamental Research Program of Hebei Province","award":["15962904D"],"award-info":[{"award-number":["15962904D"]}]},{"name":"the National Water Pollution Control and Treatment Science and Technology Major Project of China","award":["2015ZX07204-007"],"award-info":[{"award-number":["2015ZX07204-007"]}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"crossref","award":["31401212"],"award-info":[{"award-number":["31401212"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Genomics"],"published-print":{"date-parts":[[2019,12]]},"DOI":"10.1186\/s12864-019-5513-8","type":"journal-article","created":{"date-parts":[[2019,2,18]],"date-time":"2019-02-18T08:02:56Z","timestamp":1550476976000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":187,"title":["Involvement of jasmonic acid, ethylene and salicylic acid signaling pathways behind the systemic resistance induced by Trichoderma longibrachiatum H9 in cucumber"],"prefix":"10.1186","volume":"20","author":[{"given":"Min","family":"Yuan","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuanyuan","family":"Huang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Weina","family":"Ge","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhenhua","family":"Jia","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shuishan","family":"Song","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lan","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yali","family":"Huang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2019,2,18]]},"reference":[{"key":"5513_CR1","doi-asserted-by":"crossref","unstructured":"Dean R, Van Kan JA, Pretorius ZA, Hammond-Kosack KE, Di Pietro A, Spanu PD, Rudd JJ, Dickman M, Kahmann R, Ellis J, Foster GD. The top 10 fungal pathogens in molecular plant pathology. Mol Plant Pathol 2012; 13(4):414\u2013430.","DOI":"10.1111\/j.1364-3703.2011.00783.x"},{"issue":"3","key":"5513_CR2","doi-asserted-by":"publisher","first-page":"192","DOI":"10.5941\/MYCO.2017.45.3.192","volume":"45","author":"HG Yun","year":"2017","unstructured":"Yun HG, Kim DJ, Gwak WS, Shin TY, Woo SD. Entomopathogenic Fungi as dual control agents against both the Pest Myzus persicae and Phytopathogen Botrytis cinerea. Mycobiology. 2017;45(3):192\u20138.","journal-title":"Mycobiology"},{"issue":"1","key":"5513_CR3","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1038\/nrmicro797","volume":"2","author":"GE Harman","year":"2004","unstructured":"Harman GE, Howell CR, Viterbo A, Chet I, Lorito M. Trichoderma species--opportunistic, avirulent plant symbionts. Nat Rev Microbiol. 2004;2(1):43\u201356.","journal-title":"Nat Rev Microbiol"},{"key":"5513_CR4","doi-asserted-by":"publisher","first-page":"211","DOI":"10.1007\/978-1-4939-6367-6_16","volume":"1477","author":"TR Glare","year":"2016","unstructured":"Glare TR, Gwynn RL, Moran-Diez ME. Development of biopesticides and future opportunities. Methods Mol Biol. 2016;1477:211\u201321.","journal-title":"Methods Mol Biol"},{"issue":"10","key":"5513_CR5","doi-asserted-by":"publisher","first-page":"749","DOI":"10.1038\/nrmicro2637","volume":"9","author":"IS Druzhinina","year":"2011","unstructured":"Druzhinina IS, Seidl-Seiboth V, Herrera-Estrella A, Horwitz BA, Kenerley CM, Monte E, Mukherjee PK, Zeilinger S, Grigoriev IV, Kubicek CP. Trichoderma: the genomics of opportunistic success. Nat Rev Microbiol. 2011;9(10):749\u201359.","journal-title":"Nat Rev Microbiol."},{"key":"5513_CR6","doi-asserted-by":"crossref","unstructured":"Mukherjee PK, Horwitz BA, Kenerley CM. Secondary metabolism in Trichoderma--a genomic perspective. Microbiology 2012; 158(Pt 1):35\u201345.","DOI":"10.1099\/mic.0.053629-0"},{"issue":"4","key":"5513_CR7","doi-asserted-by":"publisher","first-page":"400","DOI":"10.1111\/mpp.12189","volume":"16","author":"CM Vos","year":"2015","unstructured":"Vos CM, De Cremer K, Cammue BP, De Coninck B. The toolbox of Trichoderma spp. in the biocontrol of Botrytis cinerea disease. Mol Plant Pathol. 2015;16(4):400\u201312.","journal-title":"Mol Plant Pathol"},{"key":"5513_CR8","doi-asserted-by":"publisher","first-page":"108","DOI":"10.3389\/fpls.2012.00108","volume":"3","author":"J Mathys","year":"2012","unstructured":"Mathys J, De Cremer K, Timmermans P, Van Kerckhove S, Lievens B, Vanhaecke M, Cammue BP, De Coninck B. Genome-wide characterization of ISR induced in Arabidopsis thaliana by Trichoderma hamatum T382 against Botrytis cinerea infection. Front Plant Sci. 2012;3:108.","journal-title":"Front Plant Sci"},{"issue":"2","key":"5513_CR9","doi-asserted-by":"publisher","first-page":"150","DOI":"10.1094\/PHYTO-02-13-0043-R","volume":"104","author":"YM Harel","year":"2014","unstructured":"Harel YM, Mehari ZH, Rav-David D, Elad Y. Systemic resistance to gray mold induced in tomato by benzothiadiazole and Trichoderma harzianum T39. Phytopathology. 2014;104(2):150\u20137.","journal-title":"Phytopathology"},{"issue":"1","key":"5513_CR10","doi-asserted-by":"publisher","first-page":"76","DOI":"10.1094\/PHYTO-95-0076","volume":"95","author":"M Shoresh","year":"2005","unstructured":"Shoresh M, Yedidia I, Chet I. Involvement of Jasmonic acid\/ethylene signaling pathway in the systemic resistance induced in cucumber by Trichoderma asperellum T203. Phytopathology. 2005;95(1):76\u201384.","journal-title":"Phytopathology"},{"issue":"1","key":"5513_CR11","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0168850","volume":"12","author":"JT Alkooranee","year":"2017","unstructured":"Alkooranee JT, Aledan TR, Ali AK, Lu G, Zhang X, Wu J, Fu C, Li M. Detecting the hormonal pathways in oilseed rape behind induced systemic resistance by Trichoderma harzianum TH12 to Sclerotinia sclerotiorum. PLoS One. 2017;12(1):e0168850.","journal-title":"PLoS One"},{"issue":"2","key":"5513_CR12","doi-asserted-by":"publisher","first-page":"309","DOI":"10.1007\/s10658-008-9421-z","volume":"124","author":"M Brand","year":"2009","unstructured":"Brand M, Messika Y, Elad Y, David DR, Sztejnberg A. Spray treatments combined with climate modification for the management of Leveillula taurica in sweet pepper. Eur J Plant Pathol. 2009;124(2):309\u201329.","journal-title":"Eur J Plant Pathol"},{"issue":"3","key":"5513_CR13","doi-asserted-by":"publisher","first-page":"1169","DOI":"10.1104\/pp.106.082107","volume":"142","author":"M Shoresh","year":"2006","unstructured":"Shoresh M, Gal-On A, Leibman D, Chet I. Characterization of a mitogen-activated protein kinase gene from cucumber required for trichoderma-conferred plant resistance. Plant Physiol. 2006;142(3):1169\u201379.","journal-title":"Plant Physiol"},{"key":"5513_CR14","doi-asserted-by":"publisher","first-page":"621","DOI":"10.1146\/annurev-arplant-042809-112252","volume":"61","author":"MC Rodriguez","year":"2010","unstructured":"Rodriguez MC, Petersen M, Mundy J. Mitogen-activated protein kinase signaling in plants. Annu Rev Plant Biol. 2010;61:621\u201349.","journal-title":"Annu Rev Plant Biol"},{"key":"5513_CR15","doi-asserted-by":"publisher","first-page":"21","DOI":"10.1146\/annurev-phyto-073009-114450","volume":"48","author":"M Shoresh","year":"2010","unstructured":"Shoresh M, Harman GE, Mastouri F. Induced systemic resistance and plant responses to fungal biocontrol agents. Annu Rev Phytopathol. 2010;48:21\u201343.","journal-title":"Annu Rev Phytopathol"},{"issue":"6","key":"5513_CR16","doi-asserted-by":"publisher","first-page":"614","DOI":"10.1016\/j.jplph.2011.12.016","volume":"169","author":"E Moran-Diez","year":"2012","unstructured":"Moran-Diez E, Rubio B, Dominguez S, Hermosa R, Monte E, Nicolas C. Transcriptomic response of Arabidopsis thaliana after 24 h incubation with the biocontrol fungus Trichoderma harzianum. J Plant Physiol. 2012;169(6):614\u201320.","journal-title":"J Plant Physiol"},{"issue":"13\u201314","key":"5513_CR17","doi-asserted-by":"crossref","first-page":"1581","DOI":"10.1016\/j.phytochem.2009.06.009","volume":"70","author":"S Ent Van der","year":"2009","unstructured":"Van der Ent S, Van Wees SC, Pieterse CM. Jasmonate signaling in plant interactions with resistance-inducing beneficial microbes. Phytochemistry. 2009;70(13\u201314):1581\u20138.","journal-title":"Phytochemistry"},{"key":"5513_CR18","doi-asserted-by":"publisher","first-page":"206","DOI":"10.3389\/fpls.2013.00206","volume":"4","author":"A Martinez-Medina","year":"2013","unstructured":"Martinez-Medina A, Fernandez I, Sanchez-Guzman MJ, Jung SC, Pascual JA, Pozo MJ. Deciphering the hormonal signalling network behind the systemic resistance induced by Trichoderma harzianum in tomato. Front Plant Sci. 2013;4:206.","journal-title":"Front Plant Sci"},{"issue":"3","key":"5513_CR19","doi-asserted-by":"publisher","first-page":"1363","DOI":"10.1111\/nph.14251","volume":"213","author":"A Martinez-Medina","year":"2017","unstructured":"Martinez-Medina A, Fernandez I, Lok GB, Pozo MJ, Pieterse CM, Van Wees SC. Shifting from priming of salicylic acid- to jasmonic acid-regulated defences by Trichoderma protects tomato against the root knot nematode Meloidogyne incognita. New Phytol. 2017;213(3):1363\u201377.","journal-title":"New Phytol"},{"issue":"1","key":"5513_CR20","doi-asserted-by":"publisher","first-page":"90","DOI":"10.1111\/j.1438-8677.2008.00162.x","volume":"11","author":"G Segarra","year":"2009","unstructured":"Segarra G, Van der Ent S, Trillas I, Pieterse CM. MYB72, a node of convergence in induced systemic resistance triggered by a fungal and a bacterial beneficial microbe. Plant Biol (Stuttg). 2009;11(1):90\u20136.","journal-title":"Plant Biol (Stuttg)"},{"key":"5513_CR21","doi-asserted-by":"publisher","first-page":"685","DOI":"10.3389\/fpls.2015.00685","volume":"6","author":"S Mayo","year":"2015","unstructured":"Mayo S, Gutierrez S, Malmierca MG, Lorenzana A, Campelo MP, Hermosa R, Casquero PA. Influence of Rhizoctonia solani and Trichoderma spp. in growth of bean (Phaseolus vulgaris L.) and in the induction of plant defense-related genes. Front Plant Sci. 2015;6:685.","journal-title":"Front Plant Sci"},{"key":"5513_CR22","doi-asserted-by":"publisher","first-page":"667","DOI":"10.1007\/s10526-007-9103-3","volume":"53","author":"N Korolev","year":"2008","unstructured":"Korolev N, Rav David D, Elad Y. The role of phytohormones in basal resistance and Trichoderma-induced systemic resistance to Botrytis cinerea in Arabidopsis thaliana. BioControl. 2008;53:667\u201383.","journal-title":"BioControl"},{"issue":"4","key":"5513_CR23","doi-asserted-by":"publisher","first-page":"621","DOI":"10.1007\/s00299-017-2109-0","volume":"36","author":"P Leonetti","year":"2017","unstructured":"Leonetti P, Zonno MC, Molinari S, Altomare C. Induction of SA-signaling pathway and ethylene biosynthesis in Trichoderma harzianum-treated tomato plants after infection of the root-knot nematode Meloidogyne incognita. Plant Cell Rep. 2017;36(4):621\u201331.","journal-title":"Plant Cell Rep"},{"key":"5513_CR24","first-page":"215","volume":"4","author":"LA Mur","year":"2013","unstructured":"Mur LA, Prats E, Pierre S, Hall MA, Hebelstrup KH. Integrating nitric oxide into salicylic acid and jasmonic acid\/ ethylene plant defense pathways. Front Plant Sci. 2013;4:215.","journal-title":"Front Plant Sci"},{"key":"5513_CR25","doi-asserted-by":"publisher","first-page":"136","DOI":"10.1186\/1471-2229-10-136","volume":"10","author":"M Shoresh","year":"2010","unstructured":"Shoresh M, Harman GE. Differential expression of maize chitinases in the presence or absence of Trichoderma harzianum strain T22 and indications of a novel exo- endo-heterodimeric chitinase activity. BMC Plant Biol. 2010;10:136.","journal-title":"BMC Plant Biol"},{"issue":"3","key":"5513_CR26","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1003221","volume":"9","author":"Y Brotman","year":"2013","unstructured":"Brotman Y, Landau U, Cuadros-Inostroza A, Tohge T, Fernie AR, Chet I, Viterbo A, Willmitzer L. Trichoderma-plant root colonization: escaping early plant defense responses and activation of the antioxidant machinery for saline stress tolerance. PLoS Pathog. 2013;9(3):e1003221.","journal-title":"PLoS Pathog"},{"issue":"8","key":"5513_CR27","doi-asserted-by":"publisher","first-page":"987","DOI":"10.1094\/MPMI-22-8-0987","volume":"22","author":"N Temme","year":"2009","unstructured":"Temme N, Tudzynski P. Does botrytis cinerea ignore H(2)O(2)-induced oxidative stress during infection? Characterization of botrytis activator protein 1. Mol Plant-Microbe Interact. 2009;22(8):987\u201398.","journal-title":"Mol Plant-Microbe Interact"},{"issue":"4","key":"5513_CR28","doi-asserted-by":"publisher","first-page":"555","DOI":"10.1111\/j.1365-313X.2008.03540.x","volume":"55","author":"C Chassot","year":"2008","unstructured":"Chassot C, Buchala A, Schoonbeek HJ, Metraux JP, Lamotte O. Wounding of Arabidopsis leaves causes a powerful but transient protection against Botrytis infection. Plant J. 2008;55(4):555\u201367.","journal-title":"Plant J"},{"issue":"12","key":"5513_CR29","doi-asserted-by":"publisher","first-page":"1459","DOI":"10.1094\/MPMI-02-11-0045","volume":"24","author":"R Velazquez-Robledo","year":"2011","unstructured":"Velazquez-Robledo R, Contreras-Cornejo HA, Macias-Rodriguez L, Hernandez-Morales A, Aguirre J, Casas-Flores S, Lopez-Bucio J, Herrera-Estrella A. Role of the 4-phosphopantetheinyl transferase of Trichoderma virens in secondary metabolism and induction of plant defense responses. Mol Plant-Microbe Interact. 2011;24(12):1459\u201371.","journal-title":"Mol Plant-Microbe Interact"},{"issue":"10","key":"5513_CR30","doi-asserted-by":"publisher","first-page":"1554","DOI":"10.4161\/psb.6.10.17443","volume":"6","author":"HA Contreras-Cornejo","year":"2011","unstructured":"Contreras-Cornejo HA, Macias-Rodriguez L, Beltran-Pena E, Herrera-Estrella A, Lopez-Bucio J. Trichoderma-induced plant immunity likely involves both hormonal- and camalexin-dependent mechanisms in Arabidopsis thaliana and confers resistance against necrotrophic fungi Botrytis cinerea. Plant Signal Behav. 2011;6(10):1554\u201363.","journal-title":"Plant Signal Behav"},{"issue":"12","key":"5513_CR31","doi-asserted-by":"publisher","first-page":"7343","DOI":"10.1128\/AEM.69.12.7343-7353.2003","volume":"69","author":"I Yedidia","year":"2003","unstructured":"Yedidia I, Shoresh M, Kerem Z, Benhamou N, Kapulnik Y, Chet I. Concomitant induction of systemic resistance to Pseudomonas syringae pv. Lachrymans in cucumber by Trichoderma asperellum (T-203) and accumulation of phytoalexins. Appl Environ Microbiol. 2003;69(12):7343\u201353.","journal-title":"Appl Environ Microbiol"},{"issue":"12","key":"5513_CR32","doi-asserted-by":"publisher","first-page":"5257","DOI":"10.1007\/s00253-016-7539-z","volume":"100","author":"SH Kim","year":"2016","unstructured":"Kim SH, Vujanovic V. Relationship between mycoparasites lifestyles and biocontrol behaviors against Fusarium spp. and mycotoxins production. Appl Microbiol Biotechnol. 2016;100(12):5257\u201372.","journal-title":"Appl Microbiol Biotechnol"},{"issue":"5","key":"5513_CR33","doi-asserted-by":"publisher","first-page":"1251","DOI":"10.1007\/s00425-016-2482-x","volume":"243","author":"V Pandey","year":"2016","unstructured":"Pandey V, Ansari MW, Tula S, Yadav S, Sahoo RK, Shukla N, Bains G, Badal S, Chandra S, Gaur AK, Kumar A, Shukla A, Kumar J, Tuteja N. Dose-dependent response of Trichoderma harzianum in improving drought tolerance in rice genotypes. Planta. 2016;243(5):1251\u201364.","journal-title":"Planta"},{"issue":"1","key":"5513_CR34","doi-asserted-by":"publisher","first-page":"359","DOI":"10.1007\/s00709-017-1157-1","volume":"255","author":"J Nawrocka","year":"2018","unstructured":"Nawrocka J, Malolepsza U, Szymczak K, Szczech M. Involvement of metabolic components, volatile compounds, PR proteins, and mechanical strengthening in multilayer protection of cucumber plants against Rhizoctonia solani activated by Trichoderma atroviride TRS25. Protoplasma. 2018;255(1):359\u201373.","journal-title":"Protoplasma"},{"issue":"2","key":"5513_CR35","doi-asserted-by":"publisher","first-page":"202","DOI":"10.3109\/07388551.2015.1130683","volume":"37","author":"W Raza","year":"2017","unstructured":"Raza W, Ling N, Zhang R, Huang Q, Xu Y, Shen Q. Success evaluation of the biological control of Fusarium wilts of cucumber, banana, and tomato since 2000 and future research strategies. Crit Rev Biotechnol. 2017;37(2):202\u201312.","journal-title":"Crit Rev Biotechnol"},{"key":"5513_CR36","first-page":"3","volume-title":"Kubicek CP, Harman GE, editiors. Trichoderma and gliocladium, basic biology, taxonomy and genetics. Taylor and Francis ltd, London","author":"W Gams","year":"1998","unstructured":"Gams W, Morphology BJ. Identification of Trichoderma. In: Kubicek CP, Harman GE, editiors. Trichoderma and gliocladium, basic biology, taxonomy and genetics. Taylor and Francis ltd, London; 1998. p. 3\u201334."},{"issue":"7","key":"5513_CR37","doi-asserted-by":"publisher","first-page":"1870","DOI":"10.1093\/molbev\/msw054","volume":"33","author":"S Kumar","year":"2016","unstructured":"Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016;33(7):1870\u20134.","journal-title":"Mol Biol Evol"},{"key":"5513_CR38","doi-asserted-by":"crossref","unstructured":"Yedidia II, Benhamou N, Chet II. Induction of defense responses in cucumber plants (Cucumis sativus L. ) by the biocontrol agent trichoderma harzianum. Appl Environ Microbiol 1999; 65(3):1061\u20131070.","DOI":"10.1128\/AEM.65.3.1061-1070.1999"},{"issue":"3","key":"5513_CR39","doi-asserted-by":"publisher","first-page":"318","DOI":"10.1007\/s12088-016-0581-9","volume":"56","author":"Y Li","year":"2016","unstructured":"Li Y, Sun R, Yu J, Saravanakumar K, Chen J. Antagonistic and biocontrol potential of Trichoderma asperellum ZJSX5003 against the maize stalk rot pathogen Fusarium graminearum. Indian J Microbiol. 2016;56(3):318\u201327.","journal-title":"Indian J Microbiol"},{"key":"5513_CR40","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.cbd.2018.10.003","volume":"29","author":"Z Wang","year":"2018","unstructured":"Wang Z, Cui J, Song J, Gou M, Wang H, Gao K, Qiu X, Wang X, Chang Y. Integration of small RNAs and mRNAs by high-throughput sequencing reveals a complex regulatory network in Chinese sea cucumber, Russian sea cucumber and their hybrids. Comp Biochem Physiol Part D Genomics Proteomics. 2018;29:1\u201313.","journal-title":"Comp Biochem Physiol Part D Genomics Proteomics"},{"key":"5513_CR41","doi-asserted-by":"publisher","DOI":"10.1038\/hortres.2017.80","volume":"4","author":"X Ye","year":"2017","unstructured":"Ye X, Wang H, Chen P, Fu B, Zhang M, Li J, Zheng X, Tan B, Feng J. Combination of iTRAQ proteomics and RNA-seq transcriptomics reveals multiple levels of regulation in phytoplasma-infected Ziziphus jujuba mill. Hortic Res. 2017;4:17080.","journal-title":"Hortic Res"},{"issue":"3","key":"5513_CR42","doi-asserted-by":"publisher","first-page":"1051","DOI":"10.1021\/acs.jproteome.5b01117","volume":"15","author":"NP Norskov","year":"2016","unstructured":"Norskov NP, Kyro C, Olsen A, Tjonneland A, Knudsen KE. High-throughput LC-MS\/MS method for direct quantification of Glucuronidated, sulfated, and free Enterolactone in human plasma. J Proteome Res. 2016;15(3):1051\u20138.","journal-title":"J Proteome Res"},{"key":"5513_CR43","doi-asserted-by":"crossref","unstructured":"Druzhinina IS, Komon-Zelazowska M, Kredics L, Hatvani L, Antal Z, Belayneh T, Kubicek CP. Alternative reproductive strategies of Hypocrea orientalis and genetically close but clonal Trichoderma longibrachiatum, both capable of causing invasive mycoses of humans. Microbiology 2008; 154(Pt 11):3447\u20133459.","DOI":"10.1099\/mic.0.2008\/021196-0"},{"issue":"5","key":"5513_CR44","doi-asserted-by":"publisher","first-page":"1213","DOI":"10.3852\/11-429","volume":"104","author":"WM Jaklitsch","year":"2012","unstructured":"Jaklitsch WM, Voglmayr H. Hypocrea britdaniae and H. Foliicola: two remarkable new European species. Mycologia. 2012;104(5):1213\u201321.","journal-title":"Mycologia"},{"issue":"1","key":"5513_CR45","doi-asserted-by":"publisher","first-page":"58","DOI":"10.1111\/j.1574-6968.2009.01765.x","volume":"300","author":"L Kredics","year":"2009","unstructured":"Kredics L, Kocsube S, Nagy L, Komon-Zelazowska M, Manczinger L, Sajben E, Nagy A, Vagvolgyi C, Kubicek CP, Druzhinina IS, Hatvani L. Molecular identification of Trichoderma species associated with Pleurotus ostreatus and natural substrates of the oyster mushroom. FEMS Microbiol Lett. 2009;300(1):58\u201367.","journal-title":"FEMS Microbiol Lett"},{"key":"5513_CR46","doi-asserted-by":"publisher","first-page":"1","DOI":"10.3114\/sim.2009.63.01","volume":"63","author":"WM Jaklitsch","year":"2009","unstructured":"Jaklitsch WM. European species of Hypocrea part I. The green-spored species. Stud Mycol. 2009;63:1\u201391.","journal-title":"Stud Mycol"},{"issue":"1","key":"5513_CR47","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s13225-011-0088-y","volume":"48","author":"WM Jaklitsch","year":"2011","unstructured":"Jaklitsch WM. European species of Hypocrea part II: species with hyaline ascospores. Fungal Divers. 2011;48(1):1\u2013250.","journal-title":"Fungal Divers"},{"issue":"4","key":"5513_CR48","doi-asserted-by":"publisher","first-page":"2147","DOI":"10.1104\/pp.108.123810","volume":"147","author":"M Shoresh","year":"2008","unstructured":"Shoresh M, Harman GE. The molecular basis of shoot responses of maize seedlings to Trichoderma harzianum T22 inoculation of the root: a proteomic approach. Plant Physiol. 2008;147(4):2147\u201363.","journal-title":"Plant Physiol"},{"issue":"4","key":"5513_CR49","doi-asserted-by":"publisher","first-page":"1526","DOI":"10.1104\/pp.110.157370","volume":"153","author":"J Huang","year":"2010","unstructured":"Huang J, Gu M, Lai Z, Fan B, Shi K, Zhou YH, Yu JQ, Chen Z. Functional analysis of the Arabidopsis PAL gene family in plant growth, development, and response to environmental stress. Plant Physiol. 2010;153(4):1526\u201338.","journal-title":"Plant Physiol"},{"issue":"11","key":"5513_CR50","doi-asserted-by":"publisher","first-page":"941","DOI":"10.1016\/j.plaphy.2008.06.011","volume":"46","author":"J Sels","year":"2008","unstructured":"Sels J, Mathys J, De Coninck BM, Cammue BP, De Bolle MF. Plant pathogenesis-related (PR) proteins: a focus on PR peptides. Plant Physiol Biochem. 2008;46(11):941\u201350.","journal-title":"Plant Physiol Biochem"},{"issue":"4","key":"5513_CR51","doi-asserted-by":"publisher","first-page":"749","DOI":"10.1016\/j.cell.2006.03.037","volume":"125","author":"C Zipfel","year":"2006","unstructured":"Zipfel C, Kunze G, Chinchilla D, Caniard A, Jones JD, Boller T, Felix G. Perception of the bacterial PAMP EF-Tu by the receptor EFR restricts agrobacterium-mediated transformation. Cell. 2006;125(4):749\u201360.","journal-title":"Cell"},{"issue":"13","key":"5513_CR52","doi-asserted-by":"publisher","first-page":"1445","DOI":"10.1016\/j.phytochem.2010.04.027","volume":"71","author":"J Svoboda","year":"2010","unstructured":"Svoboda J, Boland W. Plant defense elicitors: analogues of jasmonoyl-isoleucine conjugate. Phytochemistry. 2010;71(13):1445\u20139.","journal-title":"Phytochemistry"},{"issue":"2","key":"5513_CR53","doi-asserted-by":"publisher","first-page":"149","DOI":"10.1007\/s11120-005-1001-x","volume":"85","author":"PW Pare","year":"2005","unstructured":"Pare PW, Farag MA, Krishnamachari V, Zhang H, Ryu CM, Kloepper JW. Elicitors and priming agents initiate plant defense responses. Photosynth Res. 2005;85(2):149\u201359.","journal-title":"Photosynth Res"},{"issue":"5","key":"5513_CR54","doi-asserted-by":"publisher","first-page":"537","DOI":"10.1094\/PHYTO-03-16-0139-R","volume":"107","author":"S Sarrocco","year":"2017","unstructured":"Sarrocco S, Matarese F, Baroncelli R, Vannacci G, Seidl-Seiboth V, Kubicek CP, Vergara M. The constitutive Endopolygalacturonase TvPG2 regulates the induction of plant systemic resistance by Trichoderma virens. Phytopathology. 2017;107(5):537\u201344.","journal-title":"Phytopathology"},{"issue":"2","key":"5513_CR55","doi-asserted-by":"publisher","first-page":"171","DOI":"10.1094\/PHYTO.2004.94.2.171","volume":"94","author":"LE Hanson","year":"2004","unstructured":"Hanson LE, Howell CR. Elicitors of plant defense responses from biocontrol strains of Trichoderma viren. Phytopathology. 2004;94(2):171\u20136.","journal-title":"Phytopathology"},{"issue":"37","key":"5513_CR56","doi-asserted-by":"publisher","first-page":"28902","DOI":"10.1074\/jbc.M110.116657","volume":"285","author":"EK Petutschnig","year":"2010","unstructured":"Petutschnig EK, Jones AM, Serazetdinova L, Lipka U, Lipka V. The lysin motif receptor-like kinase (LysM-RLK) CERK1 is a major chitin-binding protein in Arabidopsis thaliana and subject to chitin-induced phosphorylation. J Biol Chem. 2010;285(37):28902\u201311.","journal-title":"J Biol Chem"},{"issue":"17","key":"5513_CR57","doi-asserted-by":"publisher","first-page":"6237","DOI":"10.1093\/jxb\/ers279","volume":"63","author":"MC Palmieri","year":"2012","unstructured":"Palmieri MC, Perazzolli M, Matafora V, Moretto M, Bachi A, Pertot I. Proteomic analysis of grapevine resistance induced by Trichoderma harzianum T39 reveals specific defence pathways activated against downy mildew. J Exp Bot. 2012;63(17):6237\u201351.","journal-title":"J Exp Bot"},{"key":"5513_CR58","doi-asserted-by":"publisher","first-page":"660","DOI":"10.1186\/1471-2164-13-660","volume":"13","author":"M Perazzolli","year":"2012","unstructured":"Perazzolli M, Moretto M, Fontana P, Ferrarini A, Velasco R, Moser C, Delledonne M, Pertot I. Downy mildew resistance induced by Trichoderma harzianum T39 in susceptible grapevines partially mimics transcriptional changes of resistant genotypes. BMC Genomics. 2012;13:660.","journal-title":"BMC Genomics"}],"container-title":["BMC Genomics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12864-019-5513-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s12864-019-5513-8\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12864-019-5513-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,2,18]],"date-time":"2020-02-18T10:27:34Z","timestamp":1582021654000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcgenomics.biomedcentral.com\/articles\/10.1186\/s12864-019-5513-8"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,2,18]]},"references-count":58,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2019,12]]}},"alternative-id":["5513"],"URL":"https:\/\/doi.org\/10.1186\/s12864-019-5513-8","relation":{},"ISSN":["1471-2164"],"issn-type":[{"value":"1471-2164","type":"electronic"}],"subject":[],"published":{"date-parts":[[2019,2,18]]},"assertion":[{"value":"29 August 2018","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"6 February 2019","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"18 February 2019","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"The authors confirm that the seeds of cucumber (<i>Cucumis sativus<\/i> L.) were purchased from Tianjin Kernel Cucumber Research Institute (Tianjin, China). All experiments were conducted in accordance with the local legislation for plant material handling.","order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"The authors declare that there are no conflicts of interest.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}},{"value":"Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Publisher\u2019s Note"}}],"article-number":"144"}}