{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,8]],"date-time":"2026-07-08T05:36:08Z","timestamp":1783488968563,"version":"3.55.0"},"reference-count":91,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2021,6,18]],"date-time":"2021-06-18T00:00:00Z","timestamp":1623974400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2021,6,18]],"date-time":"2021-06-18T00:00:00Z","timestamp":1623974400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Genomics"],"published-print":{"date-parts":[[2021,12]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:sec>\n                <jats:title>Background<\/jats:title>\n                <jats:p>A number of studies have examined mRNA expression profiles of bovine endometrium at estrus and around the peri-implantation period of pregnancy. However, to date, these studies have been performed on the whole endometrium which is a complex tissue. Consequently, the knowledge of cell-specific gene expression, when analysis performed with whole endometrium, is still weak and obviously limits the relevance of the results of gene expression studies. Thus, the aim of this study was to characterize specific transcriptome of the three main cell-types of the bovine endometrium at day-15 of the estrus cycle.<\/jats:p>\n              <\/jats:sec><jats:sec>\n                <jats:title>Results<\/jats:title>\n                <jats:p>In the RNA-Seq analysis, the number of expressed genes detected over 10 transcripts per million was 6622, 7814 and 8242 for LE, GE and ST respectively. ST expressed exclusively 1236 genes while only 551 transcripts were specific to the GE and 330 specific to LE. For ST, over-represented biological processes included many regulation processes and response to stimulus, cell communication and cell adhesion, extracellular matrix organization as well as developmental process. For GE, cilium organization, cilium movement, protein localization to cilium and microtubule-based process were the only four main biological processes enriched. For LE, over-represented biological processes were enzyme linked receptor protein signaling pathway, cell-substrate adhesion and circulatory system process.<\/jats:p>\n              <\/jats:sec><jats:sec>\n                <jats:title>Conclusion<\/jats:title>\n                <jats:p>The data show that each endometrial cell-type has a distinct molecular signature and provide a significantly improved overview on the biological process supported by specific cell-types. The most interesting result is that stromal cells express more genes than the two epithelial types and are associated with a greater number of pathways and ontology terms.<\/jats:p>\n              <\/jats:sec>","DOI":"10.1186\/s12864-021-07712-0","type":"journal-article","created":{"date-parts":[[2021,6,17]],"date-time":"2021-06-17T23:04:12Z","timestamp":1623971052000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":21,"title":["Analysis of the transcriptome of bovine endometrial cells isolated by laser micro-dissection (1): specific signatures of stromal, glandular and luminal epithelial cells"],"prefix":"10.1186","volume":"22","author":[{"given":"Wiruntita","family":"Chankeaw","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sandra","family":"Lignier","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Christophe","family":"Richard","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Theodoros","family":"Ntallaris","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mariam","family":"Raliou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yongzhi","family":"Guo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Damien","family":"Plassard","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Claudia","family":"Bevilacqua","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Olivier","family":"Sandra","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"G\u00f6ran","family":"Andersson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Patrice","family":"Humblot","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3954-7663","authenticated-orcid":false,"given":"Gilles","family":"Charpigny","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2021,6,18]]},"reference":[{"issue":"4","key":"7712_CR1","doi-asserted-by":"publisher","first-page":"315","DOI":"10.1002\/ar.1092040404","volume":"204","author":"M Guillomot","year":"1982","unstructured":"Guillomot M, Guay P. Ultrastructural features of the cell surfaces of uterine and trophoblastic epithelia during embryo attachment in the cow. Anat Rec. 1982;204(4):315\u201322. https:\/\/doi.org\/10.1002\/ar.1092040404.","journal-title":"Anat Rec"},{"issue":"1","key":"7712_CR2","doi-asserted-by":"publisher","first-page":"2","DOI":"10.1095\/biolreprod.103.024133","volume":"71","author":"TE Spencer","year":"2004","unstructured":"Spencer TE, Johnson GA, Burghardt RC, Bazer FW. Progesterone and placental hormone actions on the uterus: insights from domestic animals. Biol Reprod. 2004;71(1):2\u201310. https:\/\/doi.org\/10.1095\/biolreprod.103.024133.","journal-title":"Biol Reprod"},{"issue":"3","key":"7712_CR3","doi-asserted-by":"publisher","first-page":"889","DOI":"10.1677\/jme.1.01799","volume":"34","author":"S Bauersachs","year":"2005","unstructured":"Bauersachs S, Ulbrich SE, Gross K, Schmidt SE, Meyer HH, Einspanier R, et al. Gene expression profiling of bovine endometrium during the oestrous cycle: detection of molecular pathways involved in functional changes. J Mol Endocrinol. 2005;34(3):889\u2013908. https:\/\/doi.org\/10.1677\/jme.1.01799.","journal-title":"J Mol Endocrinol"},{"issue":"2","key":"7712_CR4","doi-asserted-by":"publisher","first-page":"225","DOI":"10.1530\/REP-07-0415","volume":"135","author":"K Mitko","year":"2008","unstructured":"Mitko K, Ulbrich SE, Wenigerkind H, Sinowatz F, Blum H, Wolf E, et al. Dynamic changes in messenger RNA profiles of bovine endometrium during the oestrous cycle. Reproduction. 2008;135(2):225\u201340. https:\/\/doi.org\/10.1530\/REP-07-0415.","journal-title":"Reproduction"},{"issue":"4","key":"7712_CR5","doi-asserted-by":"publisher","first-page":"784","DOI":"10.1095\/biolreprod.108.074336","volume":"81","author":"N Forde","year":"2009","unstructured":"Forde N, Carter F, Fair T, Crowe MA, Evans AC, Spencer TE, et al. Progesterone-regulated changes in endometrial gene expression contribute to advanced conceptus development in cattle. Biol Reprod. 2009;81(4):784\u201394. https:\/\/doi.org\/10.1095\/biolreprod.108.074336.","journal-title":"Biol Reprod"},{"issue":"1","key":"7712_CR6","doi-asserted-by":"publisher","first-page":"144","DOI":"10.1095\/biolreprod.110.090019","volume":"85","author":"N Forde","year":"2011","unstructured":"Forde N, Carter F, Spencer TE, Bazer FW, Sandra O, Mansouri-Attia N, et al. Conceptus-induced changes in the endometrial transcriptome: how soon does the cow know she is pregnant? Biol Reprod. 2011;85(1):144\u201356. https:\/\/doi.org\/10.1095\/biolreprod.110.090019.","journal-title":"Biol Reprod"},{"issue":"3","key":"7712_CR7","doi-asserted-by":"publisher","first-page":"223","DOI":"10.1530\/REP-19-0064","volume":"158","author":"C Passaro","year":"2019","unstructured":"Passaro C, Tutt D, Bages-Arnal S, Maicas C, Laguna-Barraza R, Gutierrez-Adan A, et al. Global transcriptomic response of bovine endometrium to blastocyst-stage embryos. Reproduction. 2019;158(3):223\u201335. https:\/\/doi.org\/10.1530\/REP-19-0064.","journal-title":"Reproduction"},{"issue":"2","key":"7712_CR8","doi-asserted-by":"publisher","first-page":"365","DOI":"10.1093\/biolre\/ioy199","volume":"100","author":"DJ Mathew","year":"2019","unstructured":"Mathew DJ, Sanchez JM, Passaro C, Charpigny G, Behura SK, Spencer TE, et al. Interferon tau-dependent and independent effects of the bovine conceptus on the endometrial transcriptomedagger. Biol Reprod. 2019;100(2):365\u201380. https:\/\/doi.org\/10.1093\/biolre\/ioy199.","journal-title":"Biol Reprod"},{"issue":"8","key":"7712_CR9","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0069444","volume":"8","author":"MA Minten","year":"2013","unstructured":"Minten MA, Bilby TR, Bruno RG, Allen CC, Madsen CA, Wang Z, et al. Effects of fertility on gene expression and function of the bovine endometrium. PLoS One. 2013;8(8):e69444. https:\/\/doi.org\/10.1371\/journal.pone.0069444.","journal-title":"PLoS One"},{"issue":"2","key":"7712_CR10","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1095\/biolreprod.116.141390","volume":"95","author":"TW Geary","year":"2016","unstructured":"Geary TW, Burns GW, Moraes JG, Moss JI, Denicol AC, Dobbs KB, et al. Identification of beef heifers with superior uterine capacity for pregnancy. Biol Reprod. 2016;95(2):47. https:\/\/doi.org\/10.1095\/biolreprod.116.141390.","journal-title":"Biol Reprod"},{"issue":"1","key":"7712_CR11","doi-asserted-by":"publisher","first-page":"86","DOI":"10.1093\/biolre\/ioy185","volume":"100","author":"JM Sanchez","year":"2019","unstructured":"Sanchez JM, Passaro C, Forde N, Browne JA, Behura SK, Fernandez-Fuertes B, et al. Do differences in the endometrial transcriptome between uterine horns ipsilateral and contralateral to the corpus luteum influence conceptus growth to day 14 in cattle? Biol Reprod. 2019;100(1):86\u2013100. https:\/\/doi.org\/10.1093\/biolre\/ioy185.","journal-title":"Biol Reprod"},{"issue":"1","key":"7712_CR12","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1152\/physiolgenomics.90404.2008","volume":"39","author":"N Mansouri-Attia","year":"2009","unstructured":"Mansouri-Attia N, Aubert J, Reinaud P, Giraud-Delville C, Taghouti G, Galio L, et al. Gene expression profiles of bovine caruncular and intercaruncular endometrium at implantation. Physiol Genomics. 2009;39(1):14\u201327. https:\/\/doi.org\/10.1152\/physiolgenomics.90404.2008.","journal-title":"Physiol Genomics"},{"issue":"7","key":"7712_CR13","doi-asserted-by":"publisher","first-page":"3375","DOI":"10.1210\/en.2005-1665","volume":"147","author":"AL Niklaus","year":"2006","unstructured":"Niklaus AL, Pollard JW. Mining the mouse transcriptome of receptive endometrium reveals distinct molecular signatures for the luminal and glandular epithelium. Endocrinology. 2006;147(7):3375\u201390. https:\/\/doi.org\/10.1210\/en.2005-1665.","journal-title":"Endocrinology"},{"issue":"4","key":"7712_CR14","doi-asserted-by":"publisher","first-page":"88","DOI":"10.1095\/biolreprod.116.141945","volume":"95","author":"K Brooks","year":"2016","unstructured":"Brooks K, Burns GW, Moraes JG, Spencer TE. Analysis of the uterine epithelial and conceptus transcriptome and luminal fluid proteome during the Peri-implantation period of pregnancy in sheep. Biol Reprod. 2016;95(4):88. https:\/\/doi.org\/10.1095\/biolreprod.116.141945.","journal-title":"Biol Reprod"},{"issue":"1","key":"7712_CR15","doi-asserted-by":"publisher","first-page":"459","DOI":"10.1186\/s12864-018-4855-y","volume":"19","author":"S Zeng","year":"2018","unstructured":"Zeng S, Bick J, Ulbrich SE, Bauersachs S. Cell type-specific analysis of transcriptome changes in the porcine endometrium on day 12 of pregnancy. BMC Genomics. 2018;19(1):459. https:\/\/doi.org\/10.1186\/s12864-018-4855-y.","journal-title":"BMC Genomics"},{"issue":"1","key":"7712_CR16","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1152\/physiolgenomics.00064.2009","volume":"39","author":"DC Wathes","year":"2009","unstructured":"Wathes DC, Cheng ZR, Chowdhury W, Fenwick MA, Fitzpatrick R, Morris DG, et al. Negative energy balance alters global gene expression and immune responses in the uterus of postpartum dairy cows. Physiol Genomics. 2009;39(1):1\u201313. https:\/\/doi.org\/10.1152\/physiolgenomics.00064.2009.","journal-title":"Physiol Genomics"},{"key":"7712_CR17","doi-asserted-by":"publisher","unstructured":"Chankeaw W, Lignier S, Richard C, Ntallaris T, Raliou M, G. Y, Plassard D, Bevilacqua C, Sandra O, Andersson G et al. Analysis of the transcriptome of bovine endometrial cells isolated by laser micro-dissection (2): specific impacts of post-partum negative energy balance on stromal, glandular and luminal epithelial cells. BMC Genomics. 2021. https:\/\/doi.org\/10.1186\/s12864-021-07713-z.","DOI":"10.1186\/s12864-021-07713-z"},{"issue":"4","key":"7712_CR18","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1007\/s12064-012-0162-3","volume":"131","author":"GP Wagner","year":"2012","unstructured":"Wagner GP, Kin K, Lynch VJ. Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples. Theory Biosci. 2012;131(4):281\u20135. https:\/\/doi.org\/10.1007\/s12064-012-0162-3.","journal-title":"Theory Biosci"},{"issue":"1","key":"7712_CR19","doi-asserted-by":"publisher","first-page":"66","DOI":"10.1186\/1477-7827-2-66","volume":"2","author":"A Yanaihara","year":"2004","unstructured":"Yanaihara A, Otsuka Y, Iwasaki S, Koide K, Aida T, Okai T. Comparison in gene expression of secretory human endometrium using laser microdissection. Reprod Biol Endocrinol. 2004;2(1):66. https:\/\/doi.org\/10.1186\/1477-7827-2-66.","journal-title":"Reprod Biol Endocrinol"},{"issue":"3","key":"7712_CR20","doi-asserted-by":"publisher","first-page":"496","DOI":"10.1071\/RD18144","volume":"31","author":"I Scaravaggi","year":"2019","unstructured":"Scaravaggi I, Borel N, Romer R, Imboden I, Ulbrich SE, Zeng S, et al. Cell type-specific endometrial transcriptome changes during initial recognition of pregnancy in the mare. Reprod Fertil Dev. 2019;31(3):496\u2013508. https:\/\/doi.org\/10.1071\/RD18144.","journal-title":"Reprod Fertil Dev"},{"issue":"10","key":"7712_CR21","doi-asserted-by":"publisher","first-page":"5657","DOI":"10.3168\/jds.2011-5114","volume":"95","author":"RL Cerri","year":"2012","unstructured":"Cerri RL, Thompson IM, Kim IH, Ealy AD, Hansen PJ, Staples CR, et al. Effects of lactation and pregnancy on gene expression of endometrium of Holstein cows at day 17 of the estrous cycle or pregnancy. J Dairy Sci. 2012;95(10):5657\u201375. https:\/\/doi.org\/10.3168\/jds.2011-5114.","journal-title":"J Dairy Sci"},{"issue":"6220","key":"7712_CR22","doi-asserted-by":"publisher","first-page":"1260419","DOI":"10.1126\/science.1260419","volume":"347","author":"M Uhlen","year":"2015","unstructured":"Uhlen M, Fagerberg L, Hallstrom BM, Lindskog C, Oksvold P, Mardinoglu A, et al. Proteomics. Tissue-based map of the human proteome. Science. 2015;347(6220):1260419.","journal-title":"Science"},{"key":"7712_CR23","doi-asserted-by":"publisher","unstructured":"Lara E, Rivera N, Cabezas J, Navarrete F, Saravia F, Rodriguez-Alvarez L, Castro FO: Endometrial Stem Cells in Farm Animals: Potential Role in Uterine Physiology and Pathology. Bioengineering (Basel). 2018;5(3):75. https:\/\/doi.org\/10.3390\/bioengineering50300753.","DOI":"10.3390\/bioengineering50300753"},{"issue":"8","key":"7712_CR24","doi-asserted-by":"publisher","first-page":"3922","DOI":"10.1210\/en.2007-0321","volume":"148","author":"MC Satterfield","year":"2007","unstructured":"Satterfield MC, Dunlap KA, Hayashi K, Burghardt RC, Spencer TE, Bazer FW. Tight and adherens junctions in the ovine uterus: differential regulation by pregnancy and progesterone. Endocrinology. 2007;148(8):3922\u201331. https:\/\/doi.org\/10.1210\/en.2007-0321.","journal-title":"Endocrinology"},{"issue":"5","key":"7712_CR25","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1095\/biolreprod.112.098871","volume":"86","author":"SN Reardon","year":"2012","unstructured":"Reardon SN, King ML, MacLean JA 2nd, Mann JL, DeMayo FJ, Lydon JP, et al. CDH1 is essential for endometrial differentiation, gland development, and adult function in the mouse uterus. Biol Reprod. 2012;86(5):141 141\u2013110.","journal-title":"Biol Reprod"},{"issue":"13","key":"7712_CR26","doi-asserted-by":"publisher","first-page":"1564","DOI":"10.1007\/s00018-006-6014-x","volume":"63","author":"MW Wendeler","year":"2006","unstructured":"Wendeler MW, Jung R, Himmelbauer H, Gessner R. Unique gene structure and paralogy define the 7D-cadherin family. Cell Mol Life Sci. 2006;63(13):1564\u201373. https:\/\/doi.org\/10.1007\/s00018-006-6014-x.","journal-title":"Cell Mol Life Sci"},{"issue":"3","key":"7712_CR27","doi-asserted-by":"publisher","first-page":"270","DOI":"10.1016\/j.scr.2015.02.002","volume":"14","author":"S Alimperti","year":"2015","unstructured":"Alimperti S, Andreadis ST. CDH2 and CDH11 act as regulators of stem cell fate decisions. Stem Cell Res. 2015;14(3):270\u201382. https:\/\/doi.org\/10.1016\/j.scr.2015.02.002.","journal-title":"Stem Cell Res"},{"issue":"9","key":"7712_CR28","doi-asserted-by":"publisher","first-page":"775","DOI":"10.1002\/gcc.20787","volume":"49","author":"AV Andreeva","year":"2010","unstructured":"Andreeva AV, Kutuzov MA. Cadherin 13 in cancer. Genes Chromosomes Cancer. 2010;49(9):775\u201390. https:\/\/doi.org\/10.1002\/gcc.20787.","journal-title":"Genes Chromosomes Cancer"},{"issue":"7","key":"7712_CR29","doi-asserted-by":"publisher","first-page":"705","DOI":"10.1507\/endocrj.EJ13-0442","volume":"61","author":"M Hata","year":"2014","unstructured":"Hata M, Yamanegi K, Yamada N, Ohyama H, Yukitatsu Y, Nakasho K, et al. Estrogen decreases the expression of claudin-5 in vascular endothelial cells in the murine uterus. Endocr J. 2014;61(7):705\u201315. https:\/\/doi.org\/10.1507\/endocrj.EJ13-0442.","journal-title":"Endocr J"},{"key":"7712_CR30","doi-asserted-by":"publisher","first-page":"715","DOI":"10.2147\/JPR.S163611","volume":"11","author":"B Bellessort","year":"2018","unstructured":"Bellessort B, Bachelot A, Grouthier V, De Lombares C, Narboux-Neme N, Garagnani P, et al. Comparative analysis of molecular signatures suggests the use of gabapentin for the management of endometriosis-associated pain. J Pain Res. 2018;11:715\u201325. https:\/\/doi.org\/10.2147\/JPR.S163611.","journal-title":"J Pain Res"},{"key":"7712_CR31","doi-asserted-by":"publisher","unstructured":"Luk IY, Reehorst CM, Mariadason JM: ELF3, ELF5, EHF and SPDEF Transcription Factors in Tissue Homeostasis and Cancer. Molecules. 2018;23(9):2191. https:\/\/doi.org\/10.3390\/molecules23092191.","DOI":"10.3390\/molecules23092191"},{"issue":"3","key":"7712_CR32","doi-asserted-by":"publisher","first-page":"602","DOI":"10.1095\/biolreprod.108.073890","volume":"80","author":"H Gao","year":"2009","unstructured":"Gao H, Wu G, Spencer TE, Johnson GA, Bazer FW. Select nutrients in the ovine uterine lumen. III. Cationic amino acid transporters in the ovine uterus and peri-implantation conceptuses. Biol Reprod. 2009;80(3):602\u20139. https:\/\/doi.org\/10.1095\/biolreprod.108.073890.","journal-title":"Biol Reprod"},{"issue":"6","key":"7712_CR33","doi-asserted-by":"publisher","first-page":"1196","DOI":"10.1095\/biolreprod.108.075440","volume":"80","author":"H Gao","year":"2009","unstructured":"Gao H, Wu G, Spencer TE, Johnson GA, Bazer FW. Select nutrients in the ovine uterine lumen. IV. Expression of neutral and acidic amino acid transporters in ovine uteri and peri-implantation conceptuses. Biol Reprod. 2009;80(6):1196\u2013208. https:\/\/doi.org\/10.1095\/biolreprod.108.075440.","journal-title":"Biol Reprod"},{"issue":"1","key":"7712_CR34","doi-asserted-by":"publisher","first-page":"94","DOI":"10.1095\/biolreprod.108.071654","volume":"80","author":"H Gao","year":"2009","unstructured":"Gao H, Wu G, Spencer TE, Johnson GA, Bazer FW. Select nutrients in the ovine uterine lumen. Ii. Glucose transporters in the uterus and peri-implantation conceptuses. Biol Reprod. 2009;80(1):94\u2013104. https:\/\/doi.org\/10.1095\/biolreprod.108.071654.","journal-title":"Biol Reprod"},{"issue":"1","key":"7712_CR35","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1152\/physiolgenomics.00162.2009","volume":"41","author":"N Forde","year":"2010","unstructured":"Forde N, Spencer TE, Bazer FW, Song G, Roche JF, Lonergan P. Effect of pregnancy and progesterone concentration on expression of genes encoding for transporters or secreted proteins in the bovine endometrium. Physiol Genomics. 2010;41(1):53\u201362. https:\/\/doi.org\/10.1152\/physiolgenomics.00162.2009.","journal-title":"Physiol Genomics"},{"issue":"4","key":"7712_CR36","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1095\/biolreprod.111.096826","volume":"86","author":"Y Liu","year":"2012","unstructured":"Liu Y, Wang DK, Chen LM. The physiology of bicarbonate transporters in mammalian reproduction. Biol Reprod. 2012;86(4):99. https:\/\/doi.org\/10.1095\/biolreprod.111.096826.","journal-title":"Biol Reprod"},{"issue":"1","key":"7712_CR37","doi-asserted-by":"publisher","first-page":"377","DOI":"10.1146\/annurev.physiol.69.040705.141236","volume":"69","author":"P Satir","year":"2007","unstructured":"Satir P, Christensen ST. Overview of structure and function of mammalian cilia. Annu Rev Physiol. 2007;69(1):377\u2013400. https:\/\/doi.org\/10.1146\/annurev.physiol.69.040705.141236.","journal-title":"Annu Rev Physiol"},{"issue":"11","key":"7712_CR38","doi-asserted-by":"publisher","first-page":"713","DOI":"10.1038\/nrm3667","volume":"14","author":"AJ Roberts","year":"2013","unstructured":"Roberts AJ, Kon T, Knight PJ, Sutoh K, Burgess SA. Functions and mechanics of dynein motor proteins. Nat Rev Mol Cell Biol. 2013;14(11):713\u201326. https:\/\/doi.org\/10.1038\/nrm3667.","journal-title":"Nat Rev Mol Cell Biol"},{"issue":"6","key":"7712_CR39","doi-asserted-by":"publisher","first-page":"457","DOI":"10.1159\/000360155","volume":"198","author":"G Schatz","year":"2013","unstructured":"Schatz G, Schneiter M, Ricka J, Kuhni-Boghenbor K, Tschanz SA, Doherr MG, et al. Ciliary beating plane and wave propagation in the bovine oviduct. Cells Tissues Organs. 2013;198(6):457\u201369. https:\/\/doi.org\/10.1159\/000360155.","journal-title":"Cells Tissues Organs"},{"issue":"1","key":"7712_CR40","doi-asserted-by":"publisher","first-page":"69","DOI":"10.1007\/BF00340050","volume":"104","author":"Y Kojima","year":"1970","unstructured":"Kojima Y, Selander U. Cyclical changes in the fine structure of bovine endometrial gland cells. Z Zellforsch Mikrosk Anat. 1970;104(1):69\u201386. https:\/\/doi.org\/10.1007\/BF00340050.","journal-title":"Z Zellforsch Mikrosk Anat"},{"issue":"1","key":"7712_CR41","first-page":"55","volume":"111","author":"A Hoyes","year":"1972","unstructured":"Hoyes A. The endometrial glands of the pregnant sheep: an ultrastructural study. J Anat. 1972;111(1):55\u201367.","journal-title":"J Anat"},{"issue":"5","key":"7712_CR42","doi-asserted-by":"publisher","first-page":"146","DOI":"10.1095\/biolreprod.111.097089","volume":"86","author":"J Filant","year":"2012","unstructured":"Filant J, Zhou H, Spencer TE. Progesterone inhibits uterine gland development in the neonatal mouse uterus. Biol Reprod. 2012;86(5):146 141-149.","journal-title":"Biol Reprod"},{"issue":"4","key":"7712_CR43","doi-asserted-by":"publisher","first-page":"265","DOI":"10.1111\/j.1600-0897.2010.00901.x","volume":"64","author":"MB Padua","year":"2010","unstructured":"Padua MB, Hansen PJ. Evolution and function of the uterine serpins (SERPINA14). Am J Reprod Immunol. 2010;64(4):265\u201374. https:\/\/doi.org\/10.1111\/j.1600-0897.2010.00901.x.","journal-title":"Am J Reprod Immunol"},{"issue":"11","key":"7712_CR44","doi-asserted-by":"publisher","first-page":"4825","DOI":"10.1210\/en.2005-0768","volume":"146","author":"G Song","year":"2005","unstructured":"Song G, Spencer TE, Bazer FW. Cathepsins in the ovine uterus: regulation by pregnancy, progesterone, and interferon tau. Endocrinology. 2005;146(11):4825\u201333. https:\/\/doi.org\/10.1210\/en.2005-0768.","journal-title":"Endocrinology"},{"issue":"4","key":"7712_CR45","doi-asserted-by":"publisher","first-page":"795","DOI":"10.1095\/biolreprod.108.075184","volume":"81","author":"SE Ulbrich","year":"2009","unstructured":"Ulbrich SE, Frohlich T, Schulke K, Englberger E, Waldschmitt N, Arnold GJ, et al. Evidence for estrogen-dependent uterine serpin (SERPINA14) expression during estrus in the bovine endometrial glandular epithelium and lumen. Biol Reprod. 2009;81(4):795\u2013805. https:\/\/doi.org\/10.1095\/biolreprod.108.075184.","journal-title":"Biol Reprod"},{"issue":"1","key":"7712_CR46","doi-asserted-by":"publisher","first-page":"38","DOI":"10.1186\/1477-7827-9-38","volume":"9","author":"RK Lee","year":"2011","unstructured":"Lee RK, Fan CC, Hwu YM, Lu CH, Lin MH, Chen YJ, et al. SERPINE2, an inhibitor of plasminogen activators, is highly expressed in the human endometrium during the secretory phase. Reprod Biol Endocrinol. 2011;9(1):38. https:\/\/doi.org\/10.1186\/1477-7827-9-38.","journal-title":"Reprod Biol Endocrinol"},{"issue":"2","key":"7712_CR47","doi-asserted-by":"publisher","first-page":"269","DOI":"10.1530\/REP-10-0177","volume":"141","author":"DC Wathes","year":"2011","unstructured":"Wathes DC, Cheng Z, Fenwick MA, Fitzpatrick R, Patton J. Influence of energy balance on the somatotrophic axis and matrix metalloproteinase expression in the endometrium of the postpartum dairy cow. Reproduction. 2011;141(2):269\u201381. https:\/\/doi.org\/10.1530\/REP-10-0177.","journal-title":"Reproduction"},{"issue":"6","key":"7712_CR48","doi-asserted-by":"publisher","first-page":"975","DOI":"10.1095\/biolreprod45.6.975","volume":"45","author":"RD Geisert","year":"1991","unstructured":"Geisert RD, Lee CY, Simmen FA, Zavy MT, Fliss AE, Bazer FW, et al. Expression of messenger RNAs encoding insulin-like growth factor-I, \u2212II, and insulin-like growth factor binding protein-2 in bovine endometrium during the estrous cycle and early pregnancy. Biol Reprod. 1991;45(6):975\u201383. https:\/\/doi.org\/10.1095\/biolreprod45.6.975.","journal-title":"Biol Reprod"},{"issue":"2","key":"7712_CR49","doi-asserted-by":"publisher","first-page":"130","DOI":"10.1152\/physiolgenomics.00106.2011","volume":"44","author":"SD McCarthy","year":"2012","unstructured":"McCarthy SD, Roche JF, Forde N. Temporal changes in endometrial gene expression and protein localization of members of the IGF family in cattle: effects of progesterone and pregnancy. Physiol Genomics. 2012;44(2):130\u201340. https:\/\/doi.org\/10.1152\/physiolgenomics.00106.2011.","journal-title":"Physiol Genomics"},{"issue":"9","key":"7712_CR50","doi-asserted-by":"publisher","first-page":"4295","DOI":"10.1210\/en.2009-0060","volume":"150","author":"RM Simmons","year":"2009","unstructured":"Simmons RM, Erikson DW, Kim J, Burghardt RC, Bazer FW, Johnson GA, et al. Insulin-like growth factor binding protein-1 in the ruminant uterus: potential endometrial marker and regulator of conceptus elongation. Endocrinology. 2009;150(9):4295\u2013305. https:\/\/doi.org\/10.1210\/en.2009-0060.","journal-title":"Endocrinology"},{"issue":"2","key":"7712_CR51","doi-asserted-by":"publisher","first-page":"231","DOI":"10.1677\/joe.0.1650231","volume":"165","author":"RS Robinson","year":"2000","unstructured":"Robinson RS, Mann GE, Gadd TS, Lamming GE, Wathes DC. The expression of the IGF system in the bovine uterus throughout the oestrous cycle and early pregnancy. J Endocrinol. 2000;165(2):231\u201343. https:\/\/doi.org\/10.1677\/joe.0.1650231.","journal-title":"J Endocrinol"},{"issue":"4","key":"7712_CR52","doi-asserted-by":"publisher","first-page":"645","DOI":"10.1016\/j.theriogenology.2015.10.002","volume":"85","author":"S Davoodi","year":"2016","unstructured":"Davoodi S, Cooke RF, Fernandes AC, Cappellozza BI, Vasconcelos JL, Cerri RL. Expression of estrus modifies the gene expression profile in reproductive tissues on day 19 of gestation in beef cows. Theriogenology. 2016;85(4):645\u201355. https:\/\/doi.org\/10.1016\/j.theriogenology.2015.10.002.","journal-title":"Theriogenology"},{"issue":"1\u20132","key":"7712_CR53","doi-asserted-by":"publisher","first-page":"60","DOI":"10.1016\/j.mce.2005.10.004","volume":"245","author":"C Tayade","year":"2005","unstructured":"Tayade C, Esadeg S, Fang Y, Croy BA. Functions of alpha 2 macroglobulins in pregnancy. Mol Cell Endocrinol. 2005;245(1\u20132):60\u20136. https:\/\/doi.org\/10.1016\/j.mce.2005.10.004.","journal-title":"Mol Cell Endocrinol"},{"issue":"5","key":"7712_CR54","doi-asserted-by":"publisher","first-page":"621","DOI":"10.1530\/rep.0.1260621","volume":"126","author":"R Geisert","year":"2003","unstructured":"Geisert R, Ashworth M, Malayer J. Expression of inter--trypsin inhibitor heavy chains in endometrium of cyclic and pregnant gilts. Reproduction. 2003;126(5):621\u20137. https:\/\/doi.org\/10.1530\/rep.0.1260621.","journal-title":"Reproduction"},{"issue":"3","key":"7712_CR55","doi-asserted-by":"publisher","first-page":"193","DOI":"10.1530\/JOE-15-0367","volume":"228","author":"AR O'Connell","year":"2016","unstructured":"O'Connell AR, McNatty KP, Hurst PR, Spencer TE, Bazer FW, Reader KL, et al. Activin a and follistatin during the oestrous cycle and early pregnancy in ewes. J Endocrinol. 2016;228(3):193\u2013203. https:\/\/doi.org\/10.1530\/JOE-15-0367.","journal-title":"J Endocrinol"},{"issue":"1","key":"7712_CR56","doi-asserted-by":"publisher","first-page":"100","DOI":"10.1016\/j.repbio.2013.01.166","volume":"13","author":"D Boruszewska","year":"2013","unstructured":"Boruszewska D, Kowalczyk-Zieba I, Piotrowska-Tomala K, Saulnier-Blache JS, Acosta T, Skarzynski DJ, et al. Which bovine endometrial cells are the source of and target for lysophosphatidic acid? Reprod Biol. 2013;13(1):100\u20133. https:\/\/doi.org\/10.1016\/j.repbio.2013.01.166.","journal-title":"Reprod Biol"},{"issue":"1","key":"7712_CR57","doi-asserted-by":"publisher","first-page":"422","DOI":"10.1210\/en.2008-0749","volume":"150","author":"E Liszewska","year":"2009","unstructured":"Liszewska E, Reinaud P, Billon-Denis E, Dubois O, Robin P, Charpigny G. Lysophosphatidic acid signaling during embryo development in sheep: involvement in prostaglandin synthesis. Endocrinology. 2009;150(1):422\u201334. https:\/\/doi.org\/10.1210\/en.2008-0749.","journal-title":"Endocrinology"},{"issue":"1","key":"7712_CR58","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1016\/j.domaniend.2011.08.003","volume":"42","author":"E Liszewska","year":"2012","unstructured":"Liszewska E, Reinaud P, Dubois O, Charpigny G. Lysophosphatidic acid receptors in ovine uterus during estrous cycle and early pregnancy and their regulation by progesterone. Domest Anim Endocrinol. 2012;42(1):31\u201342. https:\/\/doi.org\/10.1016\/j.domaniend.2011.08.003.","journal-title":"Domest Anim Endocrinol"},{"issue":"1","key":"7712_CR59","doi-asserted-by":"publisher","first-page":"21","DOI":"10.1677\/joe.0.1600021","volume":"160","author":"RS Robinson","year":"1999","unstructured":"Robinson RS, Mann GE, Lamming GE, Wathes DC. The effect of pregnancy on the expression of uterine oxytocin, oestrogen and progesterone receptors during early pregnancy in the cow. J Endocrinol. 1999;160(1):21\u201333. https:\/\/doi.org\/10.1677\/joe.0.1600021.","journal-title":"J Endocrinol"},{"key":"7712_CR60","doi-asserted-by":"crossref","unstructured":"Scolari SC, Pugliesi G, Strefezzi RF, Andrade SC, Coutinho LL, Binelli M. Dynamic remodeling of endometrial extracellular matrix regulates embryo receptivity in cattle. Reproduction. 2016.","DOI":"10.1530\/REP-16-0237"},{"issue":"1","key":"7712_CR61","doi-asserted-by":"publisher","first-page":"49","DOI":"10.1053\/plac.2000.0580","volume":"22","author":"S Hein","year":"2001","unstructured":"Hein S, Yamamoto SY, Okazaki K, Jourdan-LeSaux C, Csiszar K, Bryant-Greenwood GD. Lysyl oxidases: expression in the fetal membranes and placenta. Placenta. 2001;22(1):49\u201357. https:\/\/doi.org\/10.1053\/plac.2000.0580.","journal-title":"Placenta"},{"issue":"5","key":"7712_CR62","doi-asserted-by":"publisher","first-page":"525","DOI":"10.1002\/cbin.10927","volume":"42","author":"C Liu","year":"2018","unstructured":"Liu C, Tong H, Li S, Yan Y. Effect of ECM2 expression on bovine skeletal muscle-derived satellite cell differentiation. Cell Biol Int. 2018;42(5):525\u201332. https:\/\/doi.org\/10.1002\/cbin.10927.","journal-title":"Cell Biol Int"},{"issue":"7","key":"7712_CR63","doi-asserted-by":"publisher","first-page":"865","DOI":"10.1210\/er.2008-0032","volume":"29","author":"GM Gibbs","year":"2008","unstructured":"Gibbs GM, Roelants K, O'Bryan MK. The CAP superfamily: cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins--roles in reproduction, cancer, and immune defense. Endocr Rev. 2008;29(7):865\u201397. https:\/\/doi.org\/10.1210\/er.2008-0032.","journal-title":"Endocr Rev"},{"issue":"9","key":"7712_CR64","doi-asserted-by":"publisher","first-page":"4369","DOI":"10.1210\/jc.2002-020522","volume":"87","author":"B Gurates","year":"2002","unstructured":"Gurates B, Sebastian S, Yang S, Zhou J, Tamura M, Fang Z, et al. WT1 and DAX-1 inhibit aromatase P450 expression in human endometrial and endometriotic stromal cells. J Clin Endocrinol Metab. 2002;87(9):4369\u201377. https:\/\/doi.org\/10.1210\/jc.2002-020522.","journal-title":"J Clin Endocrinol Metab"},{"issue":"4","key":"7712_CR65","doi-asserted-by":"publisher","first-page":"721","DOI":"10.1095\/biolreprod.105.049718","volume":"74","author":"K Hayashi","year":"2006","unstructured":"Hayashi K, Spencer TE. WNT pathways in the neonatal ovine uterus: potential specification of endometrial gland morphogenesis by SFRP2. Biol Reprod. 2006;74(4):721\u201333. https:\/\/doi.org\/10.1095\/biolreprod.105.049718.","journal-title":"Biol Reprod"},{"issue":"6","key":"7712_CR66","doi-asserted-by":"publisher","first-page":"1136","DOI":"10.1095\/biolreprod.108.075226","volume":"80","author":"CE Gargett","year":"2009","unstructured":"Gargett CE, Schwab KE, Zillwood RM, Nguyen HP, Wu D. Isolation and culture of epithelial progenitors and mesenchymal stem cells from human endometrium. Biol Reprod. 2009;80(6):1136\u201345. https:\/\/doi.org\/10.1095\/biolreprod.108.075226.","journal-title":"Biol Reprod"},{"issue":"7","key":"7712_CR67","doi-asserted-by":"publisher","first-page":"666","DOI":"10.1002\/mrd.22334","volume":"81","author":"J Yu","year":"2014","unstructured":"Yu J, Berga SL, Zou W, Sun HY, Johnston-MacAnanny E, Yalcinkaya T, et al. Gap junction blockade induces apoptosis in human endometrial stromal cells. Mol Reprod Dev. 2014;81(7):666\u201375. https:\/\/doi.org\/10.1002\/mrd.22334.","journal-title":"Mol Reprod Dev"},{"issue":"1","key":"7712_CR68","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0170859","volume":"12","author":"I Yotova","year":"2017","unstructured":"Yotova I, Hsu E, Do C, Gaba A, Sczabolcs M, Dekan S, et al. Epigenetic alterations affecting transcription factors and signaling pathways in stromal cells of endometriosis. PLoS One. 2017;12(1):e0170859. https:\/\/doi.org\/10.1371\/journal.pone.0170859.","journal-title":"PLoS One"},{"issue":"12","key":"7712_CR69","doi-asserted-by":"publisher","first-page":"1516","DOI":"10.1111\/rda.13558","volume":"54","author":"B Rodriguez-Alonso","year":"2019","unstructured":"Rodriguez-Alonso B, Hamdi M, Sanchez JM, Maillo V, Gutierrez-Adan A, Lonergan P, et al. An approach to study the local embryo effect on gene expression in the bovine oviduct epithelium in vivo. Reprod Domest Anim. 2019;54(12):1516\u201323. https:\/\/doi.org\/10.1111\/rda.13558.","journal-title":"Reprod Domest Anim"},{"issue":"12","key":"7712_CR70","doi-asserted-by":"publisher","first-page":"3641","DOI":"10.1002\/jcp.25834","volume":"232","author":"W Lim","year":"2017","unstructured":"Lim W, Bae H, Bazer FW, Song G. Brain-derived neurotrophic factor improves proliferation of endometrial epithelial cells by inhibition of endoplasmic reticulum stress during early pregnancy. J Cell Physiol. 2017;232(12):3641\u201351. https:\/\/doi.org\/10.1002\/jcp.25834.","journal-title":"J Cell Physiol"},{"issue":"4","key":"7712_CR71","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0094036","volume":"9","author":"JM Wessels","year":"2014","unstructured":"Wessels JM, Wu L, Leyland NA, Wang H, Foster WG. The brain-uterus connection: brain derived neurotrophic factor (BDNF) and its receptor (Ntrk2) are conserved in the mammalian uterus. PLoS One. 2014;9(4):e94036. https:\/\/doi.org\/10.1371\/journal.pone.0094036.","journal-title":"PLoS One"},{"issue":"4","key":"7712_CR72","doi-asserted-by":"publisher","first-page":"781","DOI":"10.1093\/humrep\/deu004","volume":"29","author":"B Xu","year":"2014","unstructured":"Xu B, Geerts D, Bu Z, Ai J, Jin L, Li Y, et al. Regulation of endometrial receptivity by the highly expressed HOXA9, HOXA11 and HOXD10 HOX-class homeobox genes. Hum Reprod. 2014;29(4):781\u201390. https:\/\/doi.org\/10.1093\/humrep\/deu004.","journal-title":"Hum Reprod"},{"issue":"3","key":"7712_CR73","doi-asserted-by":"publisher","first-page":"311","DOI":"10.1055\/s-2000-12568","volume":"18","author":"GS Daftary","year":"2000","unstructured":"Daftary GS, Taylor HS. Implantation in the human: the role of HOX genes. Semin Reprod Med. 2000;18(3):311\u201320. https:\/\/doi.org\/10.1055\/s-2000-12568.","journal-title":"Semin Reprod Med"},{"key":"7712_CR74","doi-asserted-by":"publisher","first-page":"142","DOI":"10.1016\/j.gep.2017.06.010","volume":"25-26","author":"Y Zhang","year":"2017","unstructured":"Zhang Y, Zhang L, Yu C, Du X, Liu X, Liu J, et al. Effects of interferon tau on endometrial epithelial cells in caprine in vitro. Gene Expr Patterns. 2017;25-26:142\u20138. https:\/\/doi.org\/10.1016\/j.gep.2017.06.010.","journal-title":"Gene Expr Patterns"},{"issue":"3","key":"7712_CR75","doi-asserted-by":"publisher","first-page":"291","DOI":"10.1038\/s41419-018-0317-3","volume":"9","author":"Q Yan","year":"2018","unstructured":"Yan Q, Huang C, Jiang Y, Shan H, Jiang R, Wang J, et al. Calpain7 impairs embryo implantation by downregulating beta3-integrin expression via degradation of HOXA10. Cell Death Dis. 2018;9(3):291. https:\/\/doi.org\/10.1038\/s41419-018-0317-3.","journal-title":"Cell Death Dis"},{"issue":"2","key":"7712_CR76","doi-asserted-by":"publisher","first-page":"346","DOI":"10.1007\/s12010-008-8521-8","volume":"157","author":"F Du","year":"2009","unstructured":"Du F, Yang R, Ma HL, Wang QY, Wei SL. Expression of transcriptional repressor slug gene in mouse endometrium and its effect during embryo implantation. Appl Biochem Biotechnol. 2009;157(2):346\u201355. https:\/\/doi.org\/10.1007\/s12010-008-8521-8.","journal-title":"Appl Biochem Biotechnol"},{"issue":"1","key":"7712_CR77","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1016\/j.domaniend.2013.04.002","volume":"45","author":"B Mishra","year":"2013","unstructured":"Mishra B, Koshi K, Kizaki K, Ushizawa K, Takahashi T, Hosoe M, et al. Expression of ADAMTS1 mRNA in bovine endometrium and placenta during gestation. Domest Anim Endocrinol. 2013;45(1):43\u20138. https:\/\/doi.org\/10.1016\/j.domaniend.2013.04.002.","journal-title":"Domest Anim Endocrinol"},{"key":"7712_CR78","doi-asserted-by":"publisher","first-page":"116","DOI":"10.1016\/j.theriogenology.2018.09.004","volume":"122","author":"S Genis","year":"2018","unstructured":"Genis S, Aris A, Kaur M, Cerri RLA. Effect of metritis on endometrium tissue transcriptome during puerperium in Holstein lactating cows. Theriogenology. 2018;122:116\u201323. https:\/\/doi.org\/10.1016\/j.theriogenology.2018.09.004.","journal-title":"Theriogenology"},{"issue":"7","key":"7712_CR79","doi-asserted-by":"publisher","first-page":"371","DOI":"10.1055\/s-2008-1076714","volume":"116","author":"S Bauersachs","year":"2008","unstructured":"Bauersachs S, Mitko K, Ulbrich SE, Blum H, Wolf E. Transcriptome studies of bovine endometrium reveal molecular profiles characteristic for specific stages of estrous cycle and early pregnancy. Exp Clin Endocrinol Diabetes. 2008;116(7):371\u201384. https:\/\/doi.org\/10.1055\/s-2008-1076714.","journal-title":"Exp Clin Endocrinol Diabetes"},{"issue":"1","key":"7712_CR80","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1186\/s13287-019-1496-2","volume":"11","author":"S Queckborner","year":"2020","unstructured":"Queckborner S, Syk Lundberg E, Gemzell-Danielsson K, Davies LC. Endometrial stromal cells exhibit a distinct phenotypic and immunomodulatory profile. Stem Cell Res Ther. 2020;11(1):15. https:\/\/doi.org\/10.1186\/s13287-019-1496-2.","journal-title":"Stem Cell Res Ther"},{"key":"7712_CR81","doi-asserted-by":"publisher","first-page":"276","DOI":"10.1016\/j.theriogenology.2016.12.012","volume":"90","author":"T Ntallaris","year":"2017","unstructured":"Ntallaris T, Humblot P, Bage R, Sjunnesson Y, Dupont J, Berglund B. Effect of energy balance profiles on metabolic and reproductive response in Holstein and Swedish red cows. Theriogenology. 2017;90:276\u201383. https:\/\/doi.org\/10.1016\/j.theriogenology.2016.12.012.","journal-title":"Theriogenology"},{"issue":"8","key":"7712_CR82","doi-asserted-by":"publisher","first-page":"1516","DOI":"10.1016\/j.theriogenology.2005.08.021","volume":"65","author":"IM Sheldon","year":"2006","unstructured":"Sheldon IM, Lewis GS, LeBlanc S, Gilbert RO. Defining postpartum uterine disease in cattle. Theriogenology. 2006;65(8):1516\u201330. https:\/\/doi.org\/10.1016\/j.theriogenology.2005.08.021.","journal-title":"Theriogenology"},{"issue":"1\u20132","key":"7712_CR83","doi-asserted-by":"publisher","first-page":"9","DOI":"10.1016\/j.theriogenology.2003.03.001","volume":"62","author":"R Kasimanickam","year":"2004","unstructured":"Kasimanickam R, Duffield TF, Foster RA, Gartley CJ, Leslie KE, Walton JS, et al. Endometrial cytology and ultrasonography for the detection of subclinical endometritis in postpartum dairy cows. Theriogenology. 2004;62(1\u20132):9\u201323. https:\/\/doi.org\/10.1016\/j.theriogenology.2003.03.001.","journal-title":"Theriogenology"},{"key":"7712_CR84","unstructured":"Johnson S, Funston R, Hall J, Lamb G, Lauderdale J, Patterson D, Perry G: Protocols for synchronization of estrus and ovulation. Proceedings Applied Reproductive Strategies in Beef Cattle San Antonio, TX 2010."},{"issue":"1","key":"7712_CR85","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1186\/1471-2121-11-95","volume":"11","author":"C Bevilacqua","year":"2010","unstructured":"Bevilacqua C, Makhzami S, Helbling J-C, Defrenaix P, Martin P. Maintaining RNA integrity in a homogeneous population of mammary epithelial cells isolated by laser capture microdissection. BMC Cell Biol. 2010;11(1):95. https:\/\/doi.org\/10.1186\/1471-2121-11-95.","journal-title":"BMC Cell Biol"},{"key":"7712_CR86","doi-asserted-by":"publisher","first-page":"1070","DOI":"10.12688\/f1000research.7035.1","volume":"4","author":"MI Love","year":"2015","unstructured":"Love MI, Anders S, Kim V, Huber W. RNA-Seq workflow: gene-level exploratory analysis and differential expression. F1000Res. 2015;4:1070.","journal-title":"F1000Res"},{"issue":"4","key":"7712_CR87","doi-asserted-by":"publisher","first-page":"417","DOI":"10.1038\/nmeth.4197","volume":"14","author":"R Patro","year":"2017","unstructured":"Patro R, Duggal G, Love MI, Irizarry RA, Kingsford C. Salmon provides fast and bias-aware quantification of transcript expression. Nat Methods. 2017;14(4):417\u20139. https:\/\/doi.org\/10.1038\/nmeth.4197.","journal-title":"Nat Methods"},{"key":"7712_CR88","doi-asserted-by":"publisher","first-page":"1521","DOI":"10.12688\/f1000research.7563.1","volume":"4","author":"C Soneson","year":"2015","unstructured":"Soneson C, Love MI, Robinson MD. Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences. F1000Res. 2015;4:1521.","journal-title":"F1000Res"},{"issue":"12","key":"7712_CR89","doi-asserted-by":"publisher","first-page":"550","DOI":"10.1186\/s13059-014-0550-8","volume":"15","author":"MI Love","year":"2014","unstructured":"Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 2014;15(12):550. https:\/\/doi.org\/10.1186\/s13059-014-0550-8.","journal-title":"Genome Biol"},{"issue":"7","key":"7712_CR90","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0021800","volume":"6","author":"F Supek","year":"2011","unstructured":"Supek F, Bosnjak M, Skunca N, Smuc T. REVIGO summarizes and visualizes long lists of gene ontology terms. PLoS One. 2011;6(7):e21800. https:\/\/doi.org\/10.1371\/journal.pone.0021800.","journal-title":"PLoS One"},{"issue":"1","key":"7712_CR91","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1093\/nar\/30.1.207","volume":"30","author":"R Edgar","year":"2002","unstructured":"Edgar R, Domrachev M, Lash AE. Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 2002;30(1):207\u201310. https:\/\/doi.org\/10.1093\/nar\/30.1.207.","journal-title":"Nucleic Acids Res"}],"container-title":["BMC Genomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12864-021-07712-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1186\/s12864-021-07712-0\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12864-021-07712-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,6,17]],"date-time":"2021-06-17T23:10:33Z","timestamp":1623971433000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcgenomics.biomedcentral.com\/articles\/10.1186\/s12864-021-07712-0"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2021,6,18]]},"references-count":91,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2021,12]]}},"alternative-id":["7712"],"URL":"https:\/\/doi.org\/10.1186\/s12864-021-07712-0","relation":{},"ISSN":["1471-2164"],"issn-type":[{"value":"1471-2164","type":"electronic"}],"subject":[],"published":{"date-parts":[[2021,6,18]]},"assertion":[{"value":"17 June 2020","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"11 April 2021","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"18 June 2021","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"All experimental protocols were approved by the Uppsala Animal Experiment Ethics Board (application C329\/12, PROLIFIC)(Uppsala University, Sweden) and were carried out in accordance with the terms of the Swedish Animal Welfare Act. After the study was completed, all cows were kept alive under normal husbandry conditions.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare that they have no competing interests.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"451"}}