{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,28]],"date-time":"2026-09-28T02:56:13Z","timestamp":1790564173141,"version":"4.1.0"},"reference-count":44,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2016,11,16]],"date-time":"2016-11-16T00:00:00Z","timestamp":1479254400000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2016,11,16]],"date-time":"2016-11-16T00:00:00Z","timestamp":1479254400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000038","name":"U.S. Food and Drug Administration","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000038","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Microbiol"],"published-print":{"date-parts":[[2016,12]]},"DOI":"10.1186\/s12866-016-0894-1","type":"journal-article","created":{"date-parts":[[2016,11,16]],"date-time":"2016-11-16T14:55:28Z","timestamp":1479308128000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":150,"title":["Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak"],"prefix":"10.1186","volume":"16","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6425-7943","authenticated-orcid":false,"given":"Andrea","family":"Ottesen","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Padmini","family":"Ramachandran","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Elizabeth","family":"Reed","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"James R.","family":"White","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nur","family":"Hasan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Poorani","family":"Subramanian","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gina","family":"Ryan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Karen","family":"Jarvis","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Christopher","family":"Grim","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ninalynn","family":"Daquiqan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Darcy","family":"Hanes","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marc","family":"Allard","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rita","family":"Colwell","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eric","family":"Brown","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yi","family":"Chen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2016,11,16]]},"reference":[{"issue":"1","key":"894_CR1","doi-asserted-by":"publisher","first-page":"9","DOI":"10.1016\/S1090-0233(97)80005-6","volume":"153","author":"JC Low","year":"1997","unstructured":"Low JC, Donachie W. A Review of Listeria monocytogenes and Listeriosis. Vet J. 1997;153(1):9\u201329.","journal-title":"Vet J"},{"issue":"4","key":"894_CR2","doi-asserted-by":"publisher","first-page":"407","DOI":"10.1002\/path.1700290409","volume":"29","author":"EGD Murray","year":"1926","unstructured":"Murray EGD, Webb RA, Swann MBR. A disease of rabbits characterised by a large mononuclear leucocytosis, caused by a hitherto undescribed bacillus Bacterium monocytogenes (n.sp.). J Pathol Bacteriol. 1926;29(4):407\u201339.","journal-title":"J Pathol Bacteriol"},{"issue":"8724","key":"894_CR3","doi-asserted-by":"publisher","first-page":"1171","DOI":"10.1016\/0140-6736(90)92778-G","volume":"336","author":"D Jones","year":"1990","unstructured":"Jones D. Foodborne listeriosis. Lancet. 1990;336(8724):1171\u20134.","journal-title":"Lancet"},{"issue":"4","key":"894_CR4","doi-asserted-by":"publisher","first-page":"203","DOI":"10.1056\/NEJM198301273080407","volume":"308","author":"WF Schlech III","year":"1983","unstructured":"Schlech III WF, Lavigne PM, Bortolussi RA, Allen AC, Haldane EV, Wort AJ, Hightower AW, Johnson SE, King SH, Nicholls ES. Epidemic listeriosis\u2014evidence for transmission by food. N Engl J Med. 1983;308(4):203\u20136.","journal-title":"N Engl J Med"},{"issue":"3","key":"894_CR5","doi-asserted-by":"publisher","first-page":"339","DOI":"10.3109\/00365548909035707","volume":"21","author":"J Junttila","year":"1989","unstructured":"Junttila J, Brander M. Listeria monocytogenes septicemia associated with consumption of salted mushrooms. Scand J Infect Dis. 1989;21(3):339\u201342.","journal-title":"Scand J Infect Dis"},{"key":"894_CR6","doi-asserted-by":"publisher","first-page":"6258","DOI":"10.1128\/AEM.01532-16","volume":"82","author":"Y Chen","year":"2016","unstructured":"Chen Y, Gonzalez-Escalona N, Hammack TS, Allard M, Strain EA, Brown EW. Core genome multilocus sequence typing for the identification of globally distributed clonal groups and differentiation of outbreak strains of Listeria monocytogenes. Appl Environ Microbiol. 2016;82:6258\u201372.","journal-title":"Appl Environ Microbiol"},{"key":"894_CR7","unstructured":"Multistate outbreak of listeriosis linked to Roos foods dairy products (Final Update). [\n                    http:\/\/www.cdc.gov\/listeria\/outbreaks\/cheese-02-14\n                    \n                  ]. Accessed 14 Nov 2016."},{"issue":"10","key":"894_CR8","first-page":"282","volume":"64","author":"BR Jackson","year":"2015","unstructured":"Jackson BR, Salter M, Tarr C, Conrad A, Harvey E, Steinbock L, Saupe A, Sorenson A, Katz L, Stroika S, et al. Notes from the field: listeriosis associated with stone fruit-United States, 2014. Morb Mortal Wkly Rep. 2015;64(10):282\u20133.","journal-title":"Morb Mortal Wkly Rep"},{"key":"894_CR9","unstructured":"Multistate outbreak of listeriosis linked to Blue Bell creameries products (Final Update). [\n                    http:\/\/www.cdc.gov\/listeria\/outbreaks\/ice-cream-03-15\n                    \n                  ]. Accessed 14 Nov 2016."},{"issue":"10","key":"894_CR10","doi-asserted-by":"publisher","first-page":"944","DOI":"10.1056\/NEJMoa1215837","volume":"369","author":"JT McCollum","year":"2013","unstructured":"McCollum JT, Cronquist AB, Silk BJ, Jackson KA, O\u2019Connor KA, Cosgrove S, Gossack JP, Parachini SS, Jain NS, Ettestad P, et al. Multistate outbreak of listeriosis associated with cantaloupe. N Engl J Med. 2013;369(10):944\u201353.","journal-title":"N Engl J Med"},{"key":"894_CR11","unstructured":"Multistate outbreak of listeriosis linked to commercially produced, prepackaged caramel apples made from Bidart Bros. apples (Final Update). [\n                    http:\/\/www.cdc.gov\/listeria\/outbreaks\/caramel-apples-12-14\n                    \n                  ]. Accessed 14 Nov 2016."},{"key":"894_CR12","doi-asserted-by":"crossref","first-page":"1828","DOI":"10.4315\/0362-028X.JFP-16-208","volume":"79","author":"Y Chen","year":"2016","unstructured":"Chen Y, Burall L, Macarisin D, Pouillot R, Strain E, De Jesus A, Laasri AM, Wang H, Ali A, Tatavarthy A, et al. Prevalence and level of Listeria monocytogenes in ice cream linked to a listeriosis outbreak in the United States. J Food Prot. 2016;79:1828\u201332. Accepted.","journal-title":"J Food Prot"},{"key":"894_CR13","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1016\/j.ijfoodmicro.2016.09.021","volume":"241","author":"Y Chen","year":"2017","unstructured":"Chen Y, Pouillot R, Burall LS, Strain EA, Van Doren JM, De Jesus AJ, Laasri A, Wang H, Ali L, Tatavarthy A. Comparative evaluation of direct plating and most probable number for enumeration of low levels of Listeria monocytogenes in naturally contaminated ice cream products. Int J Food Microbiol. 2017;241:15\u201322.","journal-title":"Int J Food Microbiol"},{"key":"894_CR14","first-page":"764","volume":"7","author":"Y Chen","year":"2016","unstructured":"Chen Y, Allard E, Wooten A, Hur M, Sheth I, Lassri A, Hammack TS, Macarisin D. Recovery and growth potential of Listeria monocytogenes in temperature abused milkshakes prepared from naturally contaminated ice cream linked to a listeriosis outbreak. Front Microbiol. 2016;7:764.","journal-title":"Front Microbiol"},{"key":"894_CR15","unstructured":"Food and Drug Administration Bacteriological Analytical Manual Chapter 10, Detection and enumeration of Listeria monocytogenes in foods. \n                    http:\/\/www.fda.gov\/Food\/FoodScienceResearch\/LaboratoryMethods\/ucm071400.htm\n                    \n                  . Accessed 14 Nov 2016."},{"key":"894_CR16","volume-title":"ISO 11290\u20131 Microbiology of Food and Animal Feeding Stuffs - Horizontal Method for Detection and Enumeration of Listeria Monocytogenes - Part 1: Detection Method","author":"Standardisation IOf","year":"1996","unstructured":"Standardisation IOf. ISO 11290\u20131 Microbiology of Food and Animal Feeding Stuffs - Horizontal Method for Detection and Enumeration of Listeria Monocytogenes - Part 1: Detection Method. 1996."},{"key":"894_CR17","unstructured":"Laboratory Guidebook . Isolation and Identification of Listeria monocytogenes from Red Meat, Poultry and Egg Products, and Environmental Samples. [\n                    http:\/\/www.fsis.usda.gov\/wps\/wcm\/connect\/1710bee8-76b9-4e6c-92fc-fdc290dbfa92\/MLG-8.pdf?MOD=AJPERES\n                    \n                  ]. Accessed 14 Nov 2016."},{"issue":"3","key":"894_CR18","doi-asserted-by":"publisher","first-page":"e90549","DOI":"10.1371\/journal.pone.0090549","volume":"9","author":"KM Goh","year":"2014","unstructured":"Goh KM, Gan HM, Chan K-G, Chan GF, Shahar S, Chong CS, Kahar UM, Chai KP. Analysis of Anoxybacillus genomes from the aspects of lifestyle adaptations, prophage diversity, and carbohydrate metabolism. PLoS One. 2014;9(3):e90549.","journal-title":"PLoS One"},{"issue":"4","key":"894_CR19","doi-asserted-by":"publisher","first-page":"357","DOI":"10.1007\/s12088-015-0538-4","volume":"55","author":"V Dwivedi","year":"2015","unstructured":"Dwivedi V, Kumari K, Gupta SK, Kumari R, Tripathi C, Lata P, Niharika N, Singh AK, Kumar R, Nigam A, et al. Thermus parvatiensis RLT sp. nov., isolated from a hot water spring, located atop the Himalayan ranges at Manikaran, India. Indian J Microbiol. 2015;55(4):357\u201365.","journal-title":"Indian J Microbiol"},{"issue":"20","key":"894_CR20","doi-asserted-by":"publisher","first-page":"5499","DOI":"10.1128\/JB.00662-10","volume":"192","author":"N Ohtani","year":"2010","unstructured":"Ohtani N, Tomita M, Itaya M. An extreme thermophile, thermus thermophilus, is a polyploid bacterium. J Bacteriol. 2010;192(20):5499\u2013505.","journal-title":"J Bacteriol"},{"issue":"1","key":"894_CR21","doi-asserted-by":"publisher","first-page":"378","DOI":"10.1186\/1756-0500-5-378","volume":"5","author":"JB Pettengill","year":"2012","unstructured":"Pettengill JB, McAvoy E, White JR, Allard M, Brown E, Ottesen A. Using metagenomic analyses to estimate the consequences of enrichment bias for pathogen detection. BMC Res Notes. 2012;5(1):378.","journal-title":"BMC Res Notes"},{"issue":"13","key":"894_CR22","doi-asserted-by":"publisher","first-page":"3842","DOI":"10.1128\/AEM.00835-14","volume":"80","author":"S Allard","year":"2014","unstructured":"Allard S, Enurah A, Strain E, Millner P, Rideout SL, Brown EW, Zheng J. In situ evaluation of Paenibacillus alvei in reducing carriage of Salmonella enterica serovar Newport on whole tomato plants. Appl Environ Microbiol. 2014;80(13):3842\u20139.","journal-title":"Appl Environ Microbiol"},{"key":"894_CR23","first-page":"5","volume":"1","author":"Y Luo","year":"2013","unstructured":"Luo Y, Wang C, Allard S, Strain E, Allard MW, Brown EW, Zheng J. Draft genome sequences of Paenibacillus alvei A6-6i and TS-15. Genome Announc. 2013;1:5. e00673-00613.","journal-title":"Genome Announc"},{"issue":"9","key":"894_CR24","doi-asserted-by":"publisher","first-page":"e73079","DOI":"10.1371\/journal.pone.0073079","volume":"8","author":"AR Ottesen","year":"2013","unstructured":"Ottesen AR, Gonzalez A, Bell R, Arce C, Rideout S, Allard M, Evans P, Strain E, Musser S, Knight R, et al. Co-enriching microflora associated with culture based methods to detect salmonella from tomato phyllosphere. PLoS One. 2013;8(9):e73079.","journal-title":"PLoS One"},{"issue":"1","key":"894_CR25","doi-asserted-by":"publisher","first-page":"160","DOI":"10.1186\/s12866-015-0497-2","volume":"15","author":"KG Jarvis","year":"2015","unstructured":"Jarvis KG, White JR, Grim CJ, Ewing L, Ottesen AR, Beaubrun JJ, Pettengill JB, Brown E, Hanes DE. Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing. BMC Microbiol. 2015;15(1):160.","journal-title":"BMC Microbiol"},{"issue":"1","key":"894_CR26","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1016\/S0168-1605(98)00120-2","volume":"44","author":"TP Robinson","year":"1998","unstructured":"Robinson TP, Ocio MJ, Kaloti A, Mackey BM. The effect of the growth environment on the lag phase of Listeria monocytogenes. Int J Food Microbiol. 1998;44(1):83\u201392.","journal-title":"Int J Food Microbiol"},{"issue":"2\u20133","key":"894_CR27","doi-asserted-by":"publisher","first-page":"291","DOI":"10.1016\/S0168-1605(01)00662-6","volume":"73","author":"RC Whiting","year":"2002","unstructured":"Whiting RC, Bagi LK. Modeling the lag phase of Listeria monocytogenes. Int J Food Microbiol. 2002;73(2\u20133):291\u20135.","journal-title":"Int J Food Microbiol"},{"issue":"1\u20133","key":"894_CR28","doi-asserted-by":"publisher","first-page":"77","DOI":"10.1016\/j.ijfoodmicro.2004.10.021","volume":"100","author":"ML Delignette-Muller","year":"2005","unstructured":"Delignette-Muller ML, Baty F, Cornu M, Bergis H. Modelling the effect of a temperature shift on the lag phase duration of Listeria monocytogenes. Int J Food Microbiol. 2005;100(1\u20133):77\u201384.","journal-title":"Int J Food Microbiol"},{"issue":"1\u20133","key":"894_CR29","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1016\/j.ijfoodmicro.2004.10.032","volume":"100","author":"K Francois","year":"2005","unstructured":"Francois K, Devlieghere F, Smet K, Standaert AR, Geeraerd AH, Van Impe JF, Debevere J. Modelling the individual cell lag phase: effect of temperature and pH on the individual cell lag distribution of Listeria monocytogenes. Int J Food Microbiol. 2005;100(1\u20133):41\u201353.","journal-title":"Int J Food Microbiol"},{"issue":"5740","key":"894_CR30","doi-asserted-by":"publisher","first-page":"1508","DOI":"10.1126\/science.1111771","volume":"309","author":"HF Noller","year":"2005","unstructured":"Noller HF. RNA structure: reading the ribosome. Science. 2005;309(5740):1508\u201314.","journal-title":"Science"},{"issue":"47","key":"894_CR31","doi-asserted-by":"publisher","first-page":"19220","DOI":"10.1073\/pnas.1213609109","volume":"109","author":"K Kitahara","year":"2012","unstructured":"Kitahara K, Yasutake Y, Miyazaki K. Mutational robustness of 16S ribosomal RNA, shown by experimental horizontal gene transfer in Escherichia coli. Proc Natl Acad Sci. 2012;109(47):19220\u20135.","journal-title":"Proc Natl Acad Sci"},{"issue":"10","key":"894_CR32","doi-asserted-by":"publisher","first-page":"4567","DOI":"10.1073\/pnas.0912305107","volume":"107","author":"B Roy-Chaudhuri","year":"2010","unstructured":"Roy-Chaudhuri B, Kirthi N, Culver GM. Appropriate maturation and folding of 16S rRNA during 30S subunit biogenesis are critical for translational fidelity. Proc Natl Acad Sci. 2010;107(10):4567\u201372.","journal-title":"Proc Natl Acad Sci"},{"issue":"21","key":"894_CR33","doi-asserted-by":"publisher","first-page":"2957","DOI":"10.1093\/bioinformatics\/btr507","volume":"27","author":"T Magoc","year":"2011","unstructured":"Magoc T, Salzberg SL. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics (Oxford, England). 2011;27(21):2957\u201363.","journal-title":"Bioinformatics (Oxford, England)"},{"issue":"15","key":"894_CR34","doi-asserted-by":"publisher","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","volume":"30","author":"AM Bolger","year":"2014","unstructured":"Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30(15):2114\u201320.","journal-title":"Bioinformatics"},{"key":"894_CR35","first-page":"Unit 10 17","volume":"Chapter 10","author":"J Kuczynski","year":"2011","unstructured":"Kuczynski J, Stombaugh J, Walters WA, Gonzalez A, Caporaso JG, Knight R. Using QIIME to analyze 16S rRNA gene sequences from microbial communities. Curr Protoc Bioinformatics. 2011;Chapter 10:Unit 10 17.","journal-title":"Curr Protoc Bioinformatics"},{"key":"894_CR36","doi-asserted-by":"publisher","first-page":"335","DOI":"10.1038\/nmeth.f.303","volume":"7","author":"JG Caporaso","year":"2010","unstructured":"Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7:335\u20136.","journal-title":"Nat Methods"},{"key":"894_CR37","doi-asserted-by":"publisher","first-page":"2194","DOI":"10.1093\/bioinformatics\/btr381","volume":"27","author":"RC Edgar","year":"2011","unstructured":"Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics. 2011;27:2194\u2013200.","journal-title":"Bioinformatics"},{"issue":"5848","key":"894_CR38","doi-asserted-by":"publisher","first-page":"283","DOI":"10.1126\/science.1146498","volume":"318","author":"DL Cox-Foster","year":"2007","unstructured":"Cox-Foster DL, Conlan S, Holmes EC, Palacios G, Evans JD, Moran NA, Quan P-L, Briese T, Hornig M, Geiser DM, et al. A metagenomic survey of microbes in honey bee colony collapse disorder. Science. 2007;318(5848):283\u20137.","journal-title":"Science"},{"issue":"3","key":"894_CR39","doi-asserted-by":"publisher","first-page":"610","DOI":"10.1038\/ismej.2011.139","volume":"6","author":"D McDonald","year":"2012","unstructured":"McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, Andersen GL, Knight R, Hugenholtz P. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J. 2012;6(3):610\u20138.","journal-title":"ISME J"},{"issue":"5","key":"894_CR40","doi-asserted-by":"publisher","first-page":"1792","DOI":"10.1093\/nar\/gkh340","volume":"32","author":"RC Edgar","year":"2004","unstructured":"Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004;32(5):1792\u20137.","journal-title":"Nucleic Acids Res"},{"key":"894_CR41","doi-asserted-by":"publisher","first-page":"12","DOI":"10.1111\/2041-210X.12114","volume":"4","author":"AM Eren","year":"2013","unstructured":"Eren AM, Maignien L, Sul WJ, Murphy LG, Grim SL, Morrison HG, Sogin ML. Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data. Methods Ecol Evol. 2013;4:12.","journal-title":"Methods Ecol Evol"},{"issue":"4","key":"894_CR42","doi-asserted-by":"publisher","first-page":"357","DOI":"10.1038\/nmeth.1923","volume":"9","author":"B Langmead","year":"2012","unstructured":"Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012;9(4):357\u20139.","journal-title":"Nat Methods"},{"issue":"5","key":"894_CR43","doi-asserted-by":"publisher","first-page":"e97699","DOI":"10.1371\/journal.pone.0097699","volume":"9","author":"NA Hasan","year":"2014","unstructured":"Hasan NA, Young BA, Minard-Smith AT, Saeed K, Li H, Heizer EM, McMillan NJ, Isom R, Abdullah AS, Bornman DM, et al. Microbial community profiling of human saliva using shotgun metagenomic sequencing. PLoS One. 2014;9(5):e97699.","journal-title":"PLoS One"},{"issue":"6200","key":"894_CR44","doi-asserted-by":"publisher","first-page":"1048","DOI":"10.1126\/science.1254529","volume":"345","author":"S Lax","year":"2014","unstructured":"Lax S, Smith DP, Hampton-Marcell J, Owens SM, Handley KM, Scott NM, Gibbons SM, Larsen P, Shogan BD, Weiss S. Longitudinal analysis of microbial interaction between humans and the indoor environment. Science. 2014;345(6200):1048\u201352.","journal-title":"Science"}],"container-title":["BMC Microbiology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12866-016-0894-1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s12866-016-0894-1\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12866-016-0894-1.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,14]],"date-time":"2020-05-14T14:25:23Z","timestamp":1589466323000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcmicrobiol.biomedcentral.com\/articles\/10.1186\/s12866-016-0894-1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,11,16]]},"references-count":44,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2016,12]]}},"alternative-id":["894"],"URL":"https:\/\/doi.org\/10.1186\/s12866-016-0894-1","relation":{},"ISSN":["1471-2180"],"issn-type":[{"value":"1471-2180","type":"electronic"}],"subject":[],"published":{"date-parts":[[2016,11,16]]},"assertion":[{"value":"11 September 2016","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"11 November 2016","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"16 November 2016","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"275"}}