{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,27]],"date-time":"2026-02-27T04:12:20Z","timestamp":1772165540547,"version":"3.50.1"},"reference-count":67,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2025,2,3]],"date-time":"2025-02-03T00:00:00Z","timestamp":1738540800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"},{"start":{"date-parts":[[2025,2,3]],"date-time":"2025-02-03T00:00:00Z","timestamp":1738540800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Microbiol"],"DOI":"10.1186\/s12866-024-03650-5","type":"journal-article","created":{"date-parts":[[2025,2,3]],"date-time":"2025-02-03T07:03:01Z","timestamp":1738566181000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["A novel virulent core genome multilocus sequence type CT 11424 of Listeria monocytogenes isolate causing stillbirth in Bangladesh"],"prefix":"10.1186","volume":"25","author":[{"given":"Muntasir","family":"Alam","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Md Saiful","family":"Islam","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"M. Ishrat","family":"Jahan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Arpita Shyama","family":"Deb","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Afruna","family":"Rahman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zahidul","family":"Islam","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Atique Iqbal","family":"Chowdhury","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kazi Munisul","family":"Islam","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mohammad Zahid","family":"Hossain","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Dilruba","family":"Ahmed","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shams El","family":"Arifeen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Emily S.","family":"Gurley","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mustafizur","family":"Rahman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2025,2,3]]},"reference":[{"issue":"3","key":"3650_CR1","doi-asserted-by":"publisher","first-page":"395","DOI":"10.1586\/14787210.2015.1003809","volume":"13","author":"F Allerberger","year":"2015","unstructured":"Allerberger F, Huhulescu S. Pregnancy related listeriosis: treatment and control. Expert Rev Anti Infect Ther. 2015;13(3):395\u2013403. https:\/\/doi.org\/10.1586\/14787210.2015.1003809.","journal-title":"Expert Rev Anti Infect Ther"},{"issue":"5","key":"3650_CR2","doi-asserted-by":"publisher","first-page":"703","DOI":"10.1111\/j.1462-5822.2009.01294.x","volume":"11","author":"SC Corr","year":"2009","unstructured":"Corr SC, O\u2019Neill LAJ. Listeria monocytogenes infection in the face of innate immunity. Cell Microbiol. 2009;11(5):703\u20139. https:\/\/doi.org\/10.1111\/j.1462-5822.2009.01294.x.","journal-title":"Cell Microbiol"},{"issue":"5","key":"3650_CR3","doi-asserted-by":"publisher","first-page":"510","DOI":"10.1016\/S1473-3099(16)30521-7","volume":"17","author":"C Charlier","year":"2017","unstructured":"Charlier C, Perrodeau \u00c9, Leclercq A, Cazenave B, Pilmis B, Henry B, et al. Clinical features and prognostic factors of listeriosis: the MONALISA national prospective cohort study. Lancet Infect Dis. 2017;17(5):510\u20139. https:\/\/doi.org\/10.1016\/S1473-3099(16)30521-7.","journal-title":"Lancet Infect Dis"},{"issue":"4","key":"3650_CR4","doi-asserted-by":"publisher","first-page":"e259938","DOI":"10.1136\/bcr-2024-259938","volume":"17","author":"NI Basri","year":"2024","unstructured":"Basri NI. Listeriosis in pregnancy: a challenge in diagnosis. BMJ Case Rep. 2024;17(4):e259938. https:\/\/doi.org\/10.1136\/bcr-2024-259938.","journal-title":"BMJ Case Rep"},{"key":"3650_CR5","doi-asserted-by":"publisher","unstructured":"Grigore-Gurgu L, Bucur FI, Mihalache OA, Nicolau AI. Comprehensive Review on the Biocontrol of Listeria monocytogenes in Food products. Foods (Basel Switzerland). 2024;13(5). https:\/\/doi.org\/10.3390\/foods13050734.","DOI":"10.3390\/foods13050734"},{"key":"3650_CR6","doi-asserted-by":"publisher","unstructured":"Schoder D, Guldimann C, M\u00e4rtlbauer E. Asymptomatic carriage of Listeria monocytogenes by animals and humans and its impact on the Food Chain. Foods (Basel Switzerland). 2022;11(21). https:\/\/doi.org\/10.3390\/foods11213472.","DOI":"10.3390\/foods11213472"},{"key":"3650_CR7","doi-asserted-by":"publisher","unstructured":"Obaidat MM, Stringer AP. Prevalence, molecular characterization, and antimicrobial resistance profiles of Listeria monocytogenes, Salmonella enterica, and Escherichia coli O157:H7 on dairy cattle farms in Jordan. J Dairy Sci. 2019;102(10):8710\u201320. https:\/\/doi.org\/10.3168\/jds.2019-16461.","DOI":"10.3168\/jds.2019-16461"},{"issue":"5","key":"3650_CR8","doi-asserted-by":"publisher","first-page":"873","DOI":"10.1292\/jvms.53.873","volume":"53","author":"T Iida","year":"1991","unstructured":"Iida T, Kanzaki M, Maruyama T, Inoue S, Kaneuchi C. Prevalence of Listeria monocytogenes in intestinal contents of healthy animals in Japan. J Vet Med Sci. 1991;53(5):873\u20135. https:\/\/doi.org\/10.1292\/jvms.53.873.","journal-title":"J Vet Med Sci"},{"issue":"3","key":"3650_CR9","doi-asserted-by":"publisher","first-page":"883","DOI":"10.1111\/j.1365-2672.2007.03604.x.","volume":"104","author":"S Hellstr\u00f6m","year":"2008","unstructured":"Hellstr\u00f6m S, Kiviniemi K, Autio T, Korkeala H. Listeria monocytogenes is common in wild birds in Helsinki region and genotypes are frequently similar with those found along the food chain. J Appl Microbiol. 2008;104(3):883\u20138. https:\/\/doi.org\/10.1111\/j.1365-2672.2007.03604.x","journal-title":"J Appl Microbiol"},{"issue":"1","key":"3650_CR10","first-page":"26","volume":"108","author":"A Weber","year":"1995","unstructured":"Weber A, Potel J, Sch\u00e4fer-Schmidt R. The occurrence of Listeria monocytogenes in fecal samples of pigeons. Berl Munch Tierarztl Wochenschr. 1995;108(1):26\u20137.","journal-title":"Berl Munch Tierarztl Wochenschr"},{"issue":"6","key":"3650_CR11","doi-asserted-by":"publisher","first-page":"673","DOI":"10.1292\/jvms.62.673","volume":"62","author":"T Yoshida","year":"2000","unstructured":"Yoshida T, Sugimoto T, Sato M, Hirai K. Incidence of Listeria monocytogenes in wild animals in Japan. J Vet Med Sci. 2000;62(6):673\u20135. https:\/\/doi.org\/10.1292\/jvms.62.673.","journal-title":"J Vet Med Sci"},{"issue":"5","key":"3650_CR12","doi-asserted-by":"publisher","first-page":"420","DOI":"10.1111\/zph.12247","volume":"63","author":"L Pohjola","year":"2016","unstructured":"Pohjola L, Nyk\u00e4senoja S, Kivist\u00f6 R, Soveri T, Huovilainen A, H\u00e4nninen ML, et al. Zoonotic Public Health Hazards in Backyard Chickens. Zoonoses Public Health. 2016;63(5):420\u201330. https:\/\/doi.org\/10.1111\/zph.12247.","journal-title":"Zoonoses Public Health"},{"issue":"6","key":"3650_CR13","doi-asserted-by":"publisher","first-page":"1176","DOI":"10.4315\/0362-028x-68.6.1176","volume":"68","author":"KV Sy","year":"2005","unstructured":"Sy KV, Murray MB, Harrison MD, Beuchat LR. Evaluation of gaseous chlorine dioxide as a sanitizer for killing Salmonella, Escherichia coli O157:H7, Listeria monocytogenes, and yeasts and molds on fresh and fresh-cut produce. J Food Prot. 2005;68(6):1176\u201387. https:\/\/doi.org\/10.4315\/0362-028x-68.6.1176.","journal-title":"J Food Prot"},{"key":"3650_CR14","doi-asserted-by":"crossref","unstructured":"Zhu Q, Gooneratne R, Hussain MA. Listeria monocytogenes in Fresh Produce: Outbreaks, Prevalence and Contamination Levels. Foods (Basel, Switzerland). 2017;6(3).d10.3390\/foods6030021","DOI":"10.3390\/foods6030021"},{"issue":"2","key":"3650_CR15","doi-asserted-by":"publisher","first-page":"317","DOI":"10.1016\/j.ijfoodmicro.2010.10.001","volume":"144","author":"L Skalina","year":"2010","unstructured":"Skalina L, Nikolajeva V. Growth potential of Listeria monocytogenes strains in mixed ready-to-eat salads. Int J Food Microbiol. 2010;144(2):317\u201321. https:\/\/doi.org\/10.1016\/j.ijfoodmicro.2010.10.001.","journal-title":"Int J Food Microbiol"},{"key":"3650_CR16","doi-asserted-by":"publisher","first-page":"106706","DOI":"10.1016\/j.ultsonch.2023.106706","volume":"101","author":"W Hou","year":"2023","unstructured":"Hou W, Ma Y, Zhang C, Zhao W, Zhao S, Wang P, et al. Investigation on the inactivation effect and mechanism of Listeria monocytogenes in fresh-cut cucumber during storage by ultrasound combined with sodium hypochlorite. Ultrason Sonochem. 2023;101:106706. https:\/\/doi.org\/10.1016\/j.ultsonch.2023.106706.","journal-title":"Ultrason Sonochem"},{"issue":"1","key":"3650_CR17","doi-asserted-by":"publisher","first-page":"8","DOI":"10.1089\/fpd.2013.1578","volume":"11","author":"B Stessl","year":"2014","unstructured":"Stessl B, Fricker M, Fox E, Karpiskova R, Demnerova K, Jordan K, et al. Collaborative survey on the colonization of different types of cheese-processing facilities with Listeria monocytogenes. Foodborne Pathog Dis. 2014;11(1):8\u201314. https:\/\/doi.org\/10.1089\/fpd.2013.1578.","journal-title":"Foodborne Pathog Dis"},{"key":"3650_CR18","doi-asserted-by":"publisher","unstructured":"Osek J, Wieczorek K. Listeria monocytogenes-how this Pathogen uses its virulence mechanisms to infect the hosts. Pathog (Basel Switzerland). 2022;11(12). https:\/\/doi.org\/10.3390\/pathogens11121491.","DOI":"10.3390\/pathogens11121491"},{"issue":"5","key":"3650_CR19","doi-asserted-by":"publisher","first-page":"309","DOI":"10.1007\/s002849900315","volume":"36","author":"B Vines","year":"1998","unstructured":"Vines B, Swaminathan A. Identification and characterization of Nucleotide sequence differences in three virulence-Associated genes of Listeria monocytogenes strains representing clinically important serotypes. Curr Microbiol. 1998;36(5):309\u201318. https:\/\/doi.org\/10.1007\/s002849900315.","journal-title":"Curr Microbiol"},{"issue":"2","key":"3650_CR20","doi-asserted-by":"publisher","first-page":"79","DOI":"10.1016\/j.ijmm.2010.05.002","volume":"301","author":"RH Orsi","year":"2011","unstructured":"Orsi RH, den Bakker HC, Wiedmann M. Listeria monocytogenes lineages: Genomics, evolution, ecology, and phenotypic characteristics. Int J Med Microbiol. 2011;301(2):79\u201396. https:\/\/doi.org\/10.1016\/j.ijmm.2010.05.002.","journal-title":"Int J Med Microbiol"},{"issue":"6","key":"3650_CR21","doi-asserted-by":"publisher","first-page":"1110","DOI":"10.3201\/eid1706.101778","volume":"17","author":"V Chenal-Francisque","year":"2011","unstructured":"Chenal-Francisque V, Lopez J, Cantinelli T, Caro V, Tran C, Leclercq A, et al. Worldwide distribution of major clones of Listeria monocytogenes. Emerg Infect Dis. 2011;17(6):1110\u20132. https:\/\/doi.org\/10.3201\/eid1706.101778.","journal-title":"Emerg Infect Dis"},{"issue":"1","key":"3650_CR22","doi-asserted-by":"publisher","first-page":"469","DOI":"10.1186\/2193-1801-3-469","volume":"3","author":"R Noor","year":"2014","unstructured":"Noor R, Hasan MF, Rahman MM. Molecular characterization of the virulent microorganisms along with their drug-resistance traits associated with the export quality frozen shrimps in Bangladesh. Springerplus. 2014;3(1):469. https:\/\/doi.org\/10.1186\/2193-1801-3-469.","journal-title":"Springerplus"},{"key":"3650_CR23","doi-asserted-by":"publisher","unstructured":"Paul P, Faruque MR, Rahman MK, Das P, Chowdhury MYE. Study on bacterial pathogens through multiplex polymerase chain reaction system and their antimicrobial resistance pattern in goats presumed with fever and\/or diarrhea. Vet World. 2021;1080\u201392. https:\/\/doi.org\/10.14202\/vetworld.2021.1080-1092.","DOI":"10.14202\/vetworld.2021.1080-1092"},{"issue":"1","key":"3650_CR24","doi-asserted-by":"publisher","first-page":"7787","DOI":"10.1038\/s41598-023-34782-9","volume":"13","author":"N Nusrat","year":"2023","unstructured":"Nusrat N, Ahmad Zahra M, Ahmed A, Haque F. Assessment of potential pathogenic bacterial load and multidrug resistance in locally manufactured cosmetics commonly used in Dhaka metropolis. Sci Rep. 2023;13(1):7787. https:\/\/doi.org\/10.1038\/s41598-023-34782-9.","journal-title":"Sci Rep"},{"key":"3650_CR25","doi-asserted-by":"publisher","unstructured":"Nahid MA, Sadique T, Mazumder R, Abdullah A, Sami AB, Rahaman MA, et al. Listeria monocytogenes infection in a 56-year-old female cancer patient: a case report. JMM Case Rep. 2015;2(4). https:\/\/doi.org\/10.1099\/jmmcr.0.000076.","DOI":"10.1099\/jmmcr.0.000076"},{"key":"3650_CR26","doi-asserted-by":"publisher","unstructured":"Sultana N, Pervin M, Sultana S, Islam M, Mostaree M, Khan MAHNA. Pathological study and molecular detection of zoonotic diseases in small ruminants at slaughter houses in Mymensingh, Bangladesh. Vet World. 2022;2119\u201330. https:\/\/doi.org\/10.14202\/vetworld.2022.2119-2130.","DOI":"10.14202\/vetworld.2022.2119-2130"},{"issue":"Suppl 4","key":"3650_CR27","doi-asserted-by":"publisher","first-page":"S262","DOI":"10.1093\/cid\/ciz599","volume":"69","author":"NT Salzberg","year":"2019","unstructured":"Salzberg NT, Sivalogan K, Bassat Q, et al. Mortality surveillance methods to identify and Characterize Deaths in Child Health and Mortality Prevention Surveillance Network Sites. Clin Infect Dis. 2019;69(Suppl 4):S262\u201373. https:\/\/doi.org\/10.1093\/cid\/ciz599.","journal-title":"Clin Infect Dis"},{"issue":"9","key":"3650_CR28","doi-asserted-by":"publisher","first-page":"e1003814","DOI":"10.1371\/journal.pmed.1003814","volume":"18","author":"RF Breiman","year":"2021","unstructured":"Breiman RF, Blau DM, Mutevedzi P, et al. Postmortem investigations and identification of multiple causes of child deaths: an analysis of findings from the Child Health and Mortality Prevention Surveillance (CHAMPS) network. PLoS Med. 2021;18(9):e1003814. https:\/\/doi.org\/10.1371\/journal.pmed.1003814. Published 2021 Sep 30.","journal-title":"PLoS Med"},{"issue":"7","key":"3650_CR29","doi-asserted-by":"publisher","first-page":"e909","DOI":"10.1016\/S2214-109X(20)30205-9","volume":"8","author":"AW Taylor","year":"2020","unstructured":"Taylor AW, Blau DM, Bassat Q, et al. Initial findings from a novel population-based child mortality surveillance approach: a descriptive study. Lancet Glob Health. 2020;8(7):e909\u201319. https:\/\/doi.org\/10.1016\/S2214-109X(20)30205-9.","journal-title":"Lancet Glob Health"},{"key":"3650_CR30","unstructured":"CLSI. Performance Standards for Antimicrobial Susceptibility Testing, 33rd ed."},{"issue":"Suppl 4","key":"3650_CR31","doi-asserted-by":"publisher","first-page":"S311","DOI":"10.1093\/cid\/ciz571","volume":"69","author":"MH Diaz","year":"2019","unstructured":"Diaz MH, Waller JL, Theodore MJ, Patel N, Wolff BJ, Benitez AJ, et al. Development and Implementation of Multiplex TaqMan Array Cards for Specimen Testing at Child Health and Mortality Prevention Surveillance Site Laboratories. Clin Infect Dis. 2019;69(Suppl 4):S311\u201321. https:\/\/doi.org\/10.1093\/cid\/ciz571.","journal-title":"Clin Infect Dis"},{"key":"3650_CR32","doi-asserted-by":"publisher","unstructured":"Leggett RM, Ramirez-Gonzalez RH, Clavijo BJ, Waite D, Davey RP. Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics. Front Genet. 2013;4. https:\/\/doi.org\/10.3389\/fgene.2013.00288.","DOI":"10.3389\/fgene.2013.00288"},{"issue":"15","key":"3650_CR33","doi-asserted-by":"publisher","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","volume":"30","author":"AM Bolger","year":"2014","unstructured":"Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30(15):2114\u201320. https:\/\/doi.org\/10.1093\/bioinformatics\/btu170.","journal-title":"Bioinformatics"},{"issue":"5","key":"3650_CR34","doi-asserted-by":"publisher","first-page":"455","DOI":"10.1089\/cmb.2012.002.1","volume":"19","author":"A Bankevich","year":"2012","unstructured":"Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, et al. SPAdes: a New Genome Assembly Algorithm and its applications to single-cell sequencing. J Comput Biol. 2012;19(5):455\u201377. https:\/\/doi.org\/10.1089\/cmb.2012.002.1.","journal-title":"J Comput Biol"},{"issue":"15","key":"3650_CR35","doi-asserted-by":"publisher","first-page":"1968","DOI":"10.1093\/bioinformatics\/btp347","volume":"25","author":"S Assefa","year":"2009","unstructured":"Assefa S, Keane TM, Otto TD, Newbold C, Berriman M. ABACAS: algorithm-based automatic contiguation of assembled sequences. Bioinformatics. 2009;25(15):1968\u20139. https:\/\/doi.org\/10.1093\/bioinformatics\/btp347.","journal-title":"Bioinformatics"},{"issue":"8","key":"3650_CR36","doi-asserted-by":"publisher","first-page":"1072","DOI":"10.1093\/bioinformatics\/btt086","volume":"29","author":"A Gurevich","year":"2013","unstructured":"Gurevich A, Saveliev V, Vyahhi N, Tesler G. QUAST: quality assessment tool for genome assemblies. Bioinformatics. 2013;29(8):1072\u20135. https:\/\/doi.org\/10.1093\/bioinformatics\/btt086.","journal-title":"Bioinformatics"},{"issue":"14","key":"3650_CR37","doi-asserted-by":"publisher","first-page":"2068","DOI":"10.1093\/bioinformatics\/btu153","volume":"30","author":"T Seemann","year":"2014","unstructured":"Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014;30(14):2068\u20139. https:\/\/doi.org\/10.1093\/bioinformatics\/btu153.","journal-title":"Bioinformatics"},{"key":"3650_CR38","unstructured":"Public databases for molecular typing. and microbial genome diversity.https:\/\/pubmlst.org\/species-id.Accessed 12June 2023."},{"key":"3650_CR39","unstructured":"KmerFinder 3. 2.https:\/\/cge.food.dtu.dk\/services\/KmerFinder\/.Accessed 12June 2023."},{"key":"3650_CR40","unstructured":"Bacterial Isolate Genome Sequence Database. (BIGSdb).https:\/\/pubmlst.org\/software\/bigsdb\/.Accessed 12June 2023."},{"key":"3650_CR41","doi-asserted-by":"publisher","unstructured":"Schwengers O, Barth P, Falgenhauer L, Hain T, Chakraborty T, Goesmann A. Platon: identification and characterization of bacterial plasmid contigs in short-read draft assemblies exploiting protein sequence-based replicon distribution scores. Microb Genomics. 2020;6(10). https:\/\/doi.org\/10.1099\/mgen.0.000398.","DOI":"10.1099\/mgen.0.000398"},{"issue":"W1","key":"3650_CR42","doi-asserted-by":"publisher","first-page":"W16","DOI":"10.1093\/nar\/gkw387","volume":"44","author":"D Arndt","year":"2016","unstructured":"Arndt D, Grant JR, Marcu A, Sajed T, Pon A, Liang Y, et al. PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Res. 2016;44(W1):W16\u201321. https:\/\/doi.org\/10.1093\/nar\/gkw387.","journal-title":"Nucleic Acids Res"},{"issue":"W1","key":"3650_CR43","doi-asserted-by":"publisher","first-page":"W41","DOI":"10.1093\/nar\/gkw330","volume":"44","author":"D Veltri","year":"2016","unstructured":"Veltri D, Wight MM, Crouch JA. SimpleSynteny: a web-based tool for visualization of microsynteny across multiple species. Nucleic Acids Res. 2016;44(W1):W41\u20135. https:\/\/doi.org\/10.1093\/nar\/gkw330.","journal-title":"Nucleic Acids Res"},{"issue":"9","key":"3650_CR44","doi-asserted-by":"publisher","first-page":"1395","DOI":"10.1101\/gr.232397.117","volume":"28","author":"Z Zhou","year":"2018","unstructured":"Zhou Z, Alikhan NF, Sergeant MJ, Luhmann N, Vaz C, Francisco AP, et al. GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens. Genome Res. 2018;28(9):1395\u2013404. https:\/\/doi.org\/10.1101\/gr.232397.117.","journal-title":"Genome Res"},{"key":"3650_CR45","doi-asserted-by":"publisher","first-page":"e20","DOI":"10.7717\/peerj-cs.20","volume":"1","author":"S Davis","year":"2015","unstructured":"Davis S, Pettengill JB, Luo Y, Payne J, Shpuntoff A, Rand H, Strain E. CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data. PeerJ Comput Sci. 2015;1:e20. https:\/\/doi.org\/10.7717\/peerj-cs.20.","journal-title":"PeerJ Comput Sci"},{"key":"3650_CR46","doi-asserted-by":"publisher","unstructured":"Jana Trifinopoulos L-T, Nguyen. Arndt Von Haeseler, Bui Quang Minh, W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Res, 44, Issue W1, 8 July 2016, Pages W232\u2013W235, https:\/\/doi.org\/10.1093\/nar\/gkw256","DOI":"10.1093\/nar\/gkw256"},{"issue":"W1","key":"3650_CR47","doi-asserted-by":"publisher","first-page":"W293","DOI":"10.1093\/nar\/gkab301","volume":"49","author":"I Letunic","year":"2021","unstructured":"Letunic I, Bork P. Interactive tree of life (iTOL) v5: an online tool for phylogenetic tree display and annotation. Nucleic Acids Res. 2021;49(W1):W293\u20136. https:\/\/doi.org\/10.1093\/nar\/gkab301.","journal-title":"Nucleic Acids Res"},{"key":"3650_CR48","doi-asserted-by":"publisher","DOI":"10.3389\/fmolb.2023.1161486","author":"N Wiktorczyk-Kapischke","year":"2023","unstructured":"Wiktorczyk-Kapischke N, Skowron K, Wa\u0142ecka-Zacharska E. Genomic and pathogenicity islands of Listeria monocytogenes\u2014overview of selected aspects. Front Mol Biosci. 2023. https:\/\/doi.org\/10.3389\/fmolb.2023.1161486.","journal-title":"Front Mol Biosci"},{"issue":"11","key":"3650_CR49","doi-asserted-by":"publisher","first-page":"3629","DOI":"10.1128\/iai.57.11.3629-3636.1989","volume":"57","author":"P Cossart","year":"1989","unstructured":"Cossart P, Vicente MF, Mengaud J, Baquero F, Perez-Diaz JC, Berche P. Listeriolysin O is essential for virulence of Listeria monocytogenes: direct evidence obtained by gene complementation. Infect Immun. 1989;57(11):3629\u201336. https:\/\/doi.org\/10.1128\/iai.57.11.3629-3636.1989.","journal-title":"Infect Immun"},{"issue":"5","key":"3650_CR50","doi-asserted-by":"publisher","first-page":"408","DOI":"10.1016\/j.tim.2018.12.007","volume":"27","author":"R Drolia","year":"2019","unstructured":"Drolia R, Bhunia AK. Crossing the intestinal barrier via Listeria Adhesion Protein and internalin A. Trends Microbiol. 2019;27(5):408\u201325. https:\/\/doi.org\/10.1016\/j.tim.2018.12.007.","journal-title":"Trends Microbiol"},{"issue":"12","key":"3650_CR51","doi-asserted-by":"publisher","first-page":"5062","DOI":"10.1128\/iai.00516-10","volume":"78","author":"KM Burkholder","year":"2010","unstructured":"Burkholder KM, Bhunia AK. Listeria monocytogenes Uses Listeria Adhesion Protein (LAP) To Promote Bacterial Transepithelial Translocation and Induces Expression of LAP Receptor Hsp60. Infect Immun. 2010;78(12):5062\u201373. https:\/\/doi.org\/10.1128\/iai.00516-10.","journal-title":"Infect Immun"},{"key":"3650_CR52","doi-asserted-by":"publisher","unstructured":"Ling Z, Zhao D, Xie X, Yao H, Wang Y, Kong S, et al. inlF enhances Listeria monocytogenes early-stage infection by inhibiting the inflammatory response. Front Cell Infect Microbiol. 2022;11. https:\/\/doi.org\/10.3389\/fcimb.2021.748461.","DOI":"10.3389\/fcimb.2021.748461"},{"key":"3650_CR53","doi-asserted-by":"publisher","unstructured":"Travier L, Guadagnini S, Gouin E, Dufour A, Chenal-Francisque V, Cossart P et al. ActA Promotes Listeria monocytogenes Aggregation, Intestinal Colonization and Carriage. Monack DM, editor. PLoS Pathog. 2013;9(1):e1003131.https:\/\/doi.org\/10.1371\/journal.ppat.1003131","DOI":"10.1371\/journal.ppat.1003131"},{"issue":"6","key":"3650_CR54","doi-asserted-by":"publisher","first-page":"357","DOI":"10.1089\/fpd.2016.2248","volume":"14","author":"C Escolar","year":"2017","unstructured":"Escolar C, G\u00f3mez D, del Carmen Rota Garc\u00eda M, Conchello P, Herrera A. Antimicrobial Resistance profiles of Listeria monocytogenes and Listeria innocua isolated from ready-to-eat products of animal origin in Spain. Foodborne Pathog Dis. 2017;14(6):357\u201363. https:\/\/doi.org\/10.1089\/fpd.2016.2248.","journal-title":"Foodborne Pathog Dis"},{"key":"3650_CR55","doi-asserted-by":"publisher","unstructured":"Luque-Sastre L, Arroyo C, Fox EM, McMahon BJ, Bai L, Li F et al. Antimicrobial Resistance in Listeria Species. Aarestrup FM, Schwarz S, Shen J, Cavaco L, editors. Microbiol Spectr. 2018;6(4).https:\/\/doi.org\/10.1128\/microbiolspec.arba-0031-2017","DOI":"10.1128\/microbiolspec.arba-0031-2017"},{"issue":"4","key":"3650_CR56","first-page":"179","volume":"1","author":"V Janakiraman","year":"2008","unstructured":"Janakiraman V. Listeriosis in pregnancy: diagnosis, treatment, and prevention. Rev Obstet Gynecol. 2008;1(4):179\u201385.","journal-title":"Rev Obstet Gynecol"},{"issue":"12","key":"3650_CR57","doi-asserted-by":"publisher","first-page":"1007","DOI":"10.3390\/genes10121007","volume":"10","author":"P Matle","year":"2019","unstructured":"Matle P, Mbatha, Magwedere M. Genomic diversity of common sequence types of Listeria monocytogenes isolated from ready-to-eat products of animal origin in South Africa. Genes (Basel). 2019;10(12):1007. https:\/\/doi.org\/10.3390\/genes10121007.","journal-title":"Genes (Basel)"},{"key":"3650_CR58","doi-asserted-by":"publisher","unstructured":"Mafuna T, Matle I, Magwedere K, Pierneef RE, Reva ON. Comparative Genomics of Listeria Species Recovered from Meat and Food Processing Facilities. Denes TG, editor. Microbiol Spectr. 2022;10(5).https:\/\/doi.org\/10.1128\/spectrum.01189-22","DOI":"10.1128\/spectrum.01189-22"},{"key":"3650_CR59","unstructured":"Outbreaks. May. https:\/\/www.cdc.gov\/Listeria\/outbreaks\/index.html.Accessed 23 2024."},{"key":"3650_CR60","doi-asserted-by":"publisher","unstructured":"Mahtab S, Madhi SA, Baillie VL, Els T, Thwala BN, Onyango D et al. Causes of death identified in neonates enrolled through Child Health and Mortality Prevention Surveillance (CHAMPS), December 2016 \u2013December 2021. Tappis H, editor. PLOS Glob Public Heal. 2023;3(3):e0001612.https:\/\/doi.org\/10.1371\/journal.pgph.0001612","DOI":"10.1371\/journal.pgph.0001612"},{"key":"3650_CR61","doi-asserted-by":"publisher","unstructured":"Agbayani G, Wachholz K, Murphy SP, Sad S, Krishnan L. Type I interferons differentially modulate maternal host immunity to infection by Listeria monocytogenes and Salmonella enterica serovar typhimurium during pregnancy. Am J Reprod Immunol. 2019;81(1). https:\/\/doi.org\/10.1111\/aji.13068.","DOI":"10.1111\/aji.13068"},{"key":"3650_CR62","doi-asserted-by":"publisher","first-page":"20","DOI":"10.1016\/j.ijfoodmicro.2014.10.016","volume":"209","author":"D Rodr\u00edguez-L\u00e1zaro","year":"2015","unstructured":"Rodr\u00edguez-L\u00e1zaro D, Ariza-Miguel J, Diez\u2013Valcarce M, Stessl B, Beutlich J, Fern\u00e1ndez-Natal I, et al. Identification and molecular characterization of pathogenic bacteria in foods confiscated from non-EU flights passengers at one Spanish airport. Int J Food Microbiol. 2015;209:20\u20135. https:\/\/doi.org\/10.1016\/j.ijfoodmicro.2014.10.016.","journal-title":"Int J Food Microbiol"},{"key":"3650_CR63","doi-asserted-by":"publisher","unstructured":"Chen M, Cheng J, Wu Q, Zhang J, Chen Y, Xue L, et al. Occurrence, Antibiotic Resistance, and Population Diversity of Listeria monocytogenes isolated from fresh aquatic products in China. Front Microbiol. 2018;9. https:\/\/doi.org\/10.3389\/fmicb.2018.02215.","DOI":"10.3389\/fmicb.2018.02215"},{"issue":"3","key":"3650_CR64","doi-asserted-by":"publisher","first-page":"584","DOI":"10.1128\/cmr.14.3.584-640.2001","volume":"14","author":"JA V\u00e1zquez-Boland","year":"2001","unstructured":"V\u00e1zquez-Boland JA, Kuhn M, Berche P, Chakraborty T, Dom\u0131\u0301nguez-Bernal G, Goebel W, et al. Listeria Pathogenesis and Molecular Virudeterminantsinants. Clin Microbiol Rev. 2001;14(3):584\u2013640. https:\/\/doi.org\/10.1128\/cmr.14.3.584-640.2001.","journal-title":"Clin Microbiol Rev"},{"issue":"3","key":"3650_CR65","doi-asserted-by":"publisher","first-page":"210","DOI":"10.1007\/BF01963840","volume":"9","author":"J McLauchlin","year":"1990","unstructured":"McLauchlin J. Distribution of serovars ofListeria monocytogenes isolated from different categories of patients with listeriosis. Eur J Clin Microbiol Infect Dis. 1990;9(3):210\u20133. https:\/\/doi.org\/10.1007\/BF01963840.","journal-title":"Eur J Clin Microbiol Infect Dis"},{"key":"3650_CR66","doi-asserted-by":"publisher","first-page":"204doi","DOI":"10.1186\/1746-6148-9-204","volume":"9","author":"R Crespo","year":"2013","unstructured":"Crespo R, Garner MM, Hopkins SG, Shah DH. Outbreak of Listeria monocytogenes in an urban poultry flock. BMC Vet Res. 2013;9:204doi. https:\/\/doi.org\/10.1186\/1746-6148-9-204.","journal-title":"BMC Vet Res"},{"issue":"2","key":"3650_CR67","first-page":"117","volume":"198","author":"A Weber","year":"1995","unstructured":"Weber A, Potel J, Sch\u00e4fer-Schmidt R, Prell A, Datzmann C. [Studies on the occurrence of Listeria monocytogenes in fecal samples of domestic and companion animals]. Zentralbl Hyg Umweltmed. 1995;198(2):117\u201323.","journal-title":"Zentralbl Hyg Umweltmed"}],"container-title":["BMC Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12866-024-03650-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1186\/s12866-024-03650-5\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12866-024-03650-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,2,3]],"date-time":"2025-02-03T07:03:08Z","timestamp":1738566188000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcmicrobiol.biomedcentral.com\/articles\/10.1186\/s12866-024-03650-5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,2,3]]},"references-count":67,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2025,12]]}},"alternative-id":["3650"],"URL":"https:\/\/doi.org\/10.1186\/s12866-024-03650-5","relation":{"has-preprint":[{"id-type":"doi","id":"10.21203\/rs.3.rs-4510467\/v1","asserted-by":"object"}]},"ISSN":["1471-2180"],"issn-type":[{"value":"1471-2180","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,2,3]]},"assertion":[{"value":"31 May 2024","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"14 November 2024","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"3 February 2025","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The CHAMPS study was conducted following the approval of the research review committee (icddr, b protocol number PR-16082) and the ethical review committee of icddr, b. All procedures performed in the study involving human participants were in accordance with the ethical standards of the institutional and\/or national research committee and with the 1964 Helsinki Declaration and its later amendments or comparable ethical standards. Informed consent was obtained from the legal guardians or family members of all stillbirths or deceased children included in the study. The consent process ensured that participants were fully informed about the purpose, procedures, risks, and benefits of the study, and their participation was entirely voluntary. Written consent forms were signed by the legal guardians or family members before any study-related procedures were initiated. No animal was included in this investigation.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare no competing interests.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"61"}}