{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,8]],"date-time":"2026-06-08T01:58:15Z","timestamp":1780883895825,"version":"3.54.1"},"reference-count":68,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2026,4,23]],"date-time":"2026-04-23T00:00:00Z","timestamp":1776902400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"},{"start":{"date-parts":[[2026,6,8]],"date-time":"2026-06-08T00:00:00Z","timestamp":1780876800000},"content-version":"vor","delay-in-days":46,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"}],"funder":[{"name":"This work was supported financially by the National Key Technology Research and Development Program of China","award":["2023YFD1702200"],"award-info":[{"award-number":["2023YFD1702200"]}]},{"name":"the Guangdong Basic and Applied Basic Research Foundation","award":["2024A1515011125"],"award-info":[{"award-number":["2024A1515011125"]}]},{"name":"the Science and Technology Program of Guangzhou","award":["2025B03J0001"],"award-info":[{"award-number":["2025B03J0001"]}]},{"name":"the Guangdong Strategic Special Fund for Rural Revitalization","award":["2023-WPY-00-004"],"award-info":[{"award-number":["2023-WPY-00-004"]}]},{"name":"the Guangdong Strategic Special Fund for Rural Revitalization","award":["2023-WPY-00-005"],"award-info":[{"award-number":["2023-WPY-00-005"]}]},{"name":"the Low carbon agriculture and carbon neutralization Research Center","award":["XT202508"],"award-info":[{"award-number":["XT202508"]}]},{"name":"the Low carbon agriculture and carbon neutralization Research Center","award":["XT202220"],"award-info":[{"award-number":["XT202220"]}]},{"name":"Special Fund for Scientific Innovation Strategy Construction of High-level Academy of Agriculture Science","award":["R2023PY-JX019"],"award-info":[{"award-number":["R2023PY-JX019"]}]},{"name":"Special Fund for Scientific Innovation Strategy Construction of High-level Academy of Agriculture Science","award":["R2020PY-JG012"],"award-info":[{"award-number":["R2020PY-JG012"]}]},{"name":"Special fund for the introduction or training of scientific and technological talents of Guangdong Academy of Agricultural Sciences","award":["R2021YJ-QG007"],"award-info":[{"award-number":["R2021YJ-QG007"]}]},{"name":"Special fund for the introduction or training of scientific and technological talents of Guangdong Academy of Agricultural Sciences","award":["R2021YJ-YB1003"],"award-info":[{"award-number":["R2021YJ-YB1003"]}]},{"name":"the State Key Laboratory of Swine and Poultry Breeding Industry","award":["2025ZQQZ-G23"],"award-info":[{"award-number":["2025ZQQZ-G23"]}]},{"name":"the Key-Area Research and Development Program of Guangdong Province","award":["2023B0202010027"],"award-info":[{"award-number":["2023B0202010027"]}]},{"name":"Modern Agricultural Industrial Technology System of Guangdong Province","award":["2024CXTD17"],"award-info":[{"award-number":["2024CXTD17"]}]},{"name":"the Open Competition Program of the Top Nine Critical Priorities of Agricultural Science and Technology Innovation for the 14th Five-Year Plan of Guangdong Province","award":["2023SDZG08"],"award-info":[{"award-number":["2023SDZG08"]}]},{"name":"the Special Fund for Rural Revitalization Strategy of Guangdong","award":["2024TS-3-3"],"award-info":[{"award-number":["2024TS-3-3"]}]},{"name":"the Guangdong Strategic Specical Fund of Rural Revitalization","award":["2022-440000-43010104-9463"],"award-info":[{"award-number":["2022-440000-43010104-9463"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Microbiol"],"DOI":"10.1186\/s12866-026-05072-x","type":"journal-article","created":{"date-parts":[[2026,4,23]],"date-time":"2026-04-23T10:24:10Z","timestamp":1776939850000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["A novel Sinomonas strain and Its genus-wide genomic insights into plant growth-promoting potential"],"prefix":"10.1186","volume":"26","author":[{"given":"Hangtao","family":"Wu","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yusheng","family":"Lu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kaizhi","family":"Xie","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chong","family":"Liu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Changmin","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dan","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kun","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yaying","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lili","family":"Sun","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chaohong","family":"Shi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Huanlong","family":"Peng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jiexin","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wenjie","family":"Gu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,4,23]]},"reference":[{"key":"5072_CR1","doi-asserted-by":"publisher","first-page":"104954","DOI":"10.1016\/j.worlddev.2020.104954","volume":"132","author":"E Fukase","year":"2020","unstructured":"Fukase E, Martin W. Economic growth, convergence, and world food demand and supply. World Dev. 2020;132:104954.","journal-title":"World Dev"},{"key":"5072_CR2","doi-asserted-by":"crossref","unstructured":"Vargas RR, Achouri M, Maroulis J, Caon L. Healthy soils: a prerequisite for sustainable food security. Environ Earth Sci. 2016;75(3):180.","DOI":"10.1007\/s12665-015-5099-7"},{"issue":"1","key":"5072_CR3","first-page":"1","volume":"5","author":"MMA Youssef","year":"2014","unstructured":"Youssef MMA, Eissa MFM. Biofertilizers and their role in management of plant parasitic nematodes. A review. J Biotechnol Pharm Res. 2014;5(1):1\u20136.","journal-title":"J Biotechnol Pharm Res"},{"key":"5072_CR4","doi-asserted-by":"publisher","first-page":"1100235","DOI":"10.3389\/fpls.2023.1100235","volume":"14","author":"SK Sepp","year":"2023","unstructured":"Sepp SK, Vasar M, Davison J, Oja J, Anslan S, Al-Quraishy S, Bahram M, Bueno CG, Cantero JJ, Fabiano EC, Decocq G, Drenkhan R, Fraser L, Garibay Oriel R, Hiiesalu I, Koorem K, K\u00f5ljalg U, Moora M, Mucina L, \u00d6pik M, P\u00f5lme S, P\u00e4rtel M, Phosri C, Semchenko M, Vahter T, Vasco Palacios AM, Tedersoo L, Zobel M. Global diversity and distribution of nitrogen-fixing bacteria in the soil. Front Plant Sci. 2023;14:1100235.","journal-title":"Front Plant Sci"},{"issue":"1","key":"5072_CR5","doi-asserted-by":"publisher","first-page":"49","DOI":"10.1007\/s42729-020-00342-7","volume":"21","author":"P Rawat","year":"2021","unstructured":"Rawat P, Das S, Shankhdhar D, Shankhdhar SC. Phosphate-solubilizing microorganisms: mechanism and their role in phosphate solubilization and uptake. J Soil Sci Plant Nutr. 2021;21(1):49\u201368.","journal-title":"J Soil Sci Plant Nutr"},{"key":"5072_CR6","doi-asserted-by":"publisher","first-page":"127885","DOI":"10.1016\/j.micres.2024.127885","volume":"288","author":"S Babar","year":"2024","unstructured":"Babar S, Baloch A, Qasim M, Wang J, Wang X, Li Y, Khalid S, Jiang C. Unearthing the soil-bacteria nexus to enhance potassium bioavailability for global sustainable agriculture: A mechanistic preview. Microbiol Res. 2024;288:127885.","journal-title":"Microbiol Res"},{"issue":"3","key":"5072_CR7","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1007\/s11274-021-03003-8","volume":"7","author":"K Bhakat","year":"2021","unstructured":"Bhakat K, Chakraborty A, Islam E. Characterization of zinc solubilization potential of arsenic tolerant Burkholderia spp. isolated from rice rhizospheric soil. World J Microbiol Biotechnol. 2021;7(3):39.","journal-title":"World J Microbiol Biotechnol"},{"issue":"7","key":"5072_CR8","doi-asserted-by":"publisher","first-page":"615","DOI":"10.1007\/s10482-023-01828-x","volume":"116","author":"M Pantoja-Guerra","year":"2023","unstructured":"Pantoja-Guerra M, Burkett-Cadena M, Cadena J, Dunlap CA, Ram\u00edrez CA. Lysinibacillus spp.: an IAA-producing endospore forming-bacteria that promotes plant growth. Antonie Van Leeuwenhoek. 2023;116(7):615\u201330.","journal-title":"Antonie Van Leeuwenhoek"},{"issue":"4","key":"5072_CR9","doi-asserted-by":"publisher","first-page":"66","DOI":"10.3390\/biotech12040066","volume":"12","author":"JI Woo","year":"2023","unstructured":"Woo JI, Injamum-Ul-Hoque M, Zainurin N, Shaffique S, Kwon EH, Gam HJ, Jeon JR, Lee IJ, Joo GJ, Kang SM. Gibberellin-Producing Bacteria Isolated from Coastal Soil Enhance Seed Germination of Mallow and Broccoli Plants under Saline Conditions. BioTech (Basel). 2023;12(4):66.","journal-title":"BioTech (Basel)"},{"key":"5072_CR10","doi-asserted-by":"publisher","first-page":"153629","DOI":"10.1016\/j.jplph.2022.153629","volume":"270","author":"MF Mekureyaw","year":"2022","unstructured":"Mekureyaw MF, Pandey C, Hennessy RC, Nicolaisen MH, Liu F, Nybroe O, Roitsch T. The cytokinin-producing plant beneficial bacterium Pseudomonas fluorescens G20-18 primes tomato (Solanum lycopersicum) for enhanced drought stress responses. J Plant Physiol. 2022;270:153629.","journal-title":"J Plant Physiol"},{"issue":"6","key":"5072_CR11","doi-asserted-by":"publisher","first-page":"611","DOI":"10.1111\/1751-7915.12148","volume":"7","author":"S Yang","year":"2014","unstructured":"Yang S, Zhang X, Cao Z, Zhao K, Wang S, Chen M, Hu X. Growth-promoting Sphingomonas paucimobilis\u2005ZJSH1 associated with Dendrobium officinale through phytohormone production and nitrogen fixation. Microb Biotechnol. 2014;7(6):611\u201320.","journal-title":"Microb Biotechnol"},{"issue":"17","key":"5072_CR12","first-page":"2371","volume":"13","author":"AM Timofeeva","year":"2024","unstructured":"Timofeeva AM, Galyamova MR, Sedykh SE. How Do Plant Growth-Promoting Bacteria Use Plant Hormones to Regulate Stress Reactions? Plants (Basel). 2024;13(17):2371.","journal-title":"Plants (Basel)"},{"issue":"10","key":"5072_CR13","doi-asserted-by":"publisher","first-page":"680","DOI":"10.1038\/s41580-022-00479-6","volume":"23","author":"R Waadt","year":"2022","unstructured":"Waadt R, Seller CA, Hsu PK, Takahashi Y, Munemasa S, Schroeder JI. Plant hormone regulation of abiotic stress responses. Nat Rev Mol Cell Biol. 2022;23(10):680\u201394.","journal-title":"Nat Rev Mol Cell Biol"},{"key":"5072_CR14","doi-asserted-by":"publisher","first-page":"259","DOI":"10.1099\/ijs.0.000695-0","volume":"59","author":"Y Zhou","year":"2009","unstructured":"Zhou Y, Wei W, Wang X, Lai R. Proposal of Sinomonas flava gen. nov., sp. nov., and description of Sinomonas atrocyanea comb. nov. to accommodate Arthrobacter atrocyaneus. Int J Syst Evol Microbiol. 2009;59:259\u201363.","journal-title":"Int J Syst Evol Microbiol"},{"issue":"Pt 4","key":"5072_CR15","doi-asserted-by":"publisher","first-page":"764","DOI":"10.1099\/ijs.0.030361-0","volume":"62","author":"Y Zhou","year":"2012","unstructured":"Zhou Y, Chen X, Zhang Y, Wang W, Xu J. Description of Sinomonas soli sp. nov., reclassification of Arthrobacter echigonensis and Arthrobacter albidus (Ding et al. 2009) as Sinomonas echigonensis comb. nov. and Sinomonas albida comb. nov., respectively, and emended description of the genus Sinomonas. Int J Syst Evol Microbiol. 2012;62(Pt 4):764\u20139.","journal-title":"Int J Syst Evol Microbiol"},{"issue":"4","key":"5072_CR16","doi-asserted-by":"publisher","first-page":"887","DOI":"10.1007\/s10482-015-0543-y","volume":"108","author":"QQ Guo","year":"2015","unstructured":"Guo QQ, Ming H, Meng XL, Huang JR, Duan YY, Li SH, Li S, Zhang JX, Li WJ, Nie GX. Sinomonas halotolerans sp. nov., an actinobacterium isolated from a soil sample. Antonie Van Leeuwenhoek. 2015;108(4):887\u201395.","journal-title":"Antonie Van Leeuwenhoek"},{"issue":"Pt 3","key":"5072_CR17","doi-asserted-by":"publisher","first-page":"996","DOI":"10.1099\/ijs.0.000053","volume":"65","author":"LH Lee","year":"2015","unstructured":"Lee LH, Azman AS, Zainal N, Yin WF, Mutalib NA, Chan KG. Sinomonas humi sp. nov., an amylolytic actinobacterium isolated from mangrove forest soil. Int J Syst Evol Microbiol. 2015;65(Pt 3):996\u20131002.","journal-title":"Int J Syst Evol Microbiol"},{"issue":"5","key":"5072_CR18","doi-asserted-by":"publisher","first-page":"318","DOI":"10.1038\/ja.2014.161","volume":"68","author":"DM Prabhu","year":"2015","unstructured":"Prabhu DM, Quadri SR, Cheng J, Liu L, Chen W, Yang Y, Hozzein WN, Lingappa K, Li WJ. Sinomonas mesophila sp. nov., isolated from ancient fort soil. J Antibiot (Tokyo). 2015;68(5):318\u201321.","journal-title":"J Antibiot (Tokyo)"},{"issue":"4","key":"5072_CR19","doi-asserted-by":"publisher","first-page":"827","DOI":"10.1007\/s10482-014-0252-y","volume":"106","author":"MY Zhang","year":"2014","unstructured":"Zhang MY, Xie J, Zhang TY, Xu H, Cheng J, Li SH, Li WJ, Zhang YX. 2014. Sinomonas notoginsengisoli sp. nov., isolated from the rhizosphere of Panax notoginseng. Antonie Van Leeuwenhoek. 2014;106(4):827\u2009\u2013\u200935.","journal-title":"Antonie Van Leeuwenhoek"},{"issue":"Pt 4","key":"5072_CR20","doi-asserted-by":"publisher","first-page":"1133","DOI":"10.1099\/ijs.0.000064","volume":"65","author":"YY Bao","year":"2015","unstructured":"Bao YY, Huang Z, Mao DM, Sheng XF, He LY. Sinomonas susongensis sp. nov., isolated from the surface of weathered biotite. Int J Syst Evol Microbiol. 2015;65(Pt 4):1133\u20137.","journal-title":"Int J Syst Evol Microbiol"},{"key":"5072_CR21","doi-asserted-by":"crossref","unstructured":"Wan J, Zhou Y, Sun H, Li H, Yao Q, Zhu H. Sinomonas terricola sp. nov., a plant-beneficial bacterium isolated from litchi rhizosphere soil in Guangdong, China. Int J Syst Evol Microbiol. 2024;74(5):006375.","DOI":"10.1099\/ijsem.0.006375"},{"key":"5072_CR22","doi-asserted-by":"crossref","unstructured":"Fu J, Shen Y, Duan S, Luo H, Ma X, Yan L, Fang C, Yang R. Sinomonas puerhi sp. nov. isolated from the rhizosphere soil of Pu-erh tea based on whole-genomic profiling. Int J Syst Evol Microbiol. 2025;75(4):006752.","DOI":"10.1099\/ijsem.0.006752"},{"issue":"5","key":"5072_CR23","doi-asserted-by":"publisher","first-page":"2016","DOI":"10.1111\/nph.20370","volume":"245","author":"Y Fu","year":"2025","unstructured":"Fu Y, Wang J, Su Z, Chen Q, Li J, Zhao J, Xuan W, Miao Y, Zhang J, Zhang R. Sinomonas gamaensis NEAU-HV1 remodels the IAA14-ARF7\/19 interaction to promote plant growth. New Phytol. 2025;245(5):2016\u201337.","journal-title":"New Phytol"},{"issue":"2","key":"5072_CR24","doi-asserted-by":"publisher","first-page":"170","DOI":"10.5423\/PPJ.OA.09.2016.0187","volume":"33","author":"M Adhikari","year":"2017","unstructured":"Adhikari M, Yadav DR, Kim SW, Um YH, Kim HS, Lee SC, Song JY, Kim HG, Lee YS. Biological Control of Bacterial Fruit Blotch of Watermelon Pathogen (Acidovorax citrulli) with Rhizosphere Associated Bacteria. Plant Pathol J. 2017;33(2):170\u201383.","journal-title":"Plant Pathol J"},{"issue":"5","key":"5072_CR25","doi-asserted-by":"publisher","first-page":"455","DOI":"10.1089\/cmb.2012.0021","volume":"19","author":"A Bankevich","year":"2012","unstructured":"Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 2012;19(5):455\u201377.","journal-title":"J Comput Biol"},{"key":"5072_CR26","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1186\/1471-2164-9-75","volume":"9","author":"RK Aziz","year":"2008","unstructured":"Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. The RAST Server: rapid annotations using subsystems technology. BMC Genomics. 2008;9:75.","journal-title":"BMC Genomics"},{"issue":"8","key":"5072_CR27","doi-asserted-by":"publisher","first-page":"2115","DOI":"10.1093\/molbev\/msx148","volume":"34","author":"J Huerta-Cepas","year":"2017","unstructured":"Huerta-Cepas J, Forslund K, Coelho LP, Szklarczyk D, Jensen LJ, von Mering C, Bork P. Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper. Mol Biol Evol. 2017;34(8):2115\u201322.","journal-title":"Mol Biol Evol"},{"key":"5072_CR28","doi-asserted-by":"publisher","first-page":"1281","DOI":"10.1007\/s10482-017-0844-4","volume":"110","author":"SH Yoon","year":"2017","unstructured":"Yoon SH, Ha SM, Lim J. A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie Van Leeuwenhoek. 2017;110:1281\u20136.","journal-title":"Antonie Van Leeuwenhoek"},{"issue":"4","key":"5072_CR29","doi-asserted-by":"publisher","first-page":"280","DOI":"10.1007\/s12275-018-8014-6","volume":"56","author":"SI Na","year":"2018","unstructured":"Na SI, Kim YO, Yoon SH, Ha SM, Baek I, Chun J. UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction. J Microbiol. 2018;56(4):280\u20135.","journal-title":"J Microbiol"},{"issue":"Suppl 1","key":"5072_CR30","doi-asserted-by":"publisher","first-page":"36","DOI":"10.1186\/s12864-017-4337-7","volume":"19","author":"Y Zhao","year":"2018","unstructured":"Zhao Y, Sun C, Zhao D, Zhang Y, You Y, Jia X, Yang J, Wang L, Wang J, Fu H, Kang Y, Chen F, Yu J, Wu J, Xiao J. PGAP-X: extension on pan-genome analysis pipeline. BMC Genomics. 2018;19(Suppl 1):36.","journal-title":"BMC Genomics"},{"key":"5072_CR31","first-page":"472471","volume":"12","author":"S Patz","year":"2021","unstructured":"Patz S, Gautam A, Becker M, Ruppel S, Rodr\u00edguez-Palenzuela P, Huson DH. PLaBAse: A Comprehensive Web Resource for Analyzing the Plant Growth-Promoting Potential of Plant-Associated Bacteria. Biorxiv. 2021;12:472471.","journal-title":"Biorxiv"},{"issue":"5","key":"5072_CR32","doi-asserted-by":"publisher","first-page":"e0109922","DOI":"10.1128\/spectrum.01099-22","volume":"10","author":"S Ashrafi","year":"2022","unstructured":"Ashrafi S, Kuzmanovi\u0107 N, Patz S, Lohwasser U, Bunk B, Spr\u00f6er C, Lorenz M, Elhady A, Fr\u00fchling A, Neumann-Schaal M, Verbarg S, Becker M, Th\u00fcnen T. Two New Rhizobiales Species Isolated from Root Nodules of Common Sainfoin (Onobrychis viciifolia) Show Different Plant Colonization Strategies. Microbiol Spectr. 2022;10(5):e0109922.","journal-title":"Microbiol Spectr"},{"issue":"12","key":"5072_CR33","doi-asserted-by":"publisher","first-page":"194","DOI":"10.1007\/s10482-025-02210-9","volume":"118","author":"H Wu","year":"2025","unstructured":"Wu H, Lu Y, Xie K, Liu C, Zhou C, Zhang K, Wang D, Li Y, Sun L, Shi C, Peng H, Zhang J, Gu W. Sinomonas oryzagri sp. nov., a plant-growth- promoting bacterium isolated from rice paddy soil. Antonie Van Leeuwenhoek. 2025;118(12):194.","journal-title":"Antonie Van Leeuwenhoek"},{"issue":"4","key":"5072_CR34","doi-asserted-by":"publisher","first-page":"1328","DOI":"10.1128\/AEM.66.4.1328-1333.2000","volume":"66","author":"JA Klappenbach","year":"2000","unstructured":"Klappenbach JA, Dunbar JM, Schmidt TM. rRNA operon copy number reflects ecological strategies of bacteria. Appl Environ Microbiol. 2000;66(4):1328\u201333.","journal-title":"Appl Environ Microbiol"},{"key":"5072_CR35","doi-asserted-by":"publisher","first-page":"1285756","DOI":"10.3389\/fmicb.2023.1285756","volume":"14","author":"K Kunal, Pranaw","year":"2023","unstructured":"Kunal, Pranaw K, Kumawat KC, Meena VS, Editorial. Plant growth-promoting rhizobacteria (PGPR) and plant hormones: an approach for plant abiotic stress management and sustainable agriculture. Front Microbiol. 2023;14:1285756.","journal-title":"Front Microbiol"},{"key":"5072_CR36","doi-asserted-by":"publisher","first-page":"49","DOI":"10.1146\/annurev-arplant-042809-112308","volume":"61","author":"Y Zhao","year":"2010","unstructured":"Zhao Y. Auxin biosynthesis and its role in plant development. Annu Rev Plant Biol. 2010;61:49\u201364.","journal-title":"Annu Rev Plant Biol"},{"key":"5072_CR37","doi-asserted-by":"publisher","first-page":"1729","DOI":"10.1093\/jxb\/eri205","volume":"56","author":"JAW Morgan","year":"2005","unstructured":"Morgan JAW, Bending GD, White PJ. Biological costs and benefits to plant-microbe interactions in the rhizosphere. J Exp Bot. 2005;56:1729\u201339.","journal-title":"J Exp Bot"},{"issue":"7","key":"5072_CR38","doi-asserted-by":"publisher","first-page":"1411","DOI":"10.3390\/molecules24071411","volume":"24","author":"P Zhang","year":"2019","unstructured":"Zhang P, Jin T, Kumar Sahu S, Xu J, Shi Q, Liu H, Wang Y. The Distribution of Tryptophan-Dependent Indole-3-Acetic Acid Synthesis Pathways in Bacteria Unraveled by Large-Scale Genomic Analysis. Molecules. 2019;24(7):1411.","journal-title":"Molecules"},{"key":"5072_CR39","doi-asserted-by":"publisher","first-page":"525","DOI":"10.1016\/j.envexpbot.2019.03.028","volume":"162","author":"GL Jorge","year":"2019","unstructured":"Jorge GL, Kisiala A, Morrison E, Megan A, Nogueira APO, Emery RJN. Endosymbiotic Methylobacterium oryzae mitigates the impact of limited water availability in lentil (Lens culinaris Medik.) by increasing plant cytokinin levele. Environ Exp Bot. 2019;162:525\u201340.","journal-title":"Environ Exp Bot"},{"key":"5072_CR40","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1007\/s11104-018-3810-7","volume":"434","author":"M Hallama","year":"2019","unstructured":"Hallama M, Pekrun C, Lambers H, Kandeler E. Hidden miners\u2013the roles of cover crops and soil microorganisms in phosphorus cycling through agroecosystems. Plant Soil. 2019;434:7\u201345.","journal-title":"Plant Soil"},{"key":"5072_CR41","doi-asserted-by":"publisher","first-page":"858804","DOI":"10.3389\/fpls.2022.858804","volume":"13","author":"N De Zutter","year":"2022","unstructured":"De Zutter N, Ameye M, Bekaert B, Verwaeren J, De Gelder L, Audenaert K. Uncovering New Insights and Misconceptions on the Effectiveness of Phosphate Solubilizing Rhizobacteria in Plants: A Meta-Analysis. Front Plant Sci. 2022;13:858804.","journal-title":"Front Plant Sci"},{"issue":"39","key":"5072_CR42","doi-asserted-by":"publisher","first-page":"40927","DOI":"10.1074\/jbc.M405464200","volume":"279","author":"O Delumeau","year":"2004","unstructured":"Delumeau O, Dutta S, Brigulla M, Kuhnke G, Hardwick SW, V\u00f6lker U, Yudkin MD, Lewis RJ. Functional and structural characterization of RsbU, a stress signaling protein phosphatase 2\u00a0C. J Biol Chem. 2004;279(39):40927\u201337.","journal-title":"J Biol Chem"},{"key":"5072_CR43","doi-asserted-by":"publisher","first-page":"1069","DOI":"10.1387\/ijdb.082820mg","volume":"53","author":"MC Gingras","year":"2009","unstructured":"Gingras MC, Kharitidi D, Ch\u00e9nard V, Uetani N, Bouchard M, Tremblay ML, Pause A. Expression analysis and essential role of the putative tyrosine phosphatase His-domain-containing protein tyrosine phosphatase (HD-PTP). Int J Dev Biol. 2009;53:1069\u201374.","journal-title":"Int J Dev Biol"},{"key":"5072_CR44","doi-asserted-by":"publisher","first-page":"752","DOI":"10.3389\/fmicb.2020.00752","volume":"11","author":"W Wan","year":"2020","unstructured":"Wan W, Qin Y, Wu H, Zuo W, He H, Tan J, Wang Y, He D. Isolation and characterization of phosphorus solubilizing bacteria with multiple phosphorus sources utilizing capability and their potential for lead immobilization in soil. Front Microbiol. 2020;11:752.","journal-title":"Front Microbiol"},{"key":"5072_CR45","doi-asserted-by":"publisher","first-page":"2041","DOI":"10.1099\/13500872-142-8-2041","volume":"142","author":"S Eder","year":"1996","unstructured":"Eder S, Shi L, Jensen K, Yamane K, Hulett FM. A Bacillus subtilis secreted phosphodiesterase\/alkaline phosphatase is the product of a pho regulon gene, phoD. Microbiol (Reading Engl). 1996;142:2041\u20137.","journal-title":"Microbiol (Reading Engl)"},{"key":"5072_CR46","doi-asserted-by":"publisher","first-page":"111283","DOI":"10.1016\/j.plantsci.2022.111283","volume":"320","author":"H Xu","year":"2022","unstructured":"Xu H, Zhang H, Fan Y, Wang R, Cui R, Liu X, Chu S, Jiao Y, Zhang X, Zhang D. The purple acid phosphatase GmPAP17 predominantly enhances phosphorus use efficiency in soybean. Plant Sci. 2022;320:111283.","journal-title":"Plant Sci"},{"issue":"21","key":"5072_CR47","doi-asserted-by":"publisher","first-page":"1787","DOI":"10.1023\/A:1026224101580","volume":"25","author":"XG Lei","year":"2003","unstructured":"Lei XG, Porres JM. Phytase enzymology, applications, and biotechnology. Biotechnol Lett. 2003;25(21):1787\u201394.","journal-title":"Biotechnol Lett"},{"issue":"1","key":"5072_CR48","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1038\/ja.2013.99","volume":"67","author":"WT Liu","year":"2014","unstructured":"Liu WT, Lamsa A, Wong WR, Boudreau PD, Kersten R, Peng Y, Moree WJ, Duggan BM, Moore BS, Gerwick WH, Linington RG, Pogliano K, Dorrestein PC. MS\/MS-based networking and peptidogenomics guided genome mining revealed the stenothricin gene cluster in Streptomyces roseosporus. J Antibiot (Tokyo). 2014;67(1):99\u2013104.","journal-title":"J Antibiot (Tokyo)"},{"issue":"12","key":"5072_CR49","doi-asserted-by":"publisher","first-page":"1892","DOI":"10.7164\/antibiotics.45.1892","volume":"45","author":"JS Wells","year":"1992","unstructured":"Wells JS, O\u2019Sullivan J, Aklonis C, Ax HA, Tymiak AA, Kirsch DR, Trejo WH, Principe P. Dactylocyclines, novel tetracycline derivatives produced by a Dactylosporangium sp. I. Taxonomy, production, isolation and biological activity. J Antibiot (Tokyo). 1992;45(12):1892\u20138.","journal-title":"J Antibiot (Tokyo)"},{"issue":"2","key":"5072_CR50","doi-asserted-by":"publisher","first-page":"127","DOI":"10.3390\/md17020127","volume":"17","author":"M Shao","year":"2019","unstructured":"Shao M, Ma J, Li Q, Ju J. Identification of the Anti-Infective Aborycin Biosynthetic Gene Cluster from Deep-Sea-Derived Streptomyces sp. SCSIO ZS0098 Enables Production in a Heterologous Host. Mar Drugs. 2019;17(2):127.","journal-title":"Mar Drugs"},{"key":"5072_CR51","doi-asserted-by":"publisher","first-page":"111700","DOI":"10.1016\/j.postharvbio.2021.111700","volume":"182","author":"HTT Nguyen","year":"2021","unstructured":"Nguyen HTT, Park AR, Hwang IM, Kim JC. Identification and delineation of action mechanism of antifungal agents: Reveromycin E and its new derivative isolated from Streptomyces sp. JCK-6141. Postharvest Biol Technol. 2021;182:111700.","journal-title":"Postharvest Biol Technol"},{"issue":"9","key":"5072_CR52","doi-asserted-by":"publisher","first-page":"5814","DOI":"10.1128\/AEM.00639-06","volume":"72","author":"I Holtsmark","year":"2006","unstructured":"Holtsmark I, Mantzilas D, Eijsink VG, Brurberg MB. Purification, characterization, and gene sequence of michiganin A, an actagardine-like lantibiotic produced by the tomato pathogen Clavibacter michiganensis subsp. michiganensis. Appl Environ Microbiol. 2006;72(9):5814\u201321.","journal-title":"Appl Environ Microbiol"},{"issue":"5","key":"5072_CR53","doi-asserted-by":"publisher","first-page":"271","DOI":"10.7164\/antibiotics.25.271","volume":"25","author":"K Jomon","year":"1972","unstructured":"Jomon K, Kuroda Y, Ajisaka M, Sakai H. A new antibiotic, ikarugamycin. J Antibiot (Tokyo). 1972;25(5):271\u201380.","journal-title":"J Antibiot (Tokyo)"},{"issue":"9","key":"5072_CR54","doi-asserted-by":"publisher","first-page":"2040","DOI":"10.3390\/molecules29092040","volume":"29","author":"J Zhao","year":"2024","unstructured":"Zhao J, Li Q, Zeeshan M, Zhang G, Wang C, Han X, Yang D. Integrative Genomics and Bioactivity-Guided Isolation of Novel Antimicrobial Compounds from Streptomyces sp. KN37 in Agricultural Applications. Molecules. 2024;29(9):2040.","journal-title":"Molecules"},{"issue":"3","key":"5072_CR55","doi-asserted-by":"publisher","first-page":"fiw249","DOI":"10.1093\/femsec\/fiw249","volume":"93","author":"J Paterson","year":"2017","unstructured":"Paterson J, Jahanshah G, Li Y, Wang Q, Mehnaz S, Gross H. The contribution of genome mining strategies to the understanding of active principles of PGPR strains. FEMS Microbiol Ecol. 2017;93(3):fiw249.","journal-title":"FEMS Microbiol Ecol"},{"key":"5072_CR56","doi-asserted-by":"publisher","first-page":"634","DOI":"10.1094\/MPMI.1998.11.7.634","volume":"11","author":"S Manulis","year":"1998","unstructured":"Manulis S, Haviv-Chesner A, Brandl MT, Lindow SE, Barash I. Differential involvement of indole-3-acetic acid biosynthetic pathways in pathogenicity and epiphytic fitness of Erwinia herbicola pv. gypsophilae. Mol. Plant Microbe Int. 1998;11:634\u201342.","journal-title":"Plant Microbe Int"},{"issue":"8","key":"5072_CR57","doi-asserted-by":"publisher","first-page":"2853","DOI":"10.1093\/jxb\/ers091","volume":"63","author":"Y Mano","year":"2012","unstructured":"Mano Y, Nemoto K. The pathway of auxin biosynthesis in plants. J Exp Bot. 2012;63(8):2853\u201372.","journal-title":"J Exp Bot"},{"issue":"3","key":"5072_CR58","doi-asserted-by":"publisher","first-page":"989","DOI":"10.1104\/pp.111.175448","volume":"156","author":"AE Richardson","year":"2011","unstructured":"Richardson AE, Simpson RJ. Soil microorganisms mediating phosphorus availability update on microbial phosphorus. Plant Physiol. 2011;156(3):989\u201396.","journal-title":"Plant Physiol"},{"issue":"1","key":"5072_CR59","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1007\/s11104-018-3810-7","volume":"434","author":"M Hallama","year":"2019","unstructured":"Hallama M, Pekrun C, Lambers H, Kandeler E. Hidden miners-the roles of cover crops and soil microorganisms in phosphorus cycling through agroecosystems. Plant Soil. 2019;434(1):7\u201345.","journal-title":"Plant Soil"},{"issue":"23","key":"5072_CR60","first-page":"3312","volume":"13","author":"C Zhou","year":"2024","unstructured":"Zhou C, Shen H, Yan S, Ma C, Leng J, Song Y, Gao N. Acetoin Promotes Plant Growth and Alleviates Saline Stress by Activating Metabolic Pathways in Lettuce Seedlings. Plants (Basel). 2024;13(23):3312.","journal-title":"Plants (Basel)"},{"issue":"1","key":"5072_CR61","doi-asserted-by":"publisher","first-page":"121","DOI":"10.1186\/s12934-023-02133-y","volume":"22","author":"JH Ju","year":"2023","unstructured":"Ju JH, Jo MH, Heo SY, Kim MS, Kim CH, Paul NC, Sang H, Oh BR. Production of highly pure R,R-2,3-butanediol for biological plant growth promoting agent using carbon feeding control of Paenibacillus polymyxa MDBDO. Microb Cell Fact. 2023;22(1):121.","journal-title":"Microb Cell Fact"},{"key":"5072_CR62","doi-asserted-by":"publisher","first-page":"90","DOI":"10.3389\/fpls.2018.00090","volume":"22","author":"HG Kong","year":"2018","unstructured":"Kong HG, Shin TS, Kim TH, Ryu CM. Stereoisomers of the Bacterial Volatile Compound 2,3-Butanediol Differently Elicit Systemic Defense Responses of Pepper against Multiple Viruses in the Field. Front Plant Sci. 2018;22:9:90.","journal-title":"Front Plant Sci"},{"key":"5072_CR63","doi-asserted-by":"publisher","first-page":"1127","DOI":"10.3389\/fpls.2020.01127","volume":"11","author":"A El Moukhtari","year":"2020","unstructured":"El Moukhtari A, Cabassa-Hourton C, Farissi M, Savour\u00e9 A. How Does Proline Treatment Promote Salt Stress Tolerance During Crop Plant Development? Front Plant Sci. 2020;11:1127.","journal-title":"Front Plant Sci"},{"issue":"5","key":"5072_CR64","doi-asserted-by":"publisher","first-page":"553","DOI":"10.1016\/j.jplph.2006.03.010","volume":"164","author":"MA Hoque","year":"2007","unstructured":"Hoque MA, Okuma E, Banu MN, Nakamura Y, Shimoishi Y, Murata Y. Exogenous proline mitigates the detrimental effects of salt stress more than exogenous betaine by increasing antioxidant enzyme activities. J Plant Physiol. 2007;164(5):553\u201361.","journal-title":"J Plant Physiol"},{"issue":"1","key":"5072_CR65","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1007\/s13580-025-00680-4","volume":"66","author":"F Wang","year":"2025","unstructured":"Wang F, Jiang Z, Wang H, Liang F, Wang Y, Zhang J, Liu Z, Luo L, Chen X, Wang F. Exogenous trehalose alleviates the inhibitory effects of salt and drought stresses in okra plants. Hortic Environ Biotechnol. 2025;66(1):25\u201338.","journal-title":"Hortic Environ Biotechnol"},{"key":"5072_CR66","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.plaphy.2022.07.005","volume":"187","author":"A Raziq","year":"2022","unstructured":"Raziq A, Mohi Ud Din A, Anwar S, Wang Y, Jahan MS, He M, Ling CG, Sun J, Shu S, Guo S. Exogenous spermidine modulates polyamine metabolism and improves stress responsive mechanisms to protect tomato seedlings against salt stress. Plant Physiol Biochem. 2022;187:1\u201310.","journal-title":"Plant Physiol Biochem"},{"key":"5072_CR67","doi-asserted-by":"publisher","first-page":"114","DOI":"10.3389\/fpls.2018.00114","volume":"22","author":"FX Nascimento","year":"2018","unstructured":"Nascimento FX, Rossi MJ, Glick BR. Ethylene and 1-Aminocyclopropane-1-carboxylate (ACC) in Plant-Bacterial Interactions. Front Plant Sci. 2018;22:9:114.","journal-title":"Front Plant Sci"},{"issue":"1","key":"5072_CR68","doi-asserted-by":"publisher","first-page":"e0216921","DOI":"10.1128\/spectrum.02169-21","volume":"10","author":"DS Zaid","year":"2022","unstructured":"Zaid DS, Cai S, Hu C, Li Z, Li Y. Comparative Genome Analysis Reveals Phylogenetic Identity of Bacillus velezensis HNA3 and Genomic Insights into Its Plant Growth Promotion and Biocontrol Effects. Microbiol Spectr. 2022;10(1):e0216921.","journal-title":"Microbiol Spectr"}],"container-title":["BMC Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/article\/10.1186\/s12866-026-05072-x","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12866-026-05072-x.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12866-026-05072-x.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,6,8]],"date-time":"2026-06-08T01:02:16Z","timestamp":1780880536000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1186\/s12866-026-05072-x"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,4,23]]},"references-count":68,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2026,12]]}},"alternative-id":["5072"],"URL":"https:\/\/doi.org\/10.1186\/s12866-026-05072-x","relation":{},"ISSN":["1471-2180"],"issn-type":[{"value":"1471-2180","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,4,23]]},"assertion":[{"value":"2 February 2026","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"14 April 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"23 April 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"Not applicable.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare no competing interests.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"538"}}