{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T05:20:49Z","timestamp":1790832049753,"version":"4.1.0"},"reference-count":45,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2024,2,17]],"date-time":"2024-02-17T00:00:00Z","timestamp":1708128000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2024,2,17]],"date-time":"2024-02-17T00:00:00Z","timestamp":1708128000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"crossref","award":["31871556, 32001109"],"award-info":[{"award-number":["31871556, 32001109"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100003392","name":"Natural Science Foundation of Fujian Province","doi-asserted-by":"publisher","award":["2020J01547"],"award-info":[{"award-number":["2020J01547"]}],"id":[{"id":"10.13039\/501100003392","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Open Project Program of Guangdong Provincial Key Laboratory of Eco-circular Agriculture"},{"name":"Foundation of Institute of Modern Seed Industrial Engineering"},{"name":"Fujian Provincial Undergraduate Innovation Training Program","award":["S202210389075"],"award-info":[{"award-number":["S202210389075"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Plant Biol"],"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Background<\/jats:title>\n                    <jats:p>\n                      In paddy fields, the noxious weed barnyard grass secretes 2,4-dihydroxy-7-methoxy-2\n                      <jats:italic>H<\/jats:italic>\n                      -1,4-benzoxazin-3(4\n                      <jats:italic>H<\/jats:italic>\n                      )-one (DIMBOA) to interfere with rice growth. Rice is unable to synthesize DIMBOA. Rice cultivars with high or low levels of allelopathy may respond differently to DIMBOA.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>\n                      In this study, we found that low concentrations of DIMBOA (\u2264\u20090.06 mM) promoted seedling growth in allelopathic rice PI312777, while DIMBOA (\u2264\u20090.08 mM) had no significant influence on the nonallelopathic rice Lemont. DIMBOA treatment caused changes in the expression of a large number of glutathione\n                      <jats:italic>S-<\/jats:italic>\n                      transferase (GST) proteins, which resulting in enrichment of the glutathione metabolic pathway. This pathway facilitates plant detoxification of heterologous substances. The basal levels of GST activity in Lemont were significantly higher than those in PI312777, while GST activity in PI312777 was slightly induced by increasing DIMBOA concentrations. Overexpression of\n                      <jats:italic>GST<\/jats:italic>\n                      genes (\n                      <jats:italic>Os09g0367700<\/jats:italic>\n                      and\n                      <jats:italic>Os01g0949800<\/jats:italic>\n                      ) in these two cultivars enhanced rice resistance to DIMBOA.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Conclusions<\/jats:title>\n                    <jats:p>\n                      Taken together, our results indicated that different rice accessions with different levels of allelopathy have variable tolerance to DIMBOA. Lemont had higher GST activity, which helped it tolerate DIMBOA, while PI312777 had lower GST activity that was more inducible. The enhancement of\n                      <jats:italic>GST<\/jats:italic>\n                      expression facilitates rice tolerance to DIMBOA toxins from barnyard grass root exudates.\n                    <\/jats:p>\n                  <\/jats:sec>","DOI":"10.1186\/s12870-024-04802-5","type":"journal-article","created":{"date-parts":[[2024,2,16]],"date-time":"2024-02-16T23:25:59Z","timestamp":1708125959000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":9,"title":["Glutathione S-transferase activity facilitates rice tolerance to the barnyard grass root exudate DIMBOA"],"prefix":"10.1186","volume":"24","author":[{"given":"Huabin","family":"Zhang","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dan","family":"Mu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yushan","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xilin","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xue","family":"Yan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ke","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yanyang","family":"Jiao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jiayu","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hongmei","family":"Lin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wenxiong","family":"Lin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Changxun","family":"Fang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2024,2,17]]},"reference":[{"key":"4802_CR1","doi-asserted-by":"publisher","first-page":"163","DOI":"10.1016\/j.fcr.2016.12.003","volume":"203","author":"Z Zhang","year":"2017","unstructured":"Zhang Z, Gu T, Zhao B, Yang X, Peng Q, Li Y, Bai L. Effects of common Echinochloa varieties on grain yield and grain quality of rice. Field Crops Res. 2017;203:163\u201372.","journal-title":"Field Crops Res"},{"key":"4802_CR2","doi-asserted-by":"publisher","first-page":"426","DOI":"10.1017\/wet.2019.22","volume":"33","author":"MJ Osterholt","year":"2019","unstructured":"Osterholt MJ, Webster EP, Blouin DC, McKnight BM. Overlay of residual herbicides in rice for improved weed management. Weed Technol. 2019;33:426\u201330.","journal-title":"Weed Technol"},{"key":"4802_CR3","first-page":"7","volume-title":"Allelopathy in rice","author":"RH Dilday","year":"1998","unstructured":"Dilday RH, Yan WG, Moldenhauer KAK, Gravois KA. Allelopathic activity in rice for controlling major aquatic weeds. In: Olofsdotter M, editor. Allelopathy in rice. Los Banos: International Rice Research Institute; 1998. pp. 7\u201326."},{"key":"4802_CR4","doi-asserted-by":"publisher","first-page":"35","DOI":"10.26651\/2017-40-1-1064","volume":"40","author":"JY Li","year":"2017","unstructured":"Li JY, Zhang Q, Yang XY, Wu HM, Lin RL, He HB. A reappraisal of the content and the differences of phenolic acids between allelopathic and non-allelopathic rice accessions. Allelopathy J. 2017;40:35\u201346.","journal-title":"Allelopathy J"},{"key":"4802_CR5","doi-asserted-by":"publisher","first-page":"175","DOI":"10.1007\/s10886-013-0236-9","volume":"39","author":"H Kato-Noguchi","year":"2013","unstructured":"Kato-Noguchi H, Peters RJ. The role of momilactones in rice allelopathy. J Chem Ecol. 2013;39:175\u201385.","journal-title":"J Chem Ecol"},{"key":"4802_CR6","doi-asserted-by":"publisher","first-page":"1747","DOI":"10.1016\/j.jplph.2012.06.018","volume":"169","author":"H He","year":"2012","unstructured":"He H, Wang H, Fang C, Wu H, Guo X, Liu C, Lin Z, Lin W. Barnyard grass stress up regulates the biosynthesis of phenolic compounds in allelopathic rice. J Plant Physiol. 2012;169:1747\u201353.","journal-title":"J Plant Physiol"},{"key":"4802_CR7","doi-asserted-by":"publisher","first-page":"6007","DOI":"10.1021\/jf0703912","volume":"55","author":"CH Kong","year":"2007","unstructured":"Kong CH, Zhao H, Xu XH, Wang P, Gu Y. Activity and allelopathy of soil of flavone O-glycosides from rice. J Agric Food Chem. 2007;55:6007\u201312.","journal-title":"J Agric Food Chem"},{"key":"4802_CR8","first-page":"221","volume-title":"Rice: origin, history, technology and production","author":"AM Rimando","year":"2003","unstructured":"Rimando AM, Duke SO. Studies on rice allelochemicals. I. In: Smith CW, Dilday RH, editors. Rice: origin, history, technology and production. New York: Wiley; 2003. pp. 221\u201344."},{"key":"4802_CR9","doi-asserted-by":"publisher","first-page":"1368","DOI":"10.1111\/pce.12492","volume":"38","author":"CX Fang","year":"2015","unstructured":"Fang CX, Yang LK, Chen WX, Li LL, Zhang PL, Li YZ, He HB, Lin WX. Identification and comparative analysis of microRNAs in barnyardgrass (Echinochloa crus-galli) in response to rice allelopathy. Plant Cell Environ. 2015;38:1368\u201381.","journal-title":"Plant Cell Environ"},{"key":"4802_CR10","doi-asserted-by":"publisher","first-page":"1031","DOI":"10.1038\/s41467-017-01067-5","volume":"8","author":"L Guo","year":"2017","unstructured":"Guo L, Qiu J, Ye C, Jin G, Mao L, Zhang H, Yang X, Peng Q, Wang Y, Jia L, Lin Z, Li G, Fu F, Liu C, Chen L, Shen E, Wang W, Chu Q, Wu D, Wu S, Xia C, Zhang Y, Zhou X, Wang L, Wu L, Song W, Wang Y, Shu Q, Aoki D, Yumoto E, Yokota T, Miyamoto K, Okada K, Kim D-S, Cai D, Zhang C, Lou Y, Qian Q, Yamaguchi H, Yamane H, Kong C-H, Timko MP, Bai L, Fan L. Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed. Nat Commun. 2017;8:1031.","journal-title":"Nat Commun"},{"key":"4802_CR11","doi-asserted-by":"publisher","first-page":"1429","DOI":"10.1016\/0031-9422(90)80095-X","volume":"29","author":"L Cuevas","year":"1990","unstructured":"Cuevas L, Niemeyer HM, P\u00e9rez FJ. Reaction of DIMBOA, a resistance factor from cereals, with \u03b1-chymotrypsin. Phytochemistry. 1990;29:1429\u201332.","journal-title":"Phytochemistry"},{"key":"4802_CR12","doi-asserted-by":"publisher","first-page":"1691","DOI":"10.1023\/A:1010422727899","volume":"27","author":"H Wu","year":"2001","unstructured":"Wu H, Haig T, Pratley J, Lemerle D, An M. Allelochemicals in wheat (Triticum aestivum L.): production and exudation of 2, 4-dihydroxy-7-methoxy-1, 4-benzoxazin-3-one. J Chem Ecol. 2001;27:1691\u2013700.","journal-title":"J Chem Ecol"},{"key":"4802_CR13","doi-asserted-by":"publisher","first-page":"172","DOI":"10.1002\/ps.3985","volume":"72","author":"SZ Zhang","year":"2016","unstructured":"Zhang SZ, Li YH, Kong CH, Xu XH. Interference of allelopathic wheat with different weeds. Pest Manag Sci. 2016;72:172\u20138.","journal-title":"Pest Manag Sci"},{"key":"4802_CR14","doi-asserted-by":"publisher","first-page":"11033","DOI":"10.1007\/s11356-015-4309-x","volume":"22","author":"E Bonnaf\u00e9","year":"2015","unstructured":"Bonnaf\u00e9 E, Sroda S, Budzinski H, Vali\u00e8re A, Pedelluc J, Marty P, Geret F. Responses of cytochrome P450, GST, and MXR in the mollusk Corbicula fluminea to the exposure to hospital wastewater effluents. Environ Sci Pollut Res. 2015;22:11033\u201346.","journal-title":"Environ Sci Pollut Res"},{"key":"4802_CR15","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1097\/00008571-199602000-00002","volume":"6","author":"DR Nelson","year":"1996","unstructured":"Nelson DR, Koymans L, Kamataki T, Stegeman JJ, Feyereisen R, Waxman DJ, Waterman MR, Gotoh O, Coon MJ, Estabrook RW, Gunsalus IC. Nebert D W. P450 superfamily: update on new sequences, gene mapping, accession numbers and nomenclature. Pharmacogenetics. 1996;6:1\u201342.","journal-title":"Pharmacogenetics"},{"key":"4802_CR16","doi-asserted-by":"publisher","first-page":"363","DOI":"10.1016\/j.cbpc.2006.04.001","volume":"143","author":"KF Rewitz","year":"2006","unstructured":"Rewitz KF, Styrishave B, L\u00f8bner-Olsen A. Andersen OMarine invertebrate cytochrome P450: emerging insights from vertebrate and insects analogies. Comp Biochem Physiol C Toxicol Pharmacol. 2006;143:363\u201381.","journal-title":"Comp Biochem Physiol C Toxicol Pharmacol"},{"key":"4802_CR17","unstructured":"[GRIN] Germplasm Resources Information Network. Online Database, USDA, ARS, National Genetic Resources Program, National Germplasm Resources Laboratory, Beltsville, MD. www.ars-grin.gov. 2004."},{"key":"4802_CR18","doi-asserted-by":"publisher","first-page":"323","DOI":"10.1614\/WS-04-036R","volume":"53","author":"DR Gealy","year":"2005","unstructured":"Gealy DR, Estorninos LE Jr., Gbur EE, Chavez RSC. Interference interactions of two rice cultivars and their F3 cross with barnyardgrass (Echinochloa crus-galli) in a replacement series study. Weed Sci. 2005;53:323\u201330.","journal-title":"Weed Sci"},{"key":"4802_CR19","doi-asserted-by":"publisher","first-page":"883","DOI":"10.2135\/cropsci1985.0011183X002500050038x","volume":"25","author":"CN Bollich","year":"1985","unstructured":"Bollich CN, Webb BD, Marchetti MA, Scott JE. Registration of \u2018Lemont\u2019 rice. Crop Sci. 1985;25:883\u20135.","journal-title":"Crop Sci"},{"key":"4802_CR20","doi-asserted-by":"publisher","first-page":"e37201","DOI":"10.1371\/journal.pone.0037201","volume":"7","author":"HB He","year":"2012","unstructured":"He HB, Wang HB, Fang CX, Lin ZH, Yu ZM, Lin WX. Separation of allelopathy from resource competition using rice\/barnyardgrass mixedcultures. PLoS ONE. 2012;7:e37201.","journal-title":"PLoS ONE"},{"key":"4802_CR21","doi-asserted-by":"publisher","first-page":"3036","DOI":"10.1002\/ps.6457","volume":"77","author":"TA Gaines","year":"2021","unstructured":"Gaines TA, Busi R, K\u00fcpper A. Can new herbicide discovery allow weed management to outpace resistance evolution? Pest Manag Sci. 2021;77:3036\u201341.","journal-title":"Pest Manag Sci"},{"key":"4802_CR22","doi-asserted-by":"publisher","first-page":"745","DOI":"10.1007\/s00344-017-9770-y","volume":"37","author":"Q Zhang","year":"2018","unstructured":"Zhang Q, Li L, Li J, Wang H, Fang C, Yang X, He H. Increasing rice allelopathy by induction of barnyard grass (Echinochloa crus-galli) root exudates. J Plant Growth Regul. 2018;37:745\u201354.","journal-title":"J Plant Growth Regul"},{"key":"4802_CR23","doi-asserted-by":"publisher","first-page":"521","DOI":"10.1126\/science.290.5491.521","volume":"290","author":"L Cuevas","year":"2000","unstructured":"Cuevas L, Niemeyer HM, P\u00e9rez FJ, Aschehoug. Invasive plants versus their new and old neighbors: a mechanism for exotic invasion. Science. 2000;290:521\u20133.","journal-title":"Science"},{"key":"4802_CR24","doi-asserted-by":"publisher","first-page":"1102","DOI":"10.1016\/j.tplants.2018.09.009","volume":"23","author":"L Guo","year":"2018","unstructured":"Guo L, Qiu J, Li L-F, Lu B, Olsen K, Fan L. Genomic clues for crop\u2013weed interactions and evolution. Trends Plant Sci. 2018;23:1102\u201315.","journal-title":"Trends Plant Sci"},{"key":"4802_CR25","doi-asserted-by":"publisher","first-page":"469","DOI":"10.1046\/j.1399-3054.2003.00183.x","volume":"119","author":"C Frova","year":"2003","unstructured":"Frova C. The plant glutathione transferase gene family: genomic structure, functions, expression and evolution. Physiol Plant. 2003;119:469\u201379.","journal-title":"Physiol Plant"},{"key":"4802_CR26","doi-asserted-by":"publisher","first-page":"109","DOI":"10.1007\/s11010-010-0384-y","volume":"336","author":"S Banerjee","year":"2019","unstructured":"Banerjee S, Goswami R. GST profile expression study in some selected plants: in silico approach. Mol Cell Biochem. 2019;336:109\u201326.","journal-title":"Mol Cell Biochem"},{"key":"4802_CR27","doi-asserted-by":"publisher","first-page":"1836","DOI":"10.3389\/fpls.2018.01836","volume":"9","author":"G Gullner","year":"2018","unstructured":"Gullner G, Komives T, Kir\u00e1ly L, Schr\u00f6der P. Glutathione S-transferase enzymes in plant-pathogen interactions. Front Plant Sci. 2018;9:1836.","journal-title":"Front Plant Sci"},{"key":"4802_CR28","doi-asserted-by":"publisher","first-page":"646","DOI":"10.1016\/j.jhazmat.2013.08.023","volume":"26","author":"W Zhang","year":"2013","unstructured":"Zhang W, Yin K, Li B, Chen L. A glutathione S-transferase from Proteus mirabilis involved in heavy metal resistance and its potential application in removal of Hg2+. J Hazard Mater. 2013;26:646\u201352.","journal-title":"J Hazard Mater"},{"key":"4802_CR29","doi-asserted-by":"publisher","first-page":"192","DOI":"10.3389\/fphar.2014.00192","volume":"5","author":"P-A Lallement","year":"2014","unstructured":"Lallement P-A, Brouwer B, Keech O, Hecker A, Rouhier N. The still mysterious roles of cysteine-containing glutathione transferases in plants. Front Pharmacol. 2014;5:192.","journal-title":"Front Pharmacol"},{"key":"4802_CR30","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1186\/1471-2164-11-73","volume":"11","author":"M Jain","year":"2010","unstructured":"Jain M, Ghanashyam C, Bhattacharjee A. Comprehensive expression analysis suggests overlapping and specific roles of rice glutathione S-transferase genes during development and stress responses. BMC Genomics. 2010;11:73.","journal-title":"BMC Genomics"},{"key":"4802_CR31","doi-asserted-by":"publisher","first-page":"5812","DOI":"10.1073\/pnas.1221179110","volume":"110","author":"I Cummins","year":"2013","unstructured":"Cummins I, Wortley DJ, Sabbadin F, He Z, Coxona CR, Strakera HE et al. Key role for a glutathione transferase inmultiple-herbicide resistance in grass weeds. P Natl Acad Sci USA. 2013;110:5812\u20137.","journal-title":"P Natl Acad Sci USA"},{"key":"4802_CR32","doi-asserted-by":"publisher","first-page":"409","DOI":"10.1007\/s11032-009-9302-y","volume":"24","author":"T Hu","year":"2009","unstructured":"Hu T, Qv X, Xiao G, Huang X. Enhanced tolerance to herbicide of rice plants by over-expression of a glutathione S-transferase. Mol Breed. 2009;24:409\u201318.","journal-title":"Mol Breed"},{"key":"4802_CR33","doi-asserted-by":"publisher","first-page":"21867","DOI":"10.1074\/jbc.M500694200","volume":"280","author":"SR Baerson","year":"2005","unstructured":"Baerson SR, S\u00e1nchez-Moreiras A, Pedrol-Bonjoch N, Schulz M, Kagan IA, Agarwal AK, Reigosa MJ, Duke SO. Detoxification and transcriptome response in Arabidopsis seedlings exposed to the allelochemical benzoxazolin-2(3H)-one. J Biol Chem. 2005;280:21867\u201381.","journal-title":"J Biol Chem"},{"key":"4802_CR34","doi-asserted-by":"publisher","first-page":"2127","DOI":"10.1093\/jxb\/erz540","volume":"71","author":"CX Fang","year":"2020","unstructured":"Fang CX, Yang LK, Chen WX, Li LL, Zhang PL, Li YZ, He HB, Lin WX. MYB57 transcriptionally regulates MAPK11 to interact with PAL2;3 and modulate rice allelopathy. J Exp Bot. 2020;71:2127\u201341.","journal-title":"J Exp Bot"},{"key":"4802_CR35","doi-asserted-by":"publisher","first-page":"30","DOI":"10.1186\/s12284-019-0290-1","volume":"12","author":"Q Zhang","year":"2019","unstructured":"Zhang Q, Zheng XY, Lin SX, Gu CZ, Li L, Li JY, Fang CX, He HB. Transcriptome analysis reveals that barnyard grass exudates increase the allelopathic potential of allelopathic and non-allelopathic rice (Oryza sativa) accessions. Rice. 2019;12:30.","journal-title":"Rice"},{"key":"4802_CR36","unstructured":"Yoshida S, Forno DA, Cock JH. Laboratory manual for physiological studies of rice, third edition. Manila: The International Rice Research Institute. 1976."},{"key":"4802_CR37","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s10725-011-9569-y","volume":"65","author":"CX Fang","year":"2011","unstructured":"Fang CX, Wang QS, Yu Y, Li QM, Zhang HL, Wu XC, Chen T, Lin WX. Suppression and overexpression of Lsi1 induce differential gene expression in rice under ultraviolet radiation. Plant Growth Regul. 2011;65:1\u201310.","journal-title":"Plant Growth Regul"},{"key":"4802_CR38","doi-asserted-by":"publisher","first-page":"1154","DOI":"10.1074\/mcp.M400129-MCP200","volume":"3","author":"PL Ross","year":"2004","unstructured":"Ross PL, Huang YN, Marchese JN, Williamson B, Parker K, Hattan S, Khainovski N, Pillai S, Dey S, Daniels S, Purkayastha S, Juhasz P, Martin S, Bartlet-Jones M, He F, Jacobson A, Pappin DJ. Multiplexed protein quantitation in Saccharomyces cerevisiae using aminereactive isobaric tagging reagents. Mol Cell Proteom. 2004;3:1154\u201369.","journal-title":"Mol Cell Proteom"},{"key":"4802_CR39","doi-asserted-by":"publisher","first-page":"647","DOI":"10.1586\/epr.10.29","volume":"7","author":"A Treumann","year":"2010","unstructured":"Treumann A, Thiede B. Isobaric protein and peptide quantification: perspectives and issues. Expert Rev Proteomic. 2010;7:647\u201353.","journal-title":"Expert Rev Proteomic"},{"key":"4802_CR40","doi-asserted-by":"publisher","first-page":"2280","DOI":"10.1002\/pmic.201300361","volume":"14","author":"B Wen","year":"2014","unstructured":"Wen B, Zhou R, Feng Q, Wang Q, Wang J, Liu S. IQuant: an automated pipeline for quantitative proteomics based upon isobaric tags. Proteomics. 2014;14:2280\u20135.","journal-title":"Proteomics"},{"key":"4802_CR41","doi-asserted-by":"crossref","unstructured":"Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2\u2009\u2013 \u2206\u2206CT method. Methods. 2001;25:402\u20138.","DOI":"10.1006\/meth.2001.1262"},{"key":"4802_CR42","unstructured":"Chen QH, Chen TY, Lin YJ, Chen H. Agrobacterium-mediated genetic transformation of japonica rice. In Yuan M, Du H, Li XH, editors. Rice Protocol eBook. Beijing: Bio-protocol. 2018. P. 245\u2013254."},{"key":"4802_CR43","unstructured":"Liu Y, Ling F, Lin YJ, Chen H. 2018. Agrobacterium-mediated transformation of indica rice. In Yuan M, Du H, Li XH, editors. Rice Protocol eBook. Beijing: Bio-protocol. 2018. P. 255\u2013264."},{"key":"4802_CR44","doi-asserted-by":"publisher","first-page":"D1211","DOI":"10.1093\/nar\/gky869","volume":"47","author":"J Ma","year":"2019","unstructured":"Ma J, Chen T, Wu S, Yang C, Bai M, Shu K, Li K, Zhang G, Jin Z, He F, Hermjakob H, Zhu Y. iProX: an integrated proteome resource. Nucleic Acids Res. 2019;47:D1211\u20137.","journal-title":"Nucleic Acids Res"},{"key":"4802_CR45","doi-asserted-by":"publisher","first-page":"D1522","DOI":"10.1093\/nar\/gkab1081","volume":"50","author":"T Chen","year":"2022","unstructured":"Chen T, Ma J, Liu Y, Chen Z, Xiao N, Lu Y, Fu Y, Yang C, Li M, Wu S, Wang X, Li D, He F, Hermjakob H, Zhu Y. iProX in 2021: connecting proteomics data sharing with big data. Nucleic Acids Res. 2022;50:D1522\u20137.","journal-title":"Nucleic Acids Res"}],"container-title":["BMC Plant Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12870-024-04802-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1186\/s12870-024-04802-5\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12870-024-04802-5.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,2,16]],"date-time":"2024-02-16T23:27:06Z","timestamp":1708126026000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcplantbiol.biomedcentral.com\/articles\/10.1186\/s12870-024-04802-5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,2,17]]},"references-count":45,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2024,12]]}},"alternative-id":["4802"],"URL":"https:\/\/doi.org\/10.1186\/s12870-024-04802-5","relation":{},"ISSN":["1471-2229"],"issn-type":[{"value":"1471-2229","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,2,17]]},"assertion":[{"value":"2 April 2023","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"6 February 2024","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"17 February 2024","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"All methods were performed in accordance with relevant institutional, national, and international guidelines and legislation.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare no competing interests.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"117"}}