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This neoclerodane diterpenoid is an agonist of the human\n                      <jats:italic>\u039a<\/jats:italic>\n                      -opioid receptor with potential medical applications in the treatment of chronic pain, addiction, and post-traumatic stress disorder. Only two steps of the approximately twelve step biosynthetic sequence leading to SalA have been resolved to date.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>To facilitate pathway elucidation in this ethnomedicinal plant species, here we report a chromosome level genome assembly. A high-quality genome sequence was assembled with an N50 value of 41.4\u00a0Mb and a BUSCO completeness score of 98.4%. The diploid (2n\u2009=\u200922) genome of\u2009~\u2009541\u00a0Mb is comparable in size and ploidy to most other members of this genus. Two diterpene biosynthetic gene clusters were identified and are highly enriched in previously unidentified cytochrome P450s as well as crotonolide G synthase, which forms the dihydrofuran ring early in the SalA pathway. Coding sequences for other enzyme classes with likely involvement in downstream steps of the SalA pathway (BAHD acyl transferases, alcohol dehydrogenases, and O-methyl transferases) were scattered throughout the genome with no clear indication of clustering. Differential gene expression analysis suggests that most of these genes are not inducible by methyl jasmonate treatment.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Conclusions<\/jats:title>\n                    <jats:p>\n                      This genome sequence and associated gene annotation are among the highest resolution in\n                      <jats:italic>Salvia<\/jats:italic>\n                      , a genus well known for the medicinal properties of its members. Here we have identified the cohort of genes responsible for the remaining steps in the SalA pathway. This genome sequence and associated candidate genes will facilitate the elucidation of SalA biosynthesis and enable an exploration of its full clinical potential.\n                    <\/jats:p>\n                  <\/jats:sec>","DOI":"10.1186\/s12870-024-05633-0","type":"journal-article","created":{"date-parts":[[2024,10,1]],"date-time":"2024-10-01T00:49:35Z","timestamp":1727743775000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":11,"title":["A chromosome level reference genome of Diviner\u2019s sage (Salvia divinorum) provides insight into salvinorin A biosynthesis"],"prefix":"10.1186","volume":"24","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9209-4459","authenticated-orcid":false,"given":"Scott A.","family":"Ford","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7313-8236","authenticated-orcid":false,"given":"Rob W.","family":"Ness","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0862-2149","authenticated-orcid":false,"given":"Moonhyuk","family":"Kwon","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1288-5347","authenticated-orcid":false,"given":"Dae-Kyun","family":"Ro","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7276-119X","authenticated-orcid":false,"given":"Michael A.","family":"Phillips","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2024,10,1]]},"reference":[{"issue":"3","key":"5633_CR1","doi-asserted-by":"publisher","first-page":"287","DOI":"10.1016\/0378-8741(83)90004-1","volume":"7","author":"LJ Vald\u00e9s III","year":"1983","unstructured":"Vald\u00e9s III LJ, D\u00edaz J, Paul AG. 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