{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,9]],"date-time":"2026-10-09T23:32:09Z","timestamp":1791588729808,"version":"4.3.4"},"reference-count":90,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2026,1,5]],"date-time":"2026-01-05T00:00:00Z","timestamp":1767571200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"},{"start":{"date-parts":[[2026,2,3]],"date-time":"2026-02-03T00:00:00Z","timestamp":1770076800000},"content-version":"vor","delay-in-days":29,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"}],"funder":[{"name":"Gansu Academy of Agricultural Sciences Talent Introduction Project","award":["2023GAAS44"],"award-info":[{"award-number":["2023GAAS44"]}]},{"name":"National Major Agricultural Science and Technology Project","award":["NK20220402"],"award-info":[{"award-number":["NK20220402"]}]},{"name":"China Agriculture Research System","award":["CARS-7-C1"],"award-info":[{"award-number":["CARS-7-C1"]}]},{"name":"National Center of Pratacultural Technology Innovation","award":["CCPTZX2023B05"],"award-info":[{"award-number":["CCPTZX2023B05"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Plant Biol"],"DOI":"10.1186\/s12870-025-08047-8","type":"journal-article","created":{"date-parts":[[2026,1,5]],"date-time":"2026-01-05T11:32:54Z","timestamp":1767612774000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["Integrative transcriptome-metabolome dissection of the molecular basis of lodging resistance in oat (Avena sativa L.) basal internodes"],"prefix":"10.1186","volume":"26","author":[{"given":"Yanming","family":"Ma","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ming","family":"Nan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Guiqin","family":"Zhao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jikuan","family":"Chai","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gengmei","family":"Min","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,1,5]]},"reference":[{"issue":"4","key":"8047_CR1","doi-asserted-by":"publisher","first-page":"52","DOI":"10.5897\/SRE2014.5820","volume":"9","author":"A Mushtaq","year":"2014","unstructured":"Mushtaq A, GulZaffar ADZ, Mehfuza H, Ahmad M, Dar Z, Habib M. A review on oat (Avena sativa L.) as a dual-purpose crop. Sci Res Essays. 2014;9(4):52\u20139.","journal-title":"Sci Res Essays"},{"issue":"12","key":"8047_CR2","first-page":"438","volume":"43","author":"C Ren","year":"2022","unstructured":"Ren C, Yan J, Dong R, Hu X. Research progress on oat nutrients, functional properties and related products. Sci Technol Food Ind. 2022;43(12):438\u201346.","journal-title":"Sci Technol Food Ind"},{"issue":"1","key":"8047_CR3","first-page":"64","volume":"49","author":"R Chawla","year":"2023","unstructured":"Chawla R, Minakshi J, Sandeep K, Phogat D, Nisha K, Prachi M, Sacita M, Babita R. Characterizing variation in oat (Avena sativa L.) accessions for grain and fodder yield determinants. Forage Res. 2023;49(1):64\u20138.","journal-title":"Forage Res"},{"issue":"11","key":"8047_CR4","doi-asserted-by":"publisher","first-page":"2591","DOI":"10.3390\/foods10112591","volume":"10","author":"D Paudel","year":"2021","unstructured":"Paudel D, Dhungana B, Caffe M, Krishnan P. A review of health-beneficial properties of Oats. Foods. 2021;10(11):2591.","journal-title":"Foods"},{"key":"8047_CR5","doi-asserted-by":"publisher","first-page":"969","DOI":"10.1007\/s42976-022-00348-0","volume":"51","author":"k Sukhdeep","year":"2023","unstructured":"Sukhdeep k, Rachana D, Bhardwaj, Rahul K, Satvir KG. Nutritional and yield potential of oat (Avena sativa L.) genotypes in dual-purpose crop system. Cereal Res Commun. 2023;51:969\u201380.","journal-title":"Cereal Res Commun"},{"key":"8047_CR6","doi-asserted-by":"publisher","first-page":"154","DOI":"10.1186\/s13059-020-02073-5","volume":"21","author":"Q Li","year":"2020","unstructured":"Li Q, Yan J. Sustainable agriculture in the era of omics: Knowledge-driven crop breeding. Genome Biol. 2020;21:154.","journal-title":"Genome Biol"},{"key":"8047_CR7","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1007\/s12892-021-00111-7","volume":"50","author":"D Silveira","year":"2022","unstructured":"Silveira D, Basso S, Ebone L. Morphological traits of stem to indirect selection of resistance to lodging in Avena sativa L. J Crop Sci Biotechnol. 2022;50:39\u201350.","journal-title":"J Crop Sci Biotechnol"},{"issue":"19","key":"8047_CR8","doi-asserted-by":"publisher","first-page":"2739","DOI":"10.3390\/plants13192739","volume":"13","author":"L Liu","year":"2024","unstructured":"Liu L, Liang G, Liu W. Differences in physicochemical properties of stems in oat (Avena sativa L.) varieties with distinct lodging resistance and their regulation of lodging at different planting densities. Plants. 2024;13(19):2739.","journal-title":"Plants"},{"issue":"6","key":"8047_CR9","doi-asserted-by":"publisher","first-page":"1408","DOI":"10.1016\/j.cj.2021.01.002","volume":"9","author":"Y Guo","year":"2021","unstructured":"Guo Y, Hu Y, Chen H, Yan P, Du Q, Wang Y, Wang H, Wang Z, Kang D, Li X. Identification of traits and genes associated with lodging resistance in maize. Crop J. 2021;9(6):1408\u201317.","journal-title":"Crop J"},{"issue":"17","key":"8047_CR10","doi-asserted-by":"publisher","first-page":"4211","DOI":"10.3390\/ijms20174211","volume":"20","author":"L Shah","year":"2019","unstructured":"Shah L, Yahya M, Shah SMA, Nadeem M, Ali A, Ali A, Wang J, Riaz MW, Rehman S, Wu W, Khan RM, Abbas A, Riaz A, Anis GB, Si H, Jiang H, Ma C. Improving lodging resistance: using wheat and rice as classical example. Int J Mol Sci. 2019;20(17):4211.","journal-title":"Int J Mol Sci"},{"key":"8047_CR11","doi-asserted-by":"publisher","first-page":"265","DOI":"10.2134\/agronj1954.00021962004600060006x","volume":"46","author":"JW Pendleton","year":"1954","unstructured":"Pendleton JW. The effect of lodging on spring oat yields and test weights. Agron J. 1954;46:265\u20137.","journal-title":"Agron J"},{"key":"8047_CR12","doi-asserted-by":"publisher","first-page":"209","DOI":"10.1016\/S0065-2113(08)60782-8","volume":"25","author":"MJ Pinthus","year":"1974","unstructured":"Pinthus MJ. Lodging in wheat, barley, and oats: the phenomenon, its causes, and preventive measures. Adv Agron. 1974;25:209\u201363.","journal-title":"Adv Agron"},{"issue":"6","key":"8047_CR13","doi-asserted-by":"publisher","first-page":"5222","DOI":"10.1007\/s11356-016-8237-1","volume":"24","author":"A Shah","year":"2017","unstructured":"Shah A, Tanveer M, Rehman A, Anjum S, Iqbal J, Ahmad R. Lodging stress in cereal-effects and management: an overview. Environ Sci Pollut Res Int. 2017;24(6):5222\u201337.","journal-title":"Environ Sci Pollut Res Int"},{"issue":"9","key":"8047_CR14","first-page":"2582","volume":"31","author":"M Nan","year":"2023","unstructured":"Nan M, Chai J, Jing F, Zhang L, Min G, Liu Y, Liu Y, Li, Zhao G. Research advances on lodging resistance of oat (Avena stiva L). Acta Agrestia Sinica. 2023;31(9):2582\u20139.","journal-title":"Acta Agrestia Sinica"},{"issue":"10","key":"8047_CR15","first-page":"646","volume":"21","author":"D Hamilton","year":"1941","unstructured":"Hamilton D. Certain oat culm characters and their relationship to lodging. Sci Agric. 1941;21(10):646\u201376.","journal-title":"Sci Agric"},{"issue":"2","key":"8047_CR16","doi-asserted-by":"publisher","first-page":"100165","DOI":"10.1016\/j.xplc.2021.100165","volume":"2","author":"D Wu","year":"2021","unstructured":"Wu D, Wu D, Feng H, Duan L, Dai G, Liu X, Wang K, Yang P, Chen G, Gay AP, Doonan JH, Niu Z, Xiong L, Yang W. A deep learning-integrated micro-CT image analysis pipeline for quantifying rice lodging resistance-related traits. Plant Commun. 2021;2(2):100165.","journal-title":"Plant Commun"},{"issue":"5","key":"8047_CR17","doi-asserted-by":"publisher","first-page":"645","DOI":"10.1007\/s10722-010-9604-2","volume":"58","author":"Y Li","year":"2011","unstructured":"Li Y, Long C, Kato K, Yang C. Indigenous knowledge and traditional conservation of hulless barley (Hordeum vulgare) germplasm resources in the Tibetan communities of Shangri-la, Yunnan, SW China. Genet Resour Crop Evol. 2011;58(5):645\u201355.","journal-title":"Genet Resour Crop Evol"},{"issue":"2","key":"8047_CR18","doi-asserted-by":"publisher","first-page":"267","DOI":"10.1111\/plb.13058","volume":"22","author":"R Zhang","year":"2020","unstructured":"Zhang R, Jia Z, Ma X, Ma H, Zhao Y. Characterising the morphological characters and carbohydrate metabolism of oat culms and their association with lodging resistance. Plant Biol (Stuttgart Germany). 2020;22(2):267\u201376.","journal-title":"Plant Biol (Stuttgart Germany)"},{"issue":"4","key":"8047_CR19","doi-asserted-by":"publisher","first-page":"1105","DOI":"10.1016\/j.jia.2023.06.027","volume":"23","author":"W Yang","year":"2024","unstructured":"Yang W, Zhang S, Hou Q, Gao J, Wand H, Chen X, Liao X, Zhang F, Zhao C, Qin Z. Transcriptomic and metabolomic analysis provides insights into lignin biosynthesis and accumulation and differences in lodging resistance in hybrid wheat. J Integr Agric. 2024;23(4):1105\u201317.","journal-title":"J Integr Agric"},{"key":"8047_CR20","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/j.fcr.2013.11.015","volume":"157","author":"D Peng","year":"2014","unstructured":"Peng D, Chen X, Yin Y, Lu K, Yang W, Tang Y, Wang Z. Lodging resistance of winter wheat (Triticum aestivum L.): lignin accumulation and its related enzymes activities due to the application of Paclobutrazol or Gibberellin acid. Field Crops Res. 2014;157:1\u20137.","journal-title":"Field Crops Res"},{"issue":"11","key":"8047_CR21","first-page":"172","volume":"31","author":"M Nan","year":"2022","unstructured":"Nan M, Li J, Zhao G, Chai J, Liu Y. Relationship between lodging resistance of Oats and the basal internode stem characteristics and lignin synthesis. Acta Prataculturae Sinica. 2022;31(11):172\u201380.","journal-title":"Acta Prataculturae Sinica"},{"key":"8047_CR22","doi-asserted-by":"publisher","first-page":"100197","DOI":"10.1016\/j.stress.2023.100197","volume":"9","author":"L Yang","year":"2024","unstructured":"Yang L, Liu J, Li N, Pei Y, Peng J, Wang Z. An integrated strategy coordinating endogenous and exogenous approaches to alleviate crop lodging. Plant Stress. 2024;9:100197.","journal-title":"Plant Stress"},{"key":"8047_CR23","doi-asserted-by":"publisher","first-page":"1795","DOI":"10.3390\/agronomy12081795","volume":"12","author":"Q Li","year":"2022","unstructured":"Li Q, Fu C, Liang C, Ni X, Zhao X, Chen M, Ou L. Crop lodging and the roles of lignin, cellulose, and hemicellulose in lodging resistance. Agronomy. 2022;12:1795.","journal-title":"Agronomy"},{"key":"8047_CR24","first-page":"4","volume-title":"Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data","author":"Y Kawahara","year":"2013","unstructured":"Kawahara Y, Bastide M, Hamilton J, Kanamori H, McCombie W, Ouyang S, Schwartz D, Tanaka T, Wu J, Zhou S, Childs K, Davidson R, Lin H, Quesada-Ocampo L, Vaillancourt B, Sakai H, Lee S, Kim J, Numa H, Itoh T, Buell C, Matsumoto T. Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Volume 6. New York, N.Y.): Rice; 2013. p. 4. 1."},{"issue":"Pt 1","key":"8047_CR25","doi-asserted-by":"publisher","first-page":"131619","DOI":"10.1016\/j.ijbiomac.2024.131619","volume":"268","author":"W Shen","year":"2024","unstructured":"Shen W, Zhang C, Wang G, Li Y, Zhang X, Cui Y, Hu Z, Shen S, Xu X, Cao Y, Li X, Wen J, Lin J. Variation pattern in the macromolecular (cellulose, hemicelluloses, lignin) composition of cell walls in Pinus tabulaeformis tree trunks at different ages as revealed using multiple techniques. Int J Biol Macromol. 2024;268(Pt 1):131619.","journal-title":"Int J Biol Macromol"},{"issue":"1","key":"8047_CR26","doi-asserted-by":"publisher","first-page":"123","DOI":"10.1093\/jxb\/erad367","volume":"75","author":"S Lv","year":"2024","unstructured":"Lv S, Lin Z, Shen J, Luo L, Xu Q, Li L, Gui J. OsTCP19 coordinates Inhibition of lignin biosynthesis and promotion of cellulose biosynthesis to modify lodging resistance in rice. J Exp Bot. 2024;75(1):123\u201336.","journal-title":"J Exp Bot"},{"issue":"3","key":"8047_CR27","doi-asserted-by":"publisher","first-page":"453","DOI":"10.1016\/S2095-3119(14)60935-7","volume":"14","author":"L Bo","year":"2015","unstructured":"Bo L, Jia j, Dao L. Constructing the barley model for genetic transformation in. Triticeae J Integr Agric. 2015;14(3):453\u201368.","journal-title":"Triticeae J Integr Agric"},{"issue":"4","key":"8047_CR28","doi-asserted-by":"publisher","first-page":"814","DOI":"10.1111\/pbi.13509","volume":"19","author":"Z Guo","year":"2021","unstructured":"Guo Z, Liu X, Zhang B, Yuan X, Xing Y, Liu H, Luo L, Chen G, Xiong L. Genetic analyses of lodging resistance and yield provide insights into post-Green-Revolution breeding in rice. Plant Biotechnol J. 2021;19(4):814\u201329.","journal-title":"Plant Biotechnol J"},{"issue":"6","key":"8047_CR29","doi-asserted-by":"publisher","first-page":"794","DOI":"10.1017\/S0021859624000091","volume":"161","author":"E Mengistie","year":"2023","unstructured":"Mengistie E, McDonald A. Effects of cell wall components on lodging resistance in cereal crops: a review. J Agricultural Sci. 2023;161(6):794\u2013807.","journal-title":"J Agricultural Sci"},{"issue":"3","key":"8047_CR30","doi-asserted-by":"publisher","first-page":"1272","DOI":"10.1104\/pp.19.01070","volume":"182","author":"P Geng","year":"2020","unstructured":"Geng P, Zhang S, Liu J, Zhao C, Wu J, Cao Y, Fu C, Han X, He H, Zhao Q. MYB20, MYB42, MYB43, and MYB85 regulate phenylalanine and lignin biosynthesis during secondary cell wall formation. Plant Physiol. 2020;182(3):1272\u201383.","journal-title":"Plant Physiol"},{"issue":"30","key":"8047_CR31","doi-asserted-by":"publisher","first-page":"1127","DOI":"10.1104\/pp.19.00615","volume":"181","author":"S Jiao","year":"2019","unstructured":"Jiao S, Hazebroek J, Chamberlin M, Perkins M, Sandhu A, Gupta R, Simcox K, Ying L, Prall A, Heetland L, Meeley R, Multani D. Chitinase-like1 plays a role in stalk tensile strength in maize. Plant Physiol. 2019;181(30):1127\u201347.","journal-title":"Plant Physiol"},{"issue":"6","key":"8047_CR32","doi-asserted-by":"publisher","first-page":"806","DOI":"10.1016\/j.molp.2018.03.013","volume":"11","author":"Q Sun","year":"2018","unstructured":"Sun Q, Liu X, Yang J, Liu W, Du Q, Wang H, Fu C, Li W. MicroRNA528 affects lodging resistance of maize by regulating lignin biosynthesis under nitrogen-luxury conditions. Mol Plant. 2018;11(6):806\u201314.","journal-title":"Mol Plant"},{"issue":"8","key":"8047_CR33","doi-asserted-by":"publisher","first-page":"713","DOI":"10.1016\/j.tplants.2016.04.006","volume":"21","author":"Q Zhao","year":"2016","unstructured":"Zhao Q. Lignification: flexibility, biosynthesis and regulation. Trends Plant Sci. 2016;21(8):713\u201321.","journal-title":"Trends Plant Sci"},{"issue":"3","key":"8047_CR34","doi-asserted-by":"publisher","first-page":"895","DOI":"10.1104\/pp.110.155119","volume":"153","author":"R Vanholme","year":"2010","unstructured":"Vanholme R, Demedts B, Morreel K, Ralph J, Boerjan W. Lignin biosynthesis and structure. Plant Physiol. 2010;153(3):895\u2013905.","journal-title":"Plant Physiol"},{"issue":"6150","key":"8047_CR35","doi-asserted-by":"publisher","first-page":"1103","DOI":"10.1126\/science.1241602","volume":"341","author":"R Vanholme","year":"2013","unstructured":"Vanholme R, Cesarino I, Rataj K, Xiao Y, Sundin L, Goeminne G, Kim H, Cross J, Morreel K, Araujo P, Welsh L, Haustraete J, McClellan C, Vanholme B, Ralph J, Simpson GG, Halpin C, Boerjan W. Caffeoyl Shikimate esterase (CSE) is an enzyme in the lignin biosynthetic pathway in Arabidopsis. Science. 2013;341(6150):1103\u20136.","journal-title":"Science"},{"issue":"9","key":"8047_CR36","doi-asserted-by":"publisher","first-page":"1093","DOI":"10.1111\/pbi.12700","volume":"15","author":"F Li","year":"2017","unstructured":"Li F, Xie G, Huang J, Zhang R, Li Y, Zhang M, Wang Y, Li A, Li X, Xia T, Qu C, Hu F, Ragauskas AJ, Peng L. OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice. Plant Biotechnol J. 2017;15(9):1093\u2013104.","journal-title":"Plant Biotechnol J"},{"issue":"5","key":"8047_CR37","doi-asserted-by":"publisher","first-page":"1015","DOI":"10.3390\/genes14051015","volume":"14","author":"F Wen","year":"2023","unstructured":"Wen F, Wu X, Zhang L, Xiao J, Li T, Jia M. Molecular cloning and characterization of WRKY12, a pathogen induced WRKY transcription factor from Akebia trifoliata. Genes (Basel). 2023;14(5):1015.","journal-title":"Genes (Basel)"},{"issue":"3","key":"8047_CR38","doi-asserted-by":"publisher","first-page":"1997","DOI":"10.1093\/plphys\/kiad200","volume":"192","author":"Y Xue","year":"2023","unstructured":"Xue Y, Shan Y, Yao J, Wang R, Xu S, Liu D, Ye Z, Lin J, Li X, Xue C, Wu J. The transcription factor PbrMYB24 regulates lignin and cellulose biosynthesis in stone cells of Pear fruits. Plant Physiol. 2023;192(3):1997\u20132014.","journal-title":"Plant Physiol"},{"key":"8047_CR39","doi-asserted-by":"publisher","first-page":"1232880","DOI":"10.3389\/fpls.2023.1232880","volume":"14","author":"X Zhao","year":"2023","unstructured":"Zhao X, Jiang X, Li Z, Song Q, Xu C, Luo K. Jasmonic acid regulates lignin deposition in Poplar through JAZ5-MYB\/NAC interaction. Front Plant Sci. 2023;14:1232880.","journal-title":"Front Plant Sci"},{"key":"8047_CR40","doi-asserted-by":"publisher","first-page":"288","DOI":"10.3389\/fpls.2015.00288","volume":"6","author":"Y Nakano","year":"2015","unstructured":"Nakano Y, Yamaguchi M, Endo H, Rejab NA, Ohtani M. NAC-MYB-based transcriptional regulation of secondary cell wall biosynthesis in land plants. Front Plant Sci. 2015;6:288.","journal-title":"Front Plant Sci"},{"key":"8047_CR41","doi-asserted-by":"publisher","first-page":"652","DOI":"10.3389\/fpls.2020.00652","volume":"11","author":"J Zhang","year":"2020","unstructured":"Zhang J, Tuskan G, Tschaplinski T, Muchero W, Chen J. Transcriptional and post-transcriptional regulation of lignin biosynthesis pathway genes in Populus. Front Plant Sci. 2020;11:652.","journal-title":"Front Plant Sci"},{"issue":"9","key":"8047_CR42","doi-asserted-by":"publisher","first-page":"2776","DOI":"10.1105\/tpc.107.053678","volume":"19","author":"R Zhong","year":"2007","unstructured":"Zhong R, Richardson E, Ye Z. The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis. Plant Cell. 2007;19(9):2776\u201392.","journal-title":"Plant Cell"},{"key":"8047_CR43","doi-asserted-by":"publisher","first-page":"100174","DOI":"10.1016\/j.cpb.2020.100174","volume":"24","author":"M Takuji","year":"2020","unstructured":"Takuji M, Yuki T, Toshiaki U. MYB-mediated regulation of lignin biosynthesis in grasses. Curr Plant Biology. 2020;24:100174.","journal-title":"Curr Plant Biology"},{"issue":"6","key":"8047_CR44","doi-asserted-by":"publisher","first-page":"1801","DOI":"10.1093\/jxb\/erz039","volume":"70","author":"C Xue","year":"2019","unstructured":"Xue C, Yao J, Xue Y, Su G, Wang L, Lin LK, Allan A, Zhang S, Wu J. PbrMYB169 positively regulates lignification of stone cells in Pear fruit. J Exp Bot. 2019;70(6):1801\u201314.","journal-title":"J Exp Bot"},{"issue":"2","key":"8047_CR45","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1093\/pcp\/pcu140","volume":"56","author":"R Zhong","year":"2015","unstructured":"Zhong R, Ye Z. Secondary cell walls: biosynthesis, patterned deposition and transcriptional regulation. Plant Cell Physiol. 2015;56(2):195\u2013214.","journal-title":"Plant Cell Physiol"},{"issue":"6","key":"8047_CR46","doi-asserted-by":"publisher","first-page":"1237","DOI":"10.1111\/tpj.16107","volume":"113","author":"Y Tang","year":"2023","unstructured":"Tang Y, Lu L, Sheng Z, Zhao D, Tao J. An R2R3-MYB network modulates stem strength by regulating lignin biosynthesis and secondary cell wall thickening in herbaceous peony. Plant J. 2023;113(6):1237\u201358.","journal-title":"Plant J"},{"key":"8047_CR47","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1016\/j.plantsci.2017.03.012","volume":"266","author":"W Xiao","year":"2018","unstructured":"Xiao W, Yang Y, Yu J. ZmNST3 and ZmNST4 are master switches for secondary wall deposition in maize (Zea Mays L). Plant Sci. 2018;266:83\u201394.","journal-title":"Plant Sci"},{"issue":"2","key":"8047_CR48","doi-asserted-by":"publisher","first-page":"700","DOI":"10.1104\/pp.18.01167","volume":"179","author":"P Hu","year":"2019","unstructured":"Hu P, Zhang K, Yang C. BpNAC012 positively regulates abiotic stress responses and secondary wall biosynthesis. Plant Physiol. 2019;179(2):700\u201317.","journal-title":"Plant Physiol"},{"issue":"3","key":"8047_CR49","doi-asserted-by":"publisher","first-page":"895","DOI":"10.1111\/pbi.12439","volume":"14","author":"L Gallego-Giraldo","year":"2016","unstructured":"Gallego-Giraldo L, Shadle G, Shen H, Barros-Rios J, Fresquet Corrales S, Wang H, Dixon RA. Combining enhanced biomass density with reduced lignin level for improved forage quality. Plant Biotechnol J. 2016;14(3):895\u2013904.","journal-title":"Plant Biotechnol J"},{"issue":"4","key":"8047_CR50","first-page":"407","volume":"7","author":"F Vignols","year":"1995","unstructured":"Vignols F, Rigau J, Torres MA, Capellades M, Puigdom\u00e8nech P. The brown midrib3 (bm3) mutation in maize occurs in the gene encoding caffeic acid O-methyltransferase. Plant Cell. 1995;7(4):407\u201316.","journal-title":"Plant Cell"},{"issue":"1","key":"8047_CR51","doi-asserted-by":"publisher","first-page":"113","DOI":"10.1007\/s00425-015-2295-3","volume":"242","author":"Q Ma","year":"2015","unstructured":"Ma Q, Luo H. Biochemical characterization of caffeoyl coenzyme A 3-O-methyltransferase from wheat. Planta. 2015;242(1):113\u201322.","journal-title":"Planta"},{"issue":"2","key":"8047_CR52","doi-asserted-by":"publisher","first-page":"288","DOI":"10.1016\/j.molp.2017.12.004","volume":"11","author":"C Liu","year":"2018","unstructured":"Liu C, Zheng S, Gui J, Fu C, Yu H, Song D, Shen J, Qin P, Liu X, Han B, Yang Y, Li L. Shortened basal internodes encodes a Gibberellin 2-oxidase and contributes to lodging resistance in rice. Mol Plant. 2018;11(2):288\u201399.","journal-title":"Mol Plant"},{"key":"8047_CR53","doi-asserted-by":"publisher","first-page":"282","DOI":"10.1186\/1471-2229-10-282","volume":"10","author":"L Wang","year":"2010","unstructured":"Wang L, Guo K, Li Y, Tu Y, Hu H, Wang B, Cui X, Peng L. Expression profiling and integrative analysis of the CESA\/CSL superfamily in rice. BMC Plant Biol. 2010;10:282.","journal-title":"BMC Plant Biol"},{"key":"8047_CR54","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1186\/1471-2229-9-99","volume":"9","author":"Y Yin","year":"2009","unstructured":"Yin Y, Huang J, Xu Y. The cellulose synthase superfamily in fully sequenced plants and algae. BMC Plant Biol. 2009;9:99.","journal-title":"BMC Plant Biol"},{"issue":"3","key":"8047_CR55","doi-asserted-by":"publisher","first-page":"733","DOI":"10.1016\/j.cj.2022.11.011","volume":"11","author":"S Xu","year":"2023","unstructured":"Xu S, Zhang M, Ye J, Hu D, Zhang Y, Li Z, Liu J, Sun Y, Wang S, Yuan X, Feng Y, Xu Q, Wei X, Zeng D, Yang Y. Brittle culm 25, which encodes an UDP-xylose synthase, affects cell wall properties in rice. Crop J. 2023;11(3):733\u201343.","journal-title":"Crop J"},{"key":"8047_CR56","first-page":"1382","volume":"26","author":"M Nan","year":"2018","unstructured":"Nan M, Zhao GQ, Li J, Chai J, Liu Y. Research of lodging resistance and the stem morphological characteristics of different Avena sativa L. varieties. Acta Agrestia Sinica. 2018;26:1382\u201391.","journal-title":"Acta Agrestia Sinica"},{"issue":"17","key":"8047_CR57","doi-asserted-by":"publisher","first-page":"i884","DOI":"10.1093\/bioinformatics\/bty560","volume":"34","author":"S Chen","year":"2018","unstructured":"Chen S, Zhou Y, Chen Y, Gu J. Fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics. 2018;34(17):i884\u201390.","journal-title":"Bioinformatics"},{"issue":"4","key":"8047_CR58","doi-asserted-by":"publisher","first-page":"357","DOI":"10.1038\/nmeth.3317","volume":"12","author":"D Kim","year":"2015","unstructured":"Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nat Methods. 2015;12(4):357\u201360.","journal-title":"Nat Methods"},{"issue":"3","key":"8047_CR59","doi-asserted-by":"publisher","first-page":"R22","DOI":"10.1186\/gb-2011-12-3-r22","volume":"12","author":"A Roberts","year":"2011","unstructured":"Roberts A, Trapnell C, Donaghey J, Rinn JL, Pachter L. Improving RNA-Seq expression estimates by correcting for fragment bias. Genome Biol. 2011;12(3):R22.","journal-title":"Genome Biol"},{"issue":"2","key":"8047_CR60","doi-asserted-by":"publisher","first-page":"166","DOI":"10.1093\/bioinformatics\/btu638","volume":"31","author":"S Anders","year":"2015","unstructured":"Anders S, Pyl PT, Huber W. HTSeq\u2013a python framework to work with high-throughput sequencing data. Bioinformatics. 2015;31(2):166\u20139.","journal-title":"Bioinformatics"},{"issue":"12","key":"8047_CR61","doi-asserted-by":"publisher","first-page":"550","DOI":"10.1186\/s13059-014-0550-8","volume":"15","author":"M Love","year":"2014","unstructured":"Love M, Huber W, Anders S. Moderated Estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 2014;15(12):550.","journal-title":"Genome Biol"},{"key":"8047_CR62","first-page":"1","volume":"64","author":"MDC Molinari","year":"2021","unstructured":"Molinari MDC, Fuganti-Pagliarini R, Mendon\u00e7a JA, Barbosa DD, Marin DR, Mertz-Henning LM, Nepomuceno AL. Transcriptome analysis using RNA-Seq from experiments with and without biological replicates: a review. Revista De Ci\u00eancias Agr\u00e1rias\/Amazonian J Agricultural Environ Sci. 2021;64:1\u201313.","journal-title":"Revista De Ci\u00eancias Agr\u00e1rias\/Amazonian J Agricultural Environ Sci"},{"issue":"9","key":"8047_CR63","doi-asserted-by":"publisher","first-page":"e0184129","DOI":"10.1371\/journal.pone.0184129","volume":"12","author":"L Chen","year":"2017","unstructured":"Chen L, Zhang Y, Wang S, Zhang Y, Huang T, Cai Y. Prediction and analysis of essential genes using the enrichments of gene ontology and KEGG pathways. PLoS ONE. 2017;12(9):e0184129.","journal-title":"PLoS ONE"},{"key":"8047_CR64","doi-asserted-by":"publisher","first-page":"D480","DOI":"10.1093\/nar\/gkm882","volume":"36","author":"M Kanehisa","year":"2008","unstructured":"Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y. KEGG for linking genomes to life and the environment. Nucleic Acids Res. 2008;36:D480\u20134.","journal-title":"Nucleic Acids Res"},{"issue":"13","key":"8047_CR65","doi-asserted-by":"publisher","first-page":"2062","DOI":"10.3390\/plants14132062","volume":"14","author":"P Huang","year":"2025","unstructured":"Huang P, Niu K, Chai J, Wang W, Ma Y, Cao Y, Zhao G. Genome-Wide identification of PP2C gene family in oat (Avena sativa L.) and its functional analyses in response to ABA and abiotic stresses. Plants. 2025;14(13):2062.","journal-title":"Plants"},{"issue":"2","key":"8047_CR66","first-page":"217","volume":"33","author":"T Yang","year":"2013","unstructured":"Yang T, Sun S, Gao S, Tang Y, Zhao C. Cloning of AsRBP1 gene from oat (Avena sterilis) and analysis on its expressions to stresses. J Triticeae Crops. 2013;33(2):217\u201323.","journal-title":"J Triticeae Crops"},{"issue":"8","key":"8047_CR67","doi-asserted-by":"publisher","first-page":"1194","DOI":"10.1016\/j.molp.2020.06.009","volume":"13","author":"C Chen","year":"2020","unstructured":"Chen C, Chen H, Zhang Y, Thomas HR, Frank MH, He Y, Xia R. TBtools: an integrative toolkit developed for interactive analyses of big biological data. Mol Plant. 2020;13(8):1194\u2013202.","journal-title":"Mol Plant"},{"issue":"10","key":"8047_CR68","doi-asserted-by":"publisher","first-page":"e2411164122","DOI":"10.1073\/pnas.2411164122","volume":"122","author":"D Liu","year":"2025","unstructured":"Liu D, He J, Li Q, Zhang X, Wang Y, Sun Q, Wang W, Zhang M, Wang Y, Xu H, Fang L, Jiang L, Liu S, Chen L, Tian Y, Liu X, Wang R, Zhang Z, Chern M, Dong X, Wang H, Liu Y, Ronald PC, Wan J. A WRKY transcription factor confers broad-spectrum resistance to biotic stresses and yield stability in rice. Proc Natl Acad Sci USA. 2025;122(10):e2411164122.","journal-title":"Proc Natl Acad Sci USA"},{"issue":"3","key":"8047_CR69","doi-asserted-by":"publisher","first-page":"1151","DOI":"10.1016\/j.bbrc.2012.12.019","volume":"430","author":"H Sun","year":"2013","unstructured":"Sun H, Li Y, Feng S, Zou W, Guo K, Fan C, Si S, Peng L. Analysis of five rice 4-coumarate:coenzyme A ligase enzyme activity and stress response for potential roles in lignin and flavonoid biosynthesis in rice. Biochem Biophys Res Commun. 2013;430(3):1151\u20136.","journal-title":"Biochem Biophys Res Commun"},{"issue":"40","key":"8047_CR70","first-page":"1206","volume":"120","author":"L Civardi","year":"1999","unstructured":"Civardi L, Rigau J, Puigdom\u00e8nech P. Nucleotide sequence of two cDNAs coding for Caffeoyl-coenzyme A O-Methyltransferase (CCoAOMT) and study of their expression in Zea Mays. Plant Physiol. 1999;120(40):1206\u20131206.","journal-title":"Plant Physiol"},{"issue":"3","key":"8047_CR71","doi-asserted-by":"publisher","first-page":"661","DOI":"10.1111\/nph.12913","volume":"204","author":"J Muhlemann","year":"2014","unstructured":"Muhlemann J, Woodworth B, Morgan J, Dudareva N. The monolignol pathway contributes to the biosynthesis of volatile phenylpropenes in flowers. New Phytol. 2014;204(3):661\u201370.","journal-title":"New Phytol"},{"issue":"6913","key":"8047_CR72","doi-asserted-by":"publisher","first-page":"316","DOI":"10.1038\/nature01183","volume":"420","author":"Q Feng","year":"2002","unstructured":"Feng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y, Hu X, Jia P, Zhang Y, Zhao Q, Ying K, Yu S, Tang Y, Weng Q, Zhang L, Lu Y, Mu J, Lu Y, Zhang LS, Yu Z, Fan D, Liu X, Lu T, Li C, Wu Y, Sun T, Lei H, Li T, Hu H, Guan J, Wu M, Zhang R, Zhou B, Chen Z, Chen L, Jin Z, Wang R, Yin H, Cai Z, Ren S, Lv G, Gu W, Zhu G, Tu Y, Jia J, Zhang Y, Chen J, Kang H, Chen X, Shao C, Sun Y, Hu Q, Zhang X, Zhang W, Wang L, Ding C, Sheng H, Gu J, Chen S, Ni L, Zhu F, Chen W, Lan L, Lai Y, Cheng Z, Gu M, Jiang J, Li J, Hong G, Xue Y, Han B. Sequence and analysis of rice chromosome 4. Nature. 2002;420(6913):316\u201320.","journal-title":"Nature"},{"issue":"1","key":"8047_CR73","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1104\/pp.103.022442","volume":"133","author":"K Tanaka","year":"2003","unstructured":"Tanaka K, Murata K, Yamazaki M, Onosato K, Miyao A, Hirochika H. Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall. Plant Physiol. 2003;133(1):73\u201383.","journal-title":"Plant Physiol"},{"issue":"2","key":"8047_CR74","doi-asserted-by":"publisher","first-page":"kiaf016","DOI":"10.1093\/plphys\/kiaf016","volume":"197","author":"Q Li","year":"2025","unstructured":"Li Q, Liu Z, Jiang Z, Jia M, Hou Z, Dou D, Yu J. Phenylalanine metabolism-dependent lignification confers rhizobacterium-induced plant resistance. Plant Physiol. 2025;197(2):kiaf016.","journal-title":"Plant Physiol"},{"issue":"11","key":"8047_CR75","doi-asserted-by":"publisher","first-page":"799","DOI":"10.1038\/s41570-024-00652-9","volume":"8","author":"CT Palumbo","year":"2024","unstructured":"Palumbo CT, Ouellette ET, Zhu J, Rom\u00e1n-Leshkov Y, Stahl SS, Beckham GT. Accessing monomers from lignin through carbon-carbon bond cleavage. Nat Reviews Chem. 2024;8(11):799\u2013816.","journal-title":"Nat Reviews Chem"},{"key":"8047_CR76","doi-asserted-by":"publisher","first-page":"275","DOI":"10.1007\/s10681-016-1768-1","volume":"212","author":"Y Zhang","year":"2016","unstructured":"Zhang Y, Xu W, Wang H, Fang Y, Dong H, Qi X. Progress in improving stem lodging resistance of Chinese wheat cultivars. Euphytica. 2016;212:275\u201386.","journal-title":"Euphytica"},{"issue":"1","key":"8047_CR77","doi-asserted-by":"publisher","first-page":"601","DOI":"10.1186\/s12870-023-04622-z","volume":"23","author":"X Li","year":"2013","unstructured":"Li X, Li Y, Wei A, Wang Z, Huang H, Huang Q, Yang L, Gao Y, Zhu G, Liu Q, Li Y, Wei S, Wei D. Integrated transcriptomic and proteomic analyses of two sugarcane (Saccharum officinarum Linn.) varieties differing in their lodging tolerance. BMC Plant Biol. 2013;23(1):601.","journal-title":"BMC Plant Biol"},{"key":"8047_CR78","doi-asserted-by":"publisher","first-page":"1230792","DOI":"10.3389\/fpls.2023.1230792","volume":"14","author":"Y Bai","year":"2023","unstructured":"Bai Y, Zhao X, Yao X, Yao Y, Li X, Hou L, An L, Wu K, Wang Z. Comparative transcriptome analysis Ofmajor lodging resistant factors in hulless barley. Front Plant Sci. 2023;14:1230792.","journal-title":"Front Plant Sci"},{"issue":"1","key":"8047_CR79","doi-asserted-by":"publisher","first-page":"49","DOI":"10.1186\/s12870-022-03435-w","volume":"22","author":"L Xie","year":"2022","unstructured":"Xie L, Wen D, Wu C, Zhang C. Transcriptome analysis reveals the mechanism of internode development affecting maize stalk strength. BMC Plant Biol. 2022;22(1):49.","journal-title":"BMC Plant Biol"},{"issue":"6","key":"8047_CR80","doi-asserted-by":"publisher","first-page":"794","DOI":"10.1017\/S0021859624000091","volume":"161","author":"E Mengistie","year":"2023","unstructured":"Mengistie E, McDonald AG. Effects of cell wall components on lodging resistance in cereal crops: a review. J Agricultural Sci. 2023;161(6):794\u2013807.","journal-title":"J Agricultural Sci"},{"issue":"6","key":"8047_CR81","doi-asserted-by":"publisher","first-page":"1065","DOI":"10.4141\/cjps2011-033","volume":"91","author":"J Yao","year":"2011","unstructured":"Yao J, Ma H, Zhang P, Ren L, Yang X, Yao G, Zhang P, Zhou M. Inheritance of stem strength and its correlations with culm morphological traits in wheat (Triticum aestivum L). Can J Plant Sci. 2011;91(6):1065\u201370.","journal-title":"Can J Plant Sci"},{"issue":"5","key":"8047_CR82","doi-asserted-by":"publisher","first-page":"508","DOI":"10.1270\/jsbbs.18050","volume":"68","author":"S Liu","year":"2018","unstructured":"Liu S, Huang Y, Xu H, Zhao M, Xu Q, Li F. The key cell wall polymer lignin can lead to a genetic enhancement of lodging resistance in rice, thereby affecting the characteristics of the stem. Breed Sci. 2018;68(5):508\u201315.","journal-title":"Breed Sci"},{"issue":"4","key":"8047_CR83","doi-asserted-by":"publisher","first-page":"621","DOI":"10.3724\/SP.J.1006.2019.81064","volume":"45","author":"K Wang","year":"2019","unstructured":"Wang K, Zhao X, Yao X, Yao Y, Bai Y, Wu K. Relationship of stem characteristics and lignin synthesis with lodging resistance of hulless barley. Acta Agron Sinica. 2019;45(4):621\u20137.","journal-title":"Acta Agron Sinica"},{"issue":"11","key":"8047_CR84","first-page":"2261","volume":"54","author":"X Wang","year":"2021","unstructured":"Wang X, Song W, Zhang R, Chen Y, Sun X, Zhao J. Genetic research advances on maize stalk lodging resistance. Scientia Agricultura Sinica. 2021;54(11):2261\u201372.","journal-title":"Scientia Agricultura Sinica"},{"issue":"2","key":"8047_CR85","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1071\/CP20326","volume":"72","author":"P Song","year":"2021","unstructured":"Song P, Wang X, Wang X, Zhou F, Xu X, Wu B, Yao J, Lyu D, Yang M, Song X, Sun D. Application of 50K chip-based genetic map to QTL mapping of stem-related traits in wheat. Crop Pasture Sci. 2021;72(2):105\u201312.","journal-title":"Crop Pasture Sci"},{"issue":"6","key":"8047_CR86","doi-asserted-by":"publisher","first-page":"1237","DOI":"10.1111\/tpj.16107","volume":"113","author":"Y Tang","year":"2023","unstructured":"Tang Y, Lu L, Sheng Z, Zhao D, Tao J. An R2R3-MYB network modulates stem strength by regulating lignin biosynthesis and secondary cell wall thickening in herbaceous peony. Plant Journal: Cell Mol Biology. 2023;113(6):1237\u201358.","journal-title":"Plant Journal: Cell Mol Biology"},{"issue":"5","key":"8047_CR87","doi-asserted-by":"publisher","first-page":"931","DOI":"10.1111\/pbi.14004","volume":"21","author":"J Ning","year":"2023","unstructured":"Ning J, He W, Wu L, Chang L, Hu M, Fu Y, Sun H, Gu P, Ndjiondjop M, Liu F, Sun C, Zhu Z. The MYB transcription factor seed shattering 11 controls seed shattering by repressing lignin synthesis in African rice. Plant Biotechnol J. 2023;21(5):931\u201342.","journal-title":"Plant Biotechnol J"},{"issue":"1","key":"8047_CR88","doi-asserted-by":"publisher","first-page":"248","DOI":"10.1105\/tpc.108.063321","volume":"21","author":"J Zhou","year":"2009","unstructured":"Zhou J, Lee C, Zhong R, Ye Z. MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis. Plant Cell. 2009;21(1):248\u201366.","journal-title":"Plant Cell"},{"issue":"11","key":"8047_CR89","doi-asserted-by":"publisher","first-page":"2993","DOI":"10.1105\/tpc.105.036004","volume":"17","author":"N Mitsuda","year":"2005","unstructured":"Mitsuda N, Seki M, Shinozaki K, Ohme-Takagi M. The NAC transcription factors NST1 and NST2 of Arabidopsis regulate secondary wall thickenings and are required for anther dehiscence. Plant Cell. 2005;17(11):2993\u20133006.","journal-title":"Plant Cell"},{"issue":"4","key":"8047_CR90","doi-asserted-by":"publisher","first-page":"652","DOI":"10.1111\/j.1365-313X.2008.03533.x","volume":"55","author":"M Yamaguchi","year":"2008","unstructured":"Yamaguchi M, Kubo M, Fukuda H, Demura T. Vascular-related NAC-DOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots. Plant Journal: Cell Mol Biology. 2008;55(4):652\u201364.","journal-title":"Plant Journal: Cell Mol Biology"}],"container-title":["BMC Plant Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/article\/10.1186\/s12870-025-08047-8","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12870-025-08047-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12870-025-08047-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,2,3]],"date-time":"2026-02-03T14:03:22Z","timestamp":1770127402000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1186\/s12870-025-08047-8"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,1,5]]},"references-count":90,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2026,12]]}},"alternative-id":["8047"],"URL":"https:\/\/doi.org\/10.1186\/s12870-025-08047-8","relation":{},"ISSN":["1471-2229"],"issn-type":[{"value":"1471-2229","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,1,5]]},"assertion":[{"value":"26 August 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"23 December 2025","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"5 January 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"Not applicable.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare no competing interests.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"217"}}