{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,23]],"date-time":"2026-10-23T20:38:35Z","timestamp":1792787915400,"version":"4.5.0"},"reference-count":28,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2024,7,8]],"date-time":"2024-07-08T00:00:00Z","timestamp":1720396800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2024,7,8]],"date-time":"2024-07-08T00:00:00Z","timestamp":1720396800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"funder":[{"name":"Changshu Health Commission Science and Technology Program of 2022","award":["CSWSQ202203"],"award-info":[{"award-number":["CSWSQ202203"]}]},{"name":"Changshu Science and Technology Program of 2023","award":["CY202301"],"award-info":[{"award-number":["CY202301"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Cardiovasc Disord"],"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Objective<\/jats:title>\n                    <jats:p>We aimed to investigate key differentially expressed immune related genes in persistent atrial fibrillation.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Methods<\/jats:title>\n                    <jats:p>\n                      Gene expression profiles were downloaded from Gene Expression Omnibus (GEO) using \u201c\n                      <jats:italic>GEO query<\/jats:italic>\n                      \u201d package. \u201c\n                      <jats:italic>limma<\/jats:italic>\n                      \u201d package and \u201c\n                      <jats:italic>sva<\/jats:italic>\n                      \u201d package were used to conduct normalization and eliminate batch effects, respectively. We screened out differentially expressed genes (DEGs) based on \u201c\n                      <jats:italic>limma<\/jats:italic>\n                      \u201d package with the standard of |log fold change (FC)| \u2265 1.5 and false discovery rate (FDR)\u2009&lt;\u20090.05. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses of DEGs were performed by \u201c\n                      <jats:italic>clusterProfler<\/jats:italic>\n                      \u201d package. We further applied LASSO to select key DEGs, and intersected key DEGs with immune related genes from ImmPort database. The ROC curve of each DEIRG was constructed to evaluate its diagnostic efficiency for AF.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>\n                      A total of 103 DEGs we were screened out, of them, 48 genes were down-regulated and 55 genes were up-regulated. Result of functional enrichment analysis show that, most of DEGs were related to immune response, inflammation, and oxidative stress. Ultimately,\n                      <jats:italic>CYBB<\/jats:italic>\n                      ,\n                      <jats:italic>RORB<\/jats:italic>\n                      ,\n                      <jats:italic>S100A12<\/jats:italic>\n                      , and\n                      <jats:italic>CHGB<\/jats:italic>\n                      were determined as key DEIRGs, each of which displayed a favor efficiency for diagnosing persistent AF.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Conclusion<\/jats:title>\n                    <jats:p>\n                      <jats:italic>CYBB<\/jats:italic>\n                      ,\n                      <jats:italic>RORB<\/jats:italic>\n                      ,\n                      <jats:italic>S100A12<\/jats:italic>\n                      , and\n                      <jats:italic>CHGB<\/jats:italic>\n                      were identified as key DEIRGs in persistent AF, and future studies are needed to further explore the underlying roles of\n                      <jats:italic>CYBB<\/jats:italic>\n                      ,\n                      <jats:italic>RORB<\/jats:italic>\n                      ,\n                      <jats:italic>S100A12<\/jats:italic>\n                      , and\n                      <jats:italic>CHGB<\/jats:italic>\n                      in persistent AF.\n                    <\/jats:p>\n                  <\/jats:sec>","DOI":"10.1186\/s12872-024-04007-6","type":"journal-article","created":{"date-parts":[[2024,7,8]],"date-time":"2024-07-08T05:11:42Z","timestamp":1720415502000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["Identification of key differentially expressed immune related genes in patients with persistent atrial fibrillation: an integrated bioinformation analysis"],"prefix":"10.1186","volume":"24","author":[{"given":"Yijing","family":"Tao","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tonghui","family":"Feng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lucien","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Leng","family":"Han","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2024,7,8]]},"reference":[{"issue":"12","key":"4007_CR1","doi-asserted-by":"publisher","first-page":"1847","DOI":"10.1016\/j.cjca.2020.09.001","volume":"36","author":"JG Andrade","year":"2020","unstructured":"Andrade JG, Aguilar M, Atzema C, et al. The 2020 Canadian cardiovascular society\/Canadian heart rhythm society comprehensive guidelines for the management of atrial fibrillation[J]. Can J Cardiol. 2020;36(12):1847\u2013948. https:\/\/doi.org\/10.1016\/j.cjca.2020.09.001.","journal-title":"Can J Cardiol"},{"key":"4007_CR2","doi-asserted-by":"publisher","unstructured":"Chen Z, Liu P, Xia X, et al. The underlying mechanisms of cold exposure-induced ischemic stroke. Sci Total Environ. 2022;e155514. https:\/\/doi.org\/10.1016\/j.scitotenv.2022.155514.","DOI":"10.1016\/j.scitotenv.2022.155514"},{"issue":"4","key":"4007_CR3","doi-asserted-by":"publisher","first-page":"505","DOI":"10.1016\/j.ihj.2016.12.006","volume":"69","author":"G Sharma","year":"2017","unstructured":"Sharma G, Shetkar S, Bhasin A, et al. High sensitive C-reactive protein and interleukin 6 in atrial fibrillation with rheumatic mitral stenosis from Indian cohort. Indian Heart J. 2017;69(4):505\u201311. https:\/\/doi.org\/10.1016\/j.ihj.2016.12.006.","journal-title":"Indian Heart J"},{"issue":"1","key":"4007_CR4","doi-asserted-by":"publisher","first-page":"1685","DOI":"10.1038\/s41598-020-58797-8","volume":"10","author":"C Hohmann","year":"2020","unstructured":"Hohmann C, Pfister R, Mollenhauer M, et al. Inflammatory cell infiltration in left atrial appendageal tissues of patients with atrial fibrillation and sinus rhythm[J]. Sci Rep. 2020;10(1):1685. https:\/\/doi.org\/10.1038\/s41598-020-58797-8.","journal-title":"Sci Rep"},{"issue":"3","key":"4007_CR5","doi-asserted-by":"publisher","first-page":"603","DOI":"10.3390\/cancers12030603","volume":"12","author":"W Zhu","year":"2020","unstructured":"Zhu W, Xie L, Han J, et al. The application of deep learning in cancer prognosis prediction[J]. Cancers (Basel). 2020;12(3):603. https:\/\/doi.org\/10.3390\/cancers12030603.","journal-title":"Cancers (Basel)"},{"issue":"4","key":"4007_CR6","doi-asserted-by":"publisher","first-page":"247","DOI":"10.1080\/14779072.2017.1299005","volume":"15","author":"S Thanigaimani","year":"2017","unstructured":"Thanigaimani S, Lau DH, Agbaedeng T, et al. Molecular mechanisms of atrial fibrosis: implications for the clinic. Expert Rev Cardiovasc Ther. 2017;15(4):247\u201356. https:\/\/doi.org\/10.1080\/14779072.2017.1299005.","journal-title":"Expert Rev Cardiovasc Ther"},{"key":"4007_CR7","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1016\/j.trsl.2017.03.004","volume":"184","author":"R Do\u00f1ate Puertas","year":"2017","unstructured":"Do\u00f1ate Puertas R, Meugnier E, Romestaing C, et al. Atrial fibrillation is associated with hypermethylation in human left atrium, and treatment with decitabine reduces atrial tachyarrhythmias in spontaneously hypertensive rats[J]. Transl Res. 2017;184:57\u201367. https:\/\/doi.org\/10.1016\/j.trsl.2017.03.004.","journal-title":"Transl Res"},{"issue":"3","key":"4007_CR8","doi-asserted-by":"publisher","first-page":"1299","DOI":"10.1159\/000490225","volume":"47","author":"R Zou","year":"2018","unstructured":"Zou R, Yang M, Shi W, et al. Analysis of genes involved in Persistent Atrial Fibrillation: comparisons of \u2018Trigger\u2019 and \u2018Substrate\u2019 differences. Cell Physiol Biochem. 2018;47(3):1299\u2013309. https:\/\/doi.org\/10.1159\/000490225.","journal-title":"Cell Physiol Biochem"},{"key":"4007_CR9","doi-asserted-by":"publisher","first-page":"104","DOI":"10.1016\/j.ijcard.2016.07.103","volume":"222","author":"F-C Tsai","year":"2016","unstructured":"Tsai F-C, Lin Y-C, Chang S-H, et al. Differential left-to-right atria gene expression ratio in human sinus rhythm and atrial fibrillation: implications for arrhythmogenesis and thrombogenesis[J]. Int J Cardiol. 2016;222:104\u201312. https:\/\/doi.org\/10.1016\/j.ijcard.2016.07.103.","journal-title":"Int J Cardiol"},{"key":"4007_CR10","doi-asserted-by":"publisher","unstructured":"\u00c7ubuk\u00e7uo\u011flu Deniz G, Durdu S, Do\u011fan Y et al. Molecular signatures of human chronic atrial fibrillation in primary mitral regurgitation[J]. Cardiovasc Ther. 2021;2021:5516185. https:\/\/doi.org\/10.1155\/2021\/5516185.","DOI":"10.1155\/2021\/5516185"},{"issue":"5","key":"4007_CR11","doi-asserted-by":"publisher","first-page":"453","DOI":"10.1038\/nmeth.3337","volume":"12","author":"AM Newman","year":"2015","unstructured":"Newman AM, Liu CL, Green MR, et al. Robust enumeration of cell subsets from tissue expression profiles[J]. Nat Methods. 2015;12(5):453\u20137. https:\/\/doi.org\/10.1038\/nmeth.3337.","journal-title":"Nat Methods"},{"issue":"2\u20133","key":"4007_CR12","doi-asserted-by":"publisher","first-page":"234","DOI":"10.1007\/s12026-014-8516-1","volume":"58","author":"S Bhattacharya","year":"2014","unstructured":"Bhattacharya S, Andorf S, Gomes L, et al. ImmPort: disseminating data to the public for the future of immunology[J]. Immunol Res. 2014;58(2\u20133):234\u20139. https:\/\/doi.org\/10.1007\/s12026-014-8516-1.","journal-title":"Immunol Res"},{"issue":"3","key":"4007_CR13","doi-asserted-by":"publisher","first-page":"1423","DOI":"10.3390\/ijms22031423","volume":"22","author":"Y D\u2019alessandra","year":"2021","unstructured":"D\u2019alessandra Y, Chiesa M, Vigorelli V, et al. Diabetes induces a transcriptional signature in bone marrow-derived CD34 hematopoietic stem cells predictive of their progeny dysfunction[J]. Int J Mol Sci. 2021;22(3):1423. https:\/\/doi.org\/10.3390\/ijms22031423.","journal-title":"Int J Mol Sci"},{"issue":"4","key":"4007_CR14","doi-asserted-by":"publisher","first-page":"5561","DOI":"10.3892\/mmr.2017.7216","volume":"16","author":"R Wang","year":"2017","unstructured":"Wang R, Wei B, Wei J, et al. Cysteine-rich 61-associated gene expression profile alterations in human glioma cells[J]. Mol Med Rep. 2017;16(4):5561\u20137. https:\/\/doi.org\/10.3892\/mmr.2017.7216.","journal-title":"Mol Med Rep"},{"issue":"20","key":"4007_CR15","doi-asserted-by":"publisher","first-page":"2227","DOI":"10.1161\/CIRCULATIONAHA.118.035202","volume":"138","author":"C Yao","year":"2018","unstructured":"Yao C, Veleva T, Scott L, et al. Enhanced cardiomyocyte NLRP3 inflammasome signaling promotes atrial fibrillation[J]. Circulation. 2018;138(20):2227\u201342. https:\/\/doi.org\/10.1161\/CIRCULATIONAHA.118.035202.","journal-title":"Circulation"},{"key":"4007_CR16","doi-asserted-by":"publisher","first-page":"174622","DOI":"10.1016\/j.ejphar.2021.174622","volume":"913","author":"J Fang","year":"2021","unstructured":"Fang J, Kong B, Shuai W, et al. Ferroportin-mediated ferroptosis involved in new-onset atrial fibrillation with LPS-induced endotoxemia[J]. Eur J Pharmacol. 2021;913:174622. https:\/\/doi.org\/10.1016\/j.ejphar.2021.174622.","journal-title":"Eur J Pharmacol"},{"issue":"6","key":"4007_CR17","doi-asserted-by":"publisher","first-page":"1315","DOI":"10.1111\/jce.14475","volume":"31","author":"M Yano","year":"2020","unstructured":"Yano M, Egami Y, Yanagawa K, et al. Comparison of myocardial injury and inflammation after pulmonary vein isolation for paroxysmal atrial fibrillation between radiofrequency catheter ablation and cryoballoon ablation. J Cardiovasc Electrophysiol. 2020;31(6):1315\u201322. https:\/\/doi.org\/10.1111\/jce.14475.","journal-title":"J Cardiovasc Electrophysiol"},{"key":"4007_CR18","doi-asserted-by":"publisher","first-page":"83","DOI":"10.1146\/annurev-physiol-031720-085307","volume":"83","author":"J Heijman","year":"2021","unstructured":"Heijman J, Linz D, Schotten U. Dynamics of Atrial Fibrillation mechanisms and comorbidities. Annu Rev Physiol. 2021;83:83\u2013106. https:\/\/doi.org\/10.1146\/annurev-physiol-031720-085307.","journal-title":"Annu Rev Physiol"},{"issue":"10","key":"4007_CR19","doi-asserted-by":"publisher","first-page":"719","DOI":"10.1038\/s41551-018-0305-z","volume":"2","author":"K-H Yu","year":"2018","unstructured":"Yu K-H, Beam AL, Kohane IS. Artificial intelligence in healthcare[J]. Nat Biomed Eng. 2018;2(10):719\u201331. https:\/\/doi.org\/10.1038\/s41551-018-0305-z.","journal-title":"Nat Biomed Eng"},{"issue":"10","key":"4007_CR20","doi-asserted-by":"publisher","first-page":"e005595","DOI":"10.1161\/CIRCOUTCOMES.118.005595","volume":"12","author":"L Han","year":"2019","unstructured":"Han L, Askari M, Altman RB, et al. Atrial fibrillation burden signature and near-term prediction of stroke: a machine learning analysis[J]. Circ Cardiovasc Qual Outcomes. 2019;12(10):e005595. https:\/\/doi.org\/10.1161\/CIRCOUTCOMES.118.005595.","journal-title":"Circ Cardiovasc Qual Outcomes"},{"key":"4007_CR21","doi-asserted-by":"publisher","first-page":"1314","DOI":"10.3389\/fonc.2019.01314","volume":"9","author":"M Zhang","year":"2019","unstructured":"Zhang M, Zhu K, Pu H, et al. An immune-related signature predicts survival in patients with lung adenocarcinoma[J]. Front Oncol. 2019;9:1314. https:\/\/doi.org\/10.3389\/fonc.2019.01314.","journal-title":"Front Oncol"},{"issue":"1","key":"4007_CR22","doi-asserted-by":"publisher","first-page":"442","DOI":"10.1186\/s12967-020-02522-6","volume":"18","author":"W Ma","year":"2020","unstructured":"Ma W, Zhao F, Yu X, et al. Immune-related lncRNAs as predictors of survival in breast cancer: a prognostic signature[J]. J Transl Med. 2020;18(1):442. https:\/\/doi.org\/10.1186\/s12967-020-02522-6.","journal-title":"J Transl Med"},{"key":"4007_CR23","doi-asserted-by":"publisher","first-page":"106027","DOI":"10.1016\/j.phrs.2021.106027","volume":"175","author":"C Liu","year":"2022","unstructured":"Liu C, Ma N, Guo Z, et al. Relevance of mitochondrial oxidative stress to arrhythmias: innovative concepts to target treatments. Pharmacol Res. 2022;175:106027. https:\/\/doi.org\/10.1016\/j.phrs.2021.106027.","journal-title":"Pharmacol Res"},{"issue":"1","key":"4007_CR24","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1093\/cvr\/cvu176","volume":"104","author":"S Saito","year":"2014","unstructured":"Saito S, Teshima Y, Fukui A, et al. Glucose fluctuations increase the incidence of atrial fibrillation in diabetic rats[J]. Cardiovasc Res. 2014;104(1):5\u201314. https:\/\/doi.org\/10.1093\/cvr\/cvu176.","journal-title":"Cardiovasc Res"},{"key":"4007_CR25","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1016\/j.yjmcc.2019.08.006","volume":"135","author":"W-J Chen","year":"2019","unstructured":"Chen W-J, Chang S-H, Chan Y-H, et al. Tachycardia-induced CD44\/NOX4 signaling is involved in the development of atrial remodeling[J]. J Mol Cell Cardiol. 2019;135:67\u201378. https:\/\/doi.org\/10.1016\/j.yjmcc.2019.08.006.","journal-title":"J Mol Cell Cardiol"},{"issue":"23","key":"4007_CR26","doi-asserted-by":"publisher","first-page":"10415","DOI":"10.1021\/acs.jmedchem.8b00392","volume":"61","author":"ME Schnute","year":"2018","unstructured":"Schnute ME, Wennerst\u00e5l M, Alley J, et al. Discovery of 3-Cyano- N-(3-(1-isobutyrylpiperidin-4-yl)-1-methyl-4-(trifluoromethyl)-1 H-pyrrolo[2,3- b]pyridin-5-yl)benzamide: a potent, selective, and orally bioavailable retinoic acid receptor-related orphan receptor C2 inverse agonist[J]. J Med Chem. 2018;61(23):10415\u201339. https:\/\/doi.org\/10.1021\/acs.jmedchem.8b00392.","journal-title":"J Med Chem"},{"key":"4007_CR27","doi-asserted-by":"publisher","first-page":"262","DOI":"10.1016\/j.freeradbiomed.2021.11.022","volume":"178","author":"PT Williams","year":"2022","unstructured":"Williams PT. Quantile-specific heritability of 8-isoprostane and the modulating effects of smoking, alcohol, cardiovascular disease and diabetes on 8-isoprostane-gene interactions. Free Radic Biol Med. 2022;178:262\u201370. https:\/\/doi.org\/10.1016\/j.freeradbiomed.2021.11.022.","journal-title":"Free Radic Biol Med"},{"key":"4007_CR28","doi-asserted-by":"publisher","first-page":"9","DOI":"10.1007\/978-3-030-24100-1_2","volume":"1168","author":"S Morganti","year":"2019","unstructured":"Morganti S, Tarantino P, Ferraro E, et al. Next generation sequencing (NGS): a revolutionary technology in pharmacogenomics and personalized medicine in cancer[J]. Adv Exp Med Biol. 2019;1168:9\u201330. https:\/\/doi.org\/10.1007\/978-3-030-24100-1_2.","journal-title":"Adv Exp Med Biol"}],"container-title":["BMC Cardiovascular Disorders"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12872-024-04007-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1186\/s12872-024-04007-6\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12872-024-04007-6.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,7,8]],"date-time":"2024-07-08T05:13:30Z","timestamp":1720415610000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmccardiovascdisord.biomedcentral.com\/articles\/10.1186\/s12872-024-04007-6"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,7,8]]},"references-count":28,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2024,12]]}},"alternative-id":["4007"],"URL":"https:\/\/doi.org\/10.1186\/s12872-024-04007-6","relation":{},"ISSN":["1471-2261"],"issn-type":[{"value":"1471-2261","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,7,8]]},"assertion":[{"value":"14 March 2024","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"24 June 2024","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"8 July 2024","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"All authors have approved the manuscript and agreed for publication in this journal.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare no conflicts of interest.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}},{"value":"Not applicable.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethical approval"}},{"value":"Not applicable.","order":5,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent to participate"}}],"article-number":"346"}}