{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,19]],"date-time":"2026-08-19T19:53:11Z","timestamp":1787169191410,"version":"build-2736575974"},"reference-count":16,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2017,2,20]],"date-time":"2017-02-20T00:00:00Z","timestamp":1487548800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2017,2,20]],"date-time":"2017-02-20T00:00:00Z","timestamp":1487548800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["5R01AI039129"],"award-info":[{"award-number":["5R01AI039129"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Infect Dis"],"published-print":{"date-parts":[[2017,12]]},"DOI":"10.1186\/s12879-017-2252-9","type":"journal-article","created":{"date-parts":[[2017,2,20]],"date-time":"2017-02-20T07:57:39Z","timestamp":1487577459000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":26,"title":["Genetic Characterization of Vibrio cholerae O1 isolates from outbreaks between 2011 and 2015 in Tanzania"],"prefix":"10.1186","volume":"17","author":[{"given":"Yazid","family":"Kachwamba","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"A. A.","family":"Mohammed","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"H.","family":"Lukupulo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"L.","family":"Urio","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M.","family":"Majigo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"F.","family":"Mosha","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M.","family":"Matonya","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"R.","family":"Kishimba","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J.","family":"Mghamba","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J.","family":"Lusekelo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"S.","family":"Nyanga","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M.","family":"Almeida","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"S.","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"D.","family":"Domman","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"S.Y.","family":"Massele","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3974-3752","authenticated-orcid":false,"given":"O. C.","family":"Stine","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2017,2,20]]},"reference":[{"issue":"17","key":"2252_CR1","doi-asserted-by":"publisher","first-page":"4367","DOI":"10.1128\/JB.00698-10","volume":"192","author":"EA Kendall","year":"2010","unstructured":"Kendall EA, Chowdhury F, Begum Y, Khan AI, Li S, Thierer JH, et al. Relatedness of Vibrio cholerae O1 \/ O139 Isolates from Patients and Their Household Contacts. Determined by Multilocus J Bacteriol. 2010;192(17):4367\u201376.","journal-title":"Determined by Multilocus J Bacteriol"},{"key":"2252_CR2","unstructured":"Wash I. World health organization: weekly epidemiological record. Geneva: 2015."},{"key":"2252_CR3","unstructured":"World Health Organization. Cholera Country Profile\u202f: United Republic of Tanzania. 2008."},{"issue":"1","key":"2252_CR4","doi-asserted-by":"publisher","first-page":"54","DOI":"10.3201\/eid2001.130796","volume":"20","author":"SM Rashed","year":"2014","unstructured":"Rashed SM, Azman AS, Alam M, Li S, Sack DA, Morris JG, et al. Genetic variation of Vibrio cholerae during outbreaks, Bangladesh, 2010\u20132011. Emerg Infect Dis. 2014;20(1):54\u201360.","journal-title":"Emerg Infect Dis"},{"issue":"5","key":"2252_CR5","doi-asserted-by":"publisher","first-page":"455","DOI":"10.1089\/cmb.2012.0021","volume":"19","author":"A Bankevich","year":"2012","unstructured":"Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, et al. SPAdes: a New genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 2012;19(5):455\u201377.","journal-title":"J Comput Biol"},{"issue":"75","key":"2252_CR6","first-page":"1","volume":"9","author":"RK Aziz","year":"2008","unstructured":"Aziz RK, Bartels D, Best AA, Dejongh M, Disz T, Edwards RA, et al. The RAST server : rapid annotations using subsystems technology. BMC Genomics. 2008;9(75):1\u201315.","journal-title":"BMC Genomics"},{"issue":"524","key":"2252_CR7","first-page":"1","volume":"15","author":"TJ Treangen","year":"2014","unstructured":"Treangen TJ, Ondov BD, Koren S, Phillippy AM. The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes. BMC Genome Biol. 2014;15(524):1\u201315.","journal-title":"BMC Genome Biol"},{"issue":"3","key":"2252_CR8","doi-asserted-by":"publisher","first-page":"e9490","DOI":"10.1371\/journal.pone.0009490","volume":"5","author":"MN Price","year":"2010","unstructured":"Price MN, Dehal PS, Arkin AP. FastTree 2--approximately maximum-likelihood trees for large alignments. PLoS One. 2010;5(3):e9490.","journal-title":"PLoS One"},{"key":"2252_CR9","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkw290","author":"I Letunic","year":"2016","unstructured":"Letunic I, Bork P. Interactive Tree Of Life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees. Nucleic Acids Res. 2016. doi:\n                    10.1093\/nar\/gkw290\n                    \n                  .","journal-title":"Nucleic Acids Res"},{"issue":"5964","key":"2252_CR10","first-page":"469","volume":"327","author":"SR Harris","year":"2010","unstructured":"Harris SR, Feil EJ, Holden MTG, Quail MA, Emma K, Chantratita N, et al. Europe PMC funders group evolution of MRSA during hospital transmission and intercontinental spread. Eur J Infect Dis Epidemiol Prev Control. 2010;327(5964):469\u201374.","journal-title":"Eur J Infect Dis Epidemiol Prev Control"},{"issue":"3","key":"2252_CR11","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1093\/nar\/gku1196","volume":"43","author":"NJ Croucher","year":"2015","unstructured":"Croucher NJ, Page AJ, Connor TR, Delaney AJ, Keane JA, Bentley SD, et al. Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins. Nucleic Acids Res. 2015;43(3):1\u201313.","journal-title":"Nucleic Acids Res"},{"issue":"9","key":"2252_CR12","doi-asserted-by":"publisher","first-page":"1312","DOI":"10.1093\/bioinformatics\/btu033","volume":"30","author":"A Stamatakis","year":"2014","unstructured":"Stamatakis A. RAxML version 8 : a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 2014;30(9):1312\u20133.","journal-title":"Bioinformatics"},{"issue":"7365","key":"2252_CR13","doi-asserted-by":"publisher","first-page":"462","DOI":"10.1038\/nature10392","volume":"477","author":"A Mutreja","year":"2011","unstructured":"Mutreja A, Kim DW, Thomson NR, Connor TR, Lee JH, Kariuki S, Croucher NJ, Choi SY, Harris SR, Lebens M, Niyogi SK, Kim EJ, Ramamurthy T, Chun J, Wood JL, Clemens JD, Czerkinsky C, Nair GB, Holmgren J, Parkhill J, Dougan G. Evidence for several waves of global transmission in the seventh cholera pandemic. Nature. 2011;477(7365):462\u20135.","journal-title":"Nature"},{"key":"2252_CR14","doi-asserted-by":"publisher","first-page":"116","DOI":"10.1093\/femsle\/fnw116","volume":"363","author":"MU Rashid","year":"2016","unstructured":"Rashid MU, Almeida M, Azman AS, Lindsay BR, Sack DA, Colwell RR, Huq A, Morris Jr JG, Alam M. Stine OC Comparison of inferred relatedness based on multilocus variable-number tandem-repeat analysis and whole genome sequencing of Vibrio cholerae O1. FEMS Microbiol Lett. 2016;363:116.","journal-title":"FEMS Microbiol Lett"},{"issue":"7","key":"2252_CR15","doi-asserted-by":"publisher","first-page":"e2981","DOI":"10.1371\/journal.pntd.0002981","volume":"8","author":"M Abd El Ghany","year":"2014","unstructured":"Abd El Ghany M, Chander J, Mutreja A, Rashid M, Hill-Cawthorne GA, Ali S, Naeem R, Thomson NR, Dougan G, Pain A. The population structure of Vibrio cholerae from the Chandigarh Region of Northern India. PLoS Negl Trop Dis. 2014;8(7):e2981.","journal-title":"PLoS Negl Trop Dis"},{"issue":"9","key":"2252_CR16","doi-asserted-by":"publisher","first-page":"e74829","DOI":"10.1371\/journal.pone.0074829","volume":"8","author":"J Kiiru","year":"2013","unstructured":"Kiiru J, Mutreja A, Mohamed AA, Kimani RW, Mwituria J, Sanaya RO, Muyodi J, Revathi G, Parkhill J, Thomson N, Dougan G, Kariuki S. A study on the geophylogeny of clinical and environmental Vibrio cholerae in Kenya. PLoS One. 2013;8(9):e74829.","journal-title":"PLoS One"}],"container-title":["BMC Infectious Diseases"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12879-017-2252-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s12879-017-2252-9\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12879-017-2252-9.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,14]],"date-time":"2020-05-14T07:16:40Z","timestamp":1589440600000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcinfectdis.biomedcentral.com\/articles\/10.1186\/s12879-017-2252-9"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,2,20]]},"references-count":16,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2017,12]]}},"alternative-id":["2252"],"URL":"https:\/\/doi.org\/10.1186\/s12879-017-2252-9","relation":{},"ISSN":["1471-2334"],"issn-type":[{"value":"1471-2334","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,2,20]]},"assertion":[{"value":"11 October 2016","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"8 February 2017","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"20 February 2017","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"157"}}