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In addition, some avian\n                      <jats:italic>E. coli<\/jats:italic>\n                      strains may have zoonotic potential, making poultry a possible source of infection for humans. Due to its extreme genetic diversity, this pathotype remains poorly defined. This study aimed to investigate the diversity of colibacillosis-associated\n                      <jats:italic>E. coli<\/jats:italic>\n                      isolates from Central European countries with a focus on the Czech Republic.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>\n                      Of 95 clinical isolates subjected to preliminary characterization, 32 were selected for whole-genome sequencing. A multi resistant phenotype was detected in a majority of the sequenced strains with the predominant resistance to \u03b2-lactams and quinolones being associated with TEM-type beta-lactamase genes and chromosomal\n                      <jats:italic>gyrA<\/jats:italic>\n                      mutations respectively. The phylogenetic analysis confirmed a great diversity of isolates, that were derived from nearly all phylogenetic groups, with predominace of B2, B1 and C phylogroups. Clusters of closely related isolates within ST23 (phylogroup C) and ST429 (phylogroup B2) indicated a possible local spread of these clones. Besides, the ST429 cluster carried\n                      <jats:italic>bla<\/jats:italic>\n                      <jats:sub>CMY-2, \u2212\u200959<\/jats:sub>\n                      genes for AmpC beta-lactamase and isolates of both clusters were generally well-equipped with virulence-associated genes, with considerable differences in distribution of certain virulence-associated genes between phylogenetically distant lineages. Other important and potentially zoonotic APEC STs were detected, incl. ST117, ST354 and ST95, showing several molecular features typical for human ExPEC.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Conclusions<\/jats:title>\n                    <jats:p>The results support the concept of local spread of virulent APEC clones, as well as of zoonotic potential of specific poultry-associated lineages, and highlight the need to investigate the possible source of these pathogenic strains.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1186\/s12917-020-02407-2","type":"journal-article","created":{"date-parts":[[2020,6,15]],"date-time":"2020-06-15T11:01:31Z","timestamp":1592218891000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":43,"title":["Genomic analysis of Escherichia coli strains isolated from diseased chicken in the Czech Republic"],"prefix":"10.1186","volume":"16","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-8377-3815","authenticated-orcid":false,"given":"Aneta","family":"Papouskova","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Martina","family":"Masarikova","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adam","family":"Valcek","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David","family":"Senk","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Darina","family":"Cejkova","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eva","family":"Jahodarova","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alois","family":"Cizek","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2020,6,10]]},"reference":[{"key":"2407_CR1","doi-asserted-by":"publisher","first-page":"751","DOI":"10.1002\/9781119421481.ch18","volume-title":"Diseases of poultry","author":"LK Nolan","year":"2013","unstructured":"Nolan LK, Barnes HJ, Vaillancourt JP, Abdul-Aziz T, Logue CM. 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