{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,11,7]],"date-time":"2026-11-07T05:32:53Z","timestamp":1794029573338,"version":"4.8.0"},"reference-count":46,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2018,10,10]],"date-time":"2018-10-10T00:00:00Z","timestamp":1539129600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Ann Clin Microbiol Antimicrob"],"published-print":{"date-parts":[[2018,12]]},"DOI":"10.1186\/s12941-018-0289-2","type":"journal-article","created":{"date-parts":[[2018,10,9]],"date-time":"2018-10-09T23:57:59Z","timestamp":1539129479000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":82,"title":["An update on gastrointestinal endoscopy-associated infections and their contributing factors"],"prefix":"10.1186","volume":"17","author":[{"given":"Charles Eugenio","family":"McCafferty","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marra Jai","family":"Aghajani","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David","family":"Abi-Hanna","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Iain Bruce","family":"Gosbell","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Slade Owen","family":"Jensen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2018,10,10]]},"reference":[{"issue":"25","key":"289_CR1","doi-asserted-by":"publisher","first-page":"3953","DOI":"10.3748\/wjg.v12.i25.3953","volume":"12","author":"DB Nelson","year":"2006","unstructured":"Nelson DB, Muscarella LF. Current issues in endoscope reprocessing and infection control during gastrointestinal endoscopy. World J Gastroenterol. 2006;12(25):3953\u201364.","journal-title":"World J Gastroenterol"},{"issue":"10","key":"289_CR2","doi-asserted-by":"publisher","first-page":"913","DOI":"10.1016\/j.ajic.2012.02.005","volume":"40","author":"MM Ribeiro","year":"2012","unstructured":"Ribeiro MM, de Oliveira AC. Analysis of the air\/water channels of gastrointestinal endoscopies as a risk factor for the transmission of microorganisms among patients. Am J Infect Control. 2012;40(10):913\u20136.","journal-title":"Am J Infect Control"},{"issue":"5","key":"289_CR3","doi-asserted-by":"publisher","first-page":"274","DOI":"10.1016\/j.ajic.2005.08.007","volume":"34","author":"L Bisset","year":"2006","unstructured":"Bisset L, Cossart YE, Selby W, West R, Catterson D, O\u2019Hara K, et al. A prospective study of the efficacy of routine decontamination for gastrointestinal endoscopes and the risk factors for failure. Am J Infect Control. 2006;34(5):274\u201380.","journal-title":"Am J Infect Control"},{"issue":"6","key":"289_CR4","doi-asserted-by":"publisher","first-page":"1075","DOI":"10.1016\/j.gie.2011.03.1183","volume":"73","author":"BT Petersen","year":"2011","unstructured":"Committee AQAIE, Petersen BT, Chennat J, Cohen J, Cotton PB, Greenwald DA, et al. Multisociety guideline on reprocessing flexible gastrointestinal endoscopes: 2011. Gastrointestinal endoscopy. 2011;73(6):1075\u201384.","journal-title":"Gastrointestinal endoscopy."},{"key":"289_CR5","unstructured":"Gastroenterological Society of Australia (GESA). Infection control in endoscopy consenus statements. In: Australian gastroenterology week (AGW) 2017, Queensland, Australia; 2017."},{"issue":"5","key":"289_CR6","doi-asserted-by":"publisher","first-page":"356","DOI":"10.5946\/ce.2015.48.5.356","volume":"48","author":"HH Choi","year":"2015","unstructured":"Choi HH, Cho YS. Endoscope reprocessing: update on controversial issues. Clin Endosc. 2015;48(5):356\u201360.","journal-title":"Clin Endosc."},{"issue":"14","key":"289_CR7","doi-asserted-by":"publisher","first-page":"1447","DOI":"10.1001\/jama.2014.12720","volume":"312","author":"L Epstein","year":"2014","unstructured":"Epstein L, Hunter JC, Arwady MA, Tsai V, Stein L, Gribogiannis M, et al. New Delhi metallo-beta-lactamase-producing carbapenem-resistant Escherichia coli associated with exposure to duodenoscopes. JAMA. 2014;312(14):1447\u201355.","journal-title":"JAMA"},{"issue":"2","key":"289_CR8","doi-asserted-by":"publisher","first-page":"259","DOI":"10.1016\/j.gie.2016.01.055","volume":"84","author":"I Naryzhny","year":"2016","unstructured":"Naryzhny I, Silas D, Chi K. Impact of ethylene oxide gas sterilization of duodenoscopes after a carbapenem-resistant Enterobacteriaceae outbreak. Gastrointest Endosc. 2016;84(2):259\u201362.","journal-title":"Gastrointest Endosc"},{"issue":"4","key":"289_CR9","doi-asserted-by":"publisher","first-page":"1041","DOI":"10.1016\/j.gie.2014.11.006","volume":"81","author":"ZL Smith","year":"2015","unstructured":"Smith ZL, Oh YS, Saeian K, Edmiston CE Jr, Khan AH, Massey BT, et al. Transmission of carbapenem-resistant Enterobacteriaceae during ERCP: time to revisit the current reprocessing guidelines. Gastrointest Endosc. 2015;81(4):1041\u20135.","journal-title":"Gastrointest Endosc"},{"issue":"5 Suppl","key":"289_CR10","doi-asserted-by":"publisher","first-page":"S2","DOI":"10.1016\/j.ajic.2012.11.005","volume":"41","author":"WA Rutala","year":"2013","unstructured":"Rutala WA, Weber DJ. Disinfection and sterilization: an overview. Am J Infect Control. 2013;41(5 Suppl):S2\u20135.","journal-title":"Am J Infect Control"},{"issue":"12","key":"289_CR11","doi-asserted-by":"publisher","first-page":"1188","DOI":"10.1016\/j.ajic.2013.04.022","volume":"41","author":"AM Dirlam Langlay","year":"2013","unstructured":"Dirlam Langlay AM, Ofstead CL, Mueller NJ, Tosh PK, Baron TH, Wetzler HP. Reported gastrointestinal endoscope reprocessing lapses: the tip of the iceberg. Am J Infect Control. 2013;41(12):1188\u201394.","journal-title":"Am J Infect Control"},{"issue":"4","key":"289_CR12","doi-asserted-by":"publisher","first-page":"329","DOI":"10.1016\/j.jhin.2017.07.030","volume":"97","author":"RC Herve","year":"2017","unstructured":"Herve RC. Endoscopy in the twenty-first century: minimally invasive state-of-the-art medical technology or a future main vector of hospital-acquired infections? J Hosp Infect. 2017;97(4):329\u201330.","journal-title":"J Hosp Infect"},{"key":"289_CR13","doi-asserted-by":"publisher","first-page":"885","DOI":"10.1016\/S0016-5107(93)70316-8","volume":"36","author":"MBBD Kimmery","year":"1993","unstructured":"Kimmery MBBD, Carr-Locke DL, DiMarino AJ, Jensen DM, Katon R, et al. ASGE technology assessment position paper: transmission of infection by gastrointestinal endoscopy. Gastrointest Endosc. 1993;36:885\u20138.","journal-title":"Gastrointest Endosc"},{"issue":"8","key":"289_CR14","doi-asserted-by":"publisher","first-page":"734","DOI":"10.1016\/j.ajic.2012.10.008","volume":"41","author":"CL Ofstead","year":"2013","unstructured":"Ofstead CL, Dirlam Langlay AM, Mueller NJ, Tosh PK, Wetzler HP. Re-evaluating endoscopy-associated infection risk estimates and their implications. Am J Infect Control. 2013;41(8):734\u20136.","journal-title":"Am J Infect Control"},{"issue":"9","key":"289_CR15","doi-asserted-by":"publisher","first-page":"1032","DOI":"10.1016\/j.ajic.2016.03.029","volume":"44","author":"JC O\u2019Horo","year":"2016","unstructured":"O\u2019Horo JC, Farrell A, Sohail MR, Safdar N. Carbapenem-resistant Enterobacteriaceae and endoscopy: an evolving threat. Am J Infect Control. 2016;44(9):1032\u20136.","journal-title":"Am J Infect Control"},{"issue":"4","key":"289_CR16","doi-asserted-by":"publisher","first-page":"407","DOI":"10.1097\/QCO.0000000000000290","volume":"29","author":"ZA Rubin","year":"2016","unstructured":"Rubin ZA, Murthy RK. Outbreaks associated with duodenoscopes: new challenges and controversies. Curr Opin Infect Dis. 2016;29(4):407\u201314.","journal-title":"Curr Opin Infect Dis"},{"key":"289_CR17","unstructured":"Gastroenterological Society of Australia (GESA), Gastroenterological Nurses College of Australia (GENCA). Infection control in endoscopy, 3rd ed. Mulgrave; 2010."},{"issue":"48","key":"289_CR18","first-page":"19734","volume":"15","author":"A Carbonne","year":"2010","unstructured":"Carbonne A, Thiolet JM, Fournier S, Fortineau N, Kassis-Chikhani N, Boytchev I, et al. Control of a multi-hospital outbreak of KPC-producing Klebsiella pneumoniae type 2 in France, September to October 2009. Euro surveill Bull Europeen sur les maladies transmissibles\u2009=\u2009European communicable disease bulletin. 2010;15(48):19734.","journal-title":"Euro surveill Bull Europeen sur les maladies transmissibles\u2009=\u2009European communicable disease bulletin"},{"issue":"6","key":"289_CR19","doi-asserted-by":"publisher","first-page":"562","DOI":"10.1016\/j.ajic.2012.07.008","volume":"41","author":"SF Alrabaa","year":"2013","unstructured":"Alrabaa SF, Nguyen P, Sanderson R, Baluch A, Sandin RL, Kelker D, et al. Early identification and control of carbapenemase-producing Klebsiella pneumoniae, originating from contaminated endoscopic equipment. Am J Infect Control. 2013;41(6):562\u20134.","journal-title":"Am J Infect Control"},{"issue":"6","key":"289_CR20","doi-asserted-by":"publisher","first-page":"1305","DOI":"10.1093\/jac\/dkq117","volume":"65","author":"T Naas","year":"2010","unstructured":"Naas T, Cuzon G, Babics A, Fortineau N, Boytchev I, Gayral F, et al. Endoscopy-associated transmission of carbapenem-resistant Klebsiella pneumoniae producing KPC-2 beta-lactamase. J Antimicrob Chemother. 2010;65(6):1305\u20136.","journal-title":"J Antimicrob Chemother"},{"issue":"4","key":"289_CR21","doi-asserted-by":"publisher","first-page":"341","DOI":"10.1016\/j.jhin.2012.10.016","volume":"83","author":"O Bajolet","year":"2013","unstructured":"Bajolet O, Ciocan D, Vallet C, de Champs C, Vernet-Garnier V, Guillard T, et al. Gastroscopy-associated transmission of extended-spectrum beta-lactamase-producing Pseudomonas aeruginosa. J Hosp Infect. 2013;83(4):341\u20133.","journal-title":"J Hosp Infect"},{"issue":"11","key":"289_CR22","doi-asserted-by":"publisher","first-page":"895","DOI":"10.1055\/s-0030-1255647","volume":"42","author":"C Aumeran","year":"2010","unstructured":"Aumeran C, Poincloux L, Souweine B, Robin F, Laurichesse H, Baud O, et al. Multidrug-resistant Klebsiella pneumoniae outbreak after endoscopic retrograde cholangiopancreatography. Endoscopy. 2010;42(11):895\u20139.","journal-title":"Endoscopy"},{"issue":"4","key":"289_CR23","doi-asserted-by":"publisher","first-page":"440","DOI":"10.1016\/j.ajic.2016.11.024","volume":"45","author":"P Robertson","year":"2017","unstructured":"Robertson P, Smith A, Anderson M, Stewart J, Hamilton K, McNamee S, et al. Transmission of Salmonella enteritidis after endoscopic retrograde cholangiopancreatography because of inadequate endoscope decontamination. Am J Infect Control. 2017;45(4):440\u20132.","journal-title":"Am J Infect Control"},{"issue":"5","key":"289_CR24","doi-asserted-by":"publisher","first-page":"e141","DOI":"10.1016\/j.ajic.2010.04.191","volume":"38","author":"R Sanderson","year":"2010","unstructured":"Sanderson R, Braithwaite L, Ball L, Ragan P, Eisenstein L. An outbreak of carbapenem-resistant Klebsiella pneumoniae infections associated with endoscopic retrograde cholangiopancreatography (ERCP) procedures at a hospital. Am J Infect Control. 2010;38(5):e141.","journal-title":"Am J Infect Control."},{"issue":"5","key":"289_CR25","first-page":"E198","volume":"36","author":"S Reiner","year":"2008","unstructured":"Reiner S. Investigation of a cluster of genomically identical Pseudomonas aeruginosa blood isolates following endoscopic retrograde cholangiopancreatography in a gastroenterology laboratory. Am J Infect Control. 2008;36(5):E198.","journal-title":"Am J Infect Control"},{"issue":"3","key":"289_CR26","first-page":"156","volume":"32","author":"E Reddick","year":"2017","unstructured":"Reddick E. Investigation of salmonellosis outbreak following a hospital endoscopy: a public health case study. Can J Infect Control. 2017;32(3):156\u20139.","journal-title":"Can J Infect Control"},{"issue":"6","key":"289_CR27","doi-asserted-by":"publisher","first-page":"1121","DOI":"10.1016\/j.gie.2016.03.790","volume":"83","author":"S Kim","year":"2016","unstructured":"Kim S, Russell D, Mohamadnejad M, Makker J, Sedarat A, Watson RR, et al. Risk factors associated with the transmission of carbapenem-resistant Enterobacteriaceae via contaminated duodenoscopes. Gastrointest Endosc. 2016;83(6):1121\u20139.","journal-title":"Gastrointest Endosc"},{"key":"289_CR28","doi-asserted-by":"publisher","first-page":"8","DOI":"10.1186\/s13756-015-0049-4","volume":"4","author":"A Kola","year":"2015","unstructured":"Kola A, Piening B, Pape UF, Veltzke-Schlieker W, Kaase M, Geffers C, et al. An outbreak of carbapenem-resistant OXA-48\u2014producing Klebsiella pneumonia associated to duodenoscopy. Antimicrob Resist Infect Control. 2015;4:8.","journal-title":"Antimicrob Resist Infect Control."},{"issue":"8","key":"289_CR29","doi-asserted-by":"publisher","first-page":"e43","DOI":"10.1016\/j.ajic.2015.04.204","volume":"43","author":"L Qiu","year":"2015","unstructured":"Qiu L, Zhou Z, Liu Q, Ni Y, Zhao F, Cheng H. Investigating the failure of repeated standard cleaning and disinfection of a Pseudomonas aeruginosa-infected pancreatic and biliary endoscope. Am J Infect Control. 2015;43(8):e43\u20136.","journal-title":"Am J Infect Control"},{"issue":"7","key":"289_CR30","doi-asserted-by":"publisher","first-page":"1159","DOI":"10.1093\/cid\/cix527","volume":"65","author":"RM Humphries","year":"2017","unstructured":"Humphries RM, Yang S, Kim S, Muthusamy VR, Russell D, Trout AM, et al. Duodenoscope-related outbreak of a carbapenem-resistant Klebsiella pneumoniae identified using advanced molecular diagnostics. Clin Infect Dis. 2017;65(7):1159\u201366.","journal-title":"Clin Infect Dis"},{"issue":"10","key":"289_CR31","doi-asserted-by":"publisher","first-page":"913","DOI":"10.1055\/s-0029-1215086","volume":"41","author":"J Kovaleva","year":"2009","unstructured":"Kovaleva J, Meessen NE, Peters FT, Been MH, Arends JP, Borgers RP, et al. Is bacteriologic surveillance in endoscope reprocessing stringent enough? Endoscopy. 2009;41(10):913\u20136.","journal-title":"Endoscopy."},{"issue":"6","key":"289_CR32","doi-asserted-by":"publisher","first-page":"493","DOI":"10.1055\/s-0034-1391886","volume":"47","author":"CJ Verfaillie","year":"2015","unstructured":"Verfaillie CJ, Bruno MJ, Voor in \u2018t Holt AF, Buijs JG, Poley JW, Loeve AJ, et al. Withdrawal of a novel-design duodenoscope ends outbreak of a VIM-2-producing Pseudomonas aeruginosa. Endoscopy. 2015;47(6):493\u2013502.","journal-title":"Endoscopy."},{"issue":"6","key":"289_CR33","doi-asserted-by":"publisher","first-page":"634","DOI":"10.1017\/ice.2015.66","volume":"36","author":"KA Wendorf","year":"2015","unstructured":"Wendorf KA, Kay M, Baliga C, Weissman SJ, Gluck M, Verma P, et al. Endoscopic retrograde cholangiopancreatography-associated AmpC Escherichia coli outbreak. Infect Control Hosp Epidemiol. 2015;36(6):634\u201342.","journal-title":"Infect Control Hosp Epidemiol"},{"issue":"10","key":"289_CR34","doi-asserted-by":"publisher","first-page":"3118","DOI":"10.1128\/JCM.01394-15","volume":"53","author":"RM Humphries","year":"2015","unstructured":"Humphries RM, McDonnell G. Superbugs on duodenoscopes: the challenge of cleaning and disinfection of reusable devices. J Clin Microbiol. 2015;53(10):3118\u201325.","journal-title":"J Clin Microbiol"},{"key":"289_CR35","unstructured":"Medical P. Video Duodenoscopes ED34-i10T. Japan: PENTAX Medical; 2018. \n                    https:\/\/www.pentaxmedical.com\/pentax\/en\/100\/1\/Video-Duodenoscopes-ED34-i10T\n                    \n                  . Accessed Mar 2018."},{"issue":"6","key":"289_CR36","doi-asserted-by":"publisher","first-page":"781","DOI":"10.1016\/j.gie.2008.01.027","volume":"67","author":"S Banerjee","year":"2008","unstructured":"Asge Standards Of Practice C, Banerjee S, Shen B, Nelson DB, Lichtenstein DR, Baron TH, et al. Infection control during GI endoscopy. Gastrointest Endosc. 2008;67(6):781\u201390.","journal-title":"Gastrointest Endosc"},{"issue":"11","key":"289_CR37","doi-asserted-by":"publisher","first-page":"1203","DOI":"10.1016\/j.ajic.2014.07.029","volume":"42","author":"W Ren-Pei","year":"2014","unstructured":"Ren-Pei W, Hui-Jun X, Ke Q, Dong W, Xing N, Zhao-Shen L. Correlation between the growth of bacterial biofilm in flexible endoscopes and endoscope reprocessing methods. Am J Infect Control. 2014;42(11):1203\u20136.","journal-title":"Am J Infect Control"},{"issue":"5","key":"289_CR38","doi-asserted-by":"publisher","first-page":"689","DOI":"10.1016\/j.bpg.2016.09.008","volume":"30","author":"J Kovaleva","year":"2016","unstructured":"Kovaleva J. Infectious complications in gastrointestinal endoscopy and their prevention. Best Pract Res Clin Gastroenterol. 2016;30(5):689\u2013704.","journal-title":"Best Pract Res Clin Gastroenterol"},{"issue":"5 Suppl","key":"289_CR39","doi-asserted-by":"publisher","first-page":"e41","DOI":"10.1016\/j.ajic.2016.01.020","volume":"44","author":"MJ Alfa","year":"2016","unstructured":"Alfa MJ. Current issues result in a paradigm shift in reprocessing medical and surgical instruments. Am J Infect Control. 2016;44(5 Suppl):e41\u20135.","journal-title":"Am J Infect Control"},{"issue":"1","key":"289_CR40","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1016\/j.jhin.2007.10.012","volume":"68","author":"L Pineau","year":"2008","unstructured":"Pineau L, Villard E, Duc DL, Marchetti B. Endoscope drying\/storage cabinet: interest and efficacy. J Hosp Infect. 2008;68(1):59\u201365.","journal-title":"J Hosp Infect"},{"issue":"1","key":"289_CR41","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1016\/j.jhin.2013.01.013","volume":"84","author":"P Grandval","year":"2013","unstructured":"Grandval P, Hautefeuille G, Marchetti B, Pineau L, Laugier R. Evaluation of a storage cabinet for heat-sensitive endoscopes in a clinical setting. J Hosp Infect. 2013;84(1):71\u20136.","journal-title":"J Hosp Infect"},{"issue":"12","key":"289_CR42","doi-asserted-by":"publisher","first-page":"1675","DOI":"10.1016\/j.ajic.2016.06.029","volume":"44","author":"CL Ofstead","year":"2016","unstructured":"Ofstead CL, Wetzler HP, Eiland JE, Heymann OL, Held SB, Shaw MJ. Assessing residual contamination and damage inside flexible endoscopes over time. Am J Infect Control. 2016;44(12):1675\u20137.","journal-title":"Am J Infect Control"},{"issue":"3","key":"289_CR43","doi-asserted-by":"publisher","first-page":"477","DOI":"10.1016\/j.gie.2015.04.036","volume":"82","author":"AS Ross","year":"2015","unstructured":"Ross AS, Baliga C, Verma P, Duchin J, Gluck M. A quarantine process for the resolution of duodenoscope-associated transmission of multidrug-resistant Escherichia coli. Gastrointest Endosc. 2015;82(3):477\u201383.","journal-title":"Gastrointest Endosc"},{"issue":"2","key":"289_CR44","doi-asserted-by":"publisher","first-page":"185","DOI":"10.1007\/s11938-016-0088-9","volume":"14","author":"JT Higa","year":"2016","unstructured":"Higa JT, Gluck M, Ross AS. Duodenoscope-associated bacterial infections: a review and update. Curr Treat Options Gastroenterol. 2016;14(2):185\u201393.","journal-title":"Curr Treat Options Gastroenterol"},{"issue":"1","key":"289_CR45","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1007\/s15010-013-0544-6","volume":"42","author":"P Gastmeier","year":"2014","unstructured":"Gastmeier P, Vonberg RP. Klebsiella spp. in endoscopy-associated infections: we may only be seeing the tip of the iceberg. Infection. 2014;42(1):15\u201321.","journal-title":"Infection."},{"key":"289_CR46","doi-asserted-by":"publisher","DOI":"10.1016\/j.jhin.2018.08.004","author":"CE McCafferty","year":"2018","unstructured":"McCafferty CE, Abi-Hanna D, Aghajani MJ, Micali GT, Lockart I, Vickery K, et al. The validity of adenosine triphosphate (ATP) measurement in detecting endoscope contamination. J Hosp Infect. 2018. \n                    https:\/\/doi.org\/10.1016\/j.jhin.2018.08.004\n                    \n                  .","journal-title":"J Hosp Infect"}],"container-title":["Annals of Clinical Microbiology and Antimicrobials"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12941-018-0289-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s12941-018-0289-2\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s12941-018-0289-2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,10,9]],"date-time":"2019-10-09T19:08:52Z","timestamp":1570648132000},"score":1,"resource":{"primary":{"URL":"https:\/\/ann-clinmicrob.biomedcentral.com\/articles\/10.1186\/s12941-018-0289-2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,10,10]]},"references-count":46,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2018,12]]}},"alternative-id":["289"],"URL":"https:\/\/doi.org\/10.1186\/s12941-018-0289-2","relation":{},"ISSN":["1476-0711"],"issn-type":[{"value":"1476-0711","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,10,10]]},"assertion":[{"value":"30 August 2018","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"6 October 2018","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"10 October 2018","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"36"}}