{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,17]],"date-time":"2026-06-17T04:53:14Z","timestamp":1781671994893,"version":"3.54.5"},"reference-count":116,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2026,4,29]],"date-time":"2026-04-29T00:00:00Z","timestamp":1777420800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2026,6,17]],"date-time":"2026-06-17T00:00:00Z","timestamp":1781654400000},"content-version":"vor","delay-in-days":49,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"funder":[{"DOI":"10.13039\/501100001809","name":"the National Natural Science Foundation of China","doi-asserted-by":"crossref","award":["32470521"],"award-info":[{"award-number":["32470521"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001809","name":"the National Natural Science Foundation of China","doi-asserted-by":"crossref","award":["32370542"],"award-info":[{"award-number":["32370542"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Front Zool"],"DOI":"10.1186\/s12983-026-00611-8","type":"journal-article","created":{"date-parts":[[2026,4,29]],"date-time":"2026-04-29T09:33:05Z","timestamp":1777455185000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Dynamic changes in chromatin accessibility reveal the role of NF-Y targeting AURKB in mediating cell cycle during asynchronous oogenesis in the Chinese Alligator (Alligator sinensis)"],"prefix":"10.1186","volume":"23","author":[{"given":"Pengfei","family":"Li","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuting","family":"Ni","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yue","family":"Wen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaojing","family":"Cao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jin","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yongkang","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pingsi","family":"Yi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaobing","family":"Wu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Haitao","family":"Nie","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,4,29]]},"reference":[{"issue":"1","key":"611_CR1","doi-asserted-by":"publisher","first-page":"7403","DOI":"10.1038\/s41467-023-43261-8","volume":"14","author":"WX Liu","year":"2023","unstructured":"Liu WX, Liu HN, Weng ZP, et al. Maternal vitamin B1 is a determinant for the fate of primordial follicle formation in offspring. Nat Commun. 2023;14(1):7403.","journal-title":"Nat Commun"},{"issue":"2","key":"611_CR2","doi-asserted-by":"publisher","first-page":"182","DOI":"10.1016\/S1472-6483(10)60939-X","volume":"10","author":"MD Felici","year":"2005","unstructured":"Felici MD, Klinger FG, Farini D, et al. Establishment of oocyte population in the fetal ovary: primordial germ cell proliferation and oocyte programmed cell death. Reprod Biomed Online. 2005;10(2):182\u201391.","journal-title":"Reprod Biomed Online"},{"issue":"7","key":"611_CR3","doi-asserted-by":"publisher","first-page":"518","DOI":"10.1097\/00006254-200407000-00017","volume":"59","author":"J Johnson","year":"2004","unstructured":"Johnson J, Canning J, Kanedo T, et al. Germline stem cells and follicular renewal in the postnatal mammalian ovary. Obstet Gynecol Surv. 2004;59(7):518\u201320.","journal-title":"Obstet Gynecol Surv"},{"issue":"3","key":"611_CR4","doi-asserted-by":"publisher","first-page":"333","DOI":"10.1007\/s00418-021-02058-w","volume":"157","author":"R Tanimoto","year":"2022","unstructured":"Tanimoto R, Yoshida K, Ikeda S, et al. Insights into in vivo follicle formation: a review of in vitro systems. Histochem Cell Biol. 2022;157(3):333\u201345.","journal-title":"Histochem Cell Biol"},{"issue":"1","key":"611_CR5","doi-asserted-by":"publisher","first-page":"13","DOI":"10.1016\/S0940-9602(04)80113-4","volume":"186","author":"M Lc","year":"2004","unstructured":"Lc M, Rdp G, Ram\u00edrez P MP. Morphology of the ovary of Caiman crocodilus (Crocodylia: Alligatoridae). Ann Anat. 2004;186(1):13\u201324.","journal-title":"Ann Anat"},{"key":"611_CR6","doi-asserted-by":"publisher","first-page":"17","DOI":"10.1007\/978-1-59745-000-3_2","volume":"322","author":"MA Rasar","year":"2006","unstructured":"Rasar MA, Hammes SR. The physiology of the Xenopus laevis ovary. Methods Mol Biol. 2006;322:17.","journal-title":"Methods Mol Biol"},{"issue":"5985","key":"611_CR7","doi-asserted-by":"publisher","first-page":"1561","DOI":"10.1126\/science.1185473","volume":"328","author":"S Nakamura","year":"2010","unstructured":"Nakamura S, Kobayashi R, Nishimura R, et al. Identification of germline stem cells in the ovary of the teleost Medaka. Science. 2010;328(5985):1561\u20133.","journal-title":"Science"},{"key":"611_CR8","doi-asserted-by":"publisher","DOI":"10.1002\/jez.b.22744","author":"L Milani","year":"2017","unstructured":"Milani L, Pecci A, Cifaldi C, et al. PL10 DEAD-box protein is expressed during germ cell differentiation in the reptile Podarcis sicula (Family Lacertidae). J Exp Zool B Mol Dev Evol. 2017. https:\/\/doi.org\/10.1002\/jez.b.22744.","journal-title":"J Exp Zool B Mol Dev Evol"},{"key":"611_CR9","doi-asserted-by":"publisher","DOI":"10.1093\/cz\/zoaf058","author":"C Li","year":"2025","unstructured":"Li C, Zhang Y, Wen Y, et al. MicroRNA expression profiling and functional analysis of CDH3 during oogenesis in the chinese alligator (Alligator sinensis). Curr Zool. 2025. https:\/\/doi.org\/10.1093\/cz\/zoaf058.","journal-title":"Curr Zool"},{"issue":"1","key":"611_CR10","doi-asserted-by":"publisher","first-page":"8","DOI":"10.1186\/s40850-023-00170-z","volume":"8","author":"H Nie","year":"2023","unstructured":"Nie H, Xu Y, Zhang Y, et al. The effects of endogenous FSH and its receptor on oogenesis and folliculogenesis in female Alligator sinensis. BMC Zool. 2023;8(1):8.","journal-title":"BMC Zool"},{"key":"611_CR11","doi-asserted-by":"publisher","DOI":"10.1038\/s41576-018-0089-8","author":"SL Klemm","year":"2019","unstructured":"Klemm SL, Shipony Z, Greenleaf WJ. Chromatin accessibility and the regulatory epigenome. Nat Rev Genet. 2019. https:\/\/doi.org\/10.1038\/s41576-018-0089-8.","journal-title":"Nat Rev Genet"},{"issue":"2","key":"611_CR12","doi-asserted-by":"publisher","first-page":"304","DOI":"10.1016\/j.celrep.2018.06.030","volume":"24","author":"K Miyamoto","year":"2018","unstructured":"Miyamoto K, Nguyen KT, Allen GE, et al. Chromatin accessibility impacts transcriptional reprogramming in oocytes. Cell Rep. 2018;24(2):304\u201311.","journal-title":"Cell Rep"},{"issue":"12","key":"611_CR13","doi-asserted-by":"publisher","first-page":"1238","DOI":"10.1002\/mrd.22922","volume":"84","author":"B Cabot","year":"2017","unstructured":"Cabot B, Tseng YC, Crodian JS, et al. Differential expression of key subunits of SWI\/SNF chromatin remodeling complexes in porcine embryos derived in vitro or in vivo. Mol Reprod Dev. 2017;84(12):1238\u201349.","journal-title":"Mol Reprod Dev"},{"issue":"1","key":"611_CR14","doi-asserted-by":"publisher","first-page":"8955","DOI":"10.1038\/s41467-025-64009-6","volume":"16","author":"H Zhang","year":"2025","unstructured":"Zhang H, Li Z, Zhu Y, et al. Fosl2 facilitates chromatin accessibility to determine developmental events during follicular maturation. Nat Commun. 2025;16(1):8955.","journal-title":"Nat Commun"},{"key":"611_CR15","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M112.410613","author":"SM Shaikh Rahman","year":"2012","unstructured":"Shaikh Rahman SM, et al. CCAAT\/enhancer-binding protein \u03b2 (C\/EBP\u03b2) expression regulates dietary-induced inflammation in macrophages and adipose tissue in mice. J Biol Chem. 2012. https:\/\/doi.org\/10.1074\/jbc.M112.410613.","journal-title":"J Biol Chem"},{"issue":"13","key":"611_CR16","doi-asserted-by":"publisher","first-page":"657","DOI":"10.1093\/nar\/gkaf657","volume":"53","author":"BW Zhao","year":"2025","unstructured":"Zhao BW, Zhang YN, Meng TG, et al. Re-establishment of H3K9me2 eliminates the transcriptional inhibition of ST18 on meiotic genes and orchestrates female germ cell development Open Access. Nucleic Acids Res. 2025;53(13):657.","journal-title":"Nucleic Acids Res"},{"issue":"2","key":"611_CR17","doi-asserted-by":"publisher","first-page":"129","DOI":"10.1038\/nrg2295","volume":"9","author":"H Sasaki","year":"2008","unstructured":"Sasaki H, Matsui Y. Epigenetic events in mammalian germ-cell development: reprogramming and beyond. Nat Rev Genet. 2008;9(2):129.","journal-title":"Nat Rev Genet"},{"issue":"1","key":"611_CR18","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1016\/j.cell.2013.09.011","volume":"155","author":"CM Rivera","year":"2013","unstructured":"Rivera CM, Ren B. Mapping human epigenomes. Cell. 2013;155(1):39\u201355.","journal-title":"Cell"},{"issue":"10","key":"611_CR19","doi-asserted-by":"publisher","first-page":"1894","DOI":"10.1038\/s41594-025-01580-y","volume":"32","author":"Q Xu","year":"2025","unstructured":"Xu Q, Huang C, Ming J, et al. H2A.Z is essential for oocyte maturation and fertility in female mouse. Nat Struct Mol Biol. 2025;32(10):1894\u2013906.","journal-title":"Nat Struct Mol Biol"},{"issue":"32","key":"611_CR20","doi-asserted-by":"publisher","first-page":"e2220849120","DOI":"10.1073\/pnas.2220849120","volume":"120","author":"C Hughes","year":"2023","unstructured":"Hughes C, Smith O, Meihnsohn MC, et al. Steroidogenic factor 1 (SF-1; Nr5a1) regulates the formation of the ovarian reserve. Proc Natl Acad Sci U S A. 2023;120(32):e2220849120.","journal-title":"Proc Natl Acad Sci U S A"},{"key":"611_CR21","doi-asserted-by":"publisher","DOI":"10.1126\/science.adg7325","author":"N Festuccia","year":"2024","unstructured":"Festuccia N, Vandormael-Pournin S, Chervova A, et al. Nr5a2 is dispensable for zygotic genome activation but essential for morula development. Science. 2024. https:\/\/doi.org\/10.1126\/science.adg7325.","journal-title":"Science"},{"issue":"9","key":"611_CR22","doi-asserted-by":"publisher","first-page":"12","DOI":"10.1111\/cpr.13647","volume":"57","author":"Y Lin","year":"2024","unstructured":"Lin Y, Yu L, Xu Q, et al. GATAD2B is required for pre-implantation embryonic development by regulating zygotic genome activation. Cell Prolif. 2024;57(9):12.","journal-title":"Cell Prolif"},{"issue":"6","key":"611_CR23","doi-asserted-by":"publisher","first-page":"720","DOI":"10.3390\/biom14060720","volume":"14","author":"B Fu","year":"2024","unstructured":"Fu B, Ma H, Liu D. Pioneer transcription factors: the first domino in zygotic genome activation. Biomolecules. 2024;14(6):720.","journal-title":"Biomolecules"},{"issue":"3","key":"611_CR24","doi-asserted-by":"publisher","first-page":"802","DOI":"10.1016\/j.bbrc.2003.12.009","volume":"313","author":"S Yan","year":"2004","unstructured":"Yan S, Tso J. Temperature may influence and regulate NF-YB expression in toad oocyte. Biochem Biophys Res Commun. 2004;313(3):802\u201311.","journal-title":"Biochem Biophys Res Commun"},{"issue":"6","key":"611_CR25","doi-asserted-by":"publisher","first-page":"1516","DOI":"10.1105\/tpc.16.00864","volume":"29","author":"N Gnesutta","year":"2017","unstructured":"Gnesutta N, Kumimoto RW, Swain S, et al. CONSTANS imparts DNA sequence specificity to the histone fold NF-YB\/NF-YC dimer. Plant Cell. 2017;29(6):1516\u201332.","journal-title":"Plant Cell"},{"key":"611_CR26","first-page":"47","volume":"1","author":"D Dolfini","year":"2012","unstructured":"Dolfini D, Gatta R, Mantovani R. NF-Y and the transcriptional activation of CCAAT promoters. Crit Rev Biochem Mol Biol. 2012;1:47.","journal-title":"Crit Rev Biochem Mol Biol"},{"issue":"4","key":"611_CR27","doi-asserted-by":"publisher","first-page":"e2047","DOI":"10.1371\/journal.pone.0002047","volume":"3","author":"G Aymone","year":"2008","unstructured":"Aymone G, Paola F, Fiorenza M, et al. NF-Y dependent epigenetic modifications discriminate between proliferating and postmitotic tissue. PLoS One. 2008;3(4):e2047.","journal-title":"PLoS One"},{"issue":"8","key":"611_CR28","doi-asserted-by":"publisher","first-page":"5570","DOI":"10.1074\/jbc.M006052200","volume":"276","author":"I Manni","year":"2001","unstructured":"Manni I, Mazzaro G, Gurtner A, et al. NF-Y Mediates the Transcriptional Inhibition of thecyclin B1, cyclin B2, and cdc25CPromoters upon Induced G2 Arrest. J Biol Chem. 2001;276(8):5570\u20136.","journal-title":"J Biol Chem"},{"key":"611_CR29","first-page":"1380","volume":"6","author":"G Bungartz","year":"2012","unstructured":"Bungartz G, Land H, Scadden DT, et al. NF-Y is necessary for hematopoietic stem cell proliferation and survival. Am Soc Hematol. 2012;6:1380\u20139.","journal-title":"Am Soc Hematol"},{"issue":"12","key":"611_CR30","doi-asserted-by":"publisher","first-page":"1213","DOI":"10.1038\/nmeth.2688","volume":"10","author":"JD Buenrostro","year":"2013","unstructured":"Buenrostro JD, Giresi PG, Zaba LC, et al. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat Methods. 2013;10(12):1213\u20138.","journal-title":"Nat Methods"},{"issue":"17","key":"611_CR31","doi-asserted-by":"publisher","first-page":"i884","DOI":"10.1093\/bioinformatics\/bty560","volume":"34","author":"S Chen","year":"2018","unstructured":"Chen S, Zhou Y, Chen Y, et al. fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics. 2018;34(17):i884\u201390.","journal-title":"Bioinformatics"},{"issue":"4","key":"611_CR32","doi-asserted-by":"publisher","first-page":"357","DOI":"10.1038\/nmeth.1923","volume":"9","author":"B Langmead","year":"2012","unstructured":"Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012;9(4):357\u20139.","journal-title":"Nat Methods"},{"issue":"9","key":"611_CR33","doi-asserted-by":"publisher","first-page":"R137","DOI":"10.1186\/gb-2008-9-9-r137","volume":"9","author":"Y Zhang","year":"2008","unstructured":"Zhang Y, Liu T, Meyer CA, et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.","journal-title":"Genome Biol"},{"issue":"3","key":"611_CR34","doi-asserted-by":"publisher","first-page":"lqae118","DOI":"10.1093\/nargab\/lqae118","volume":"6","author":"D Bressan","year":"2024","unstructured":"Bressan D, Fern\u00e1ndez-P\u00e9rez D, Romanel A, et al. SpikeFlow: automated and flexible analysis of ChIP-Seq data with spike-in control. NAR Genom Bioinform. 2024;6(3):lqae118.","journal-title":"NAR Genom Bioinform"},{"issue":"14","key":"611_CR35","doi-asserted-by":"publisher","first-page":"2382","DOI":"10.1093\/bioinformatics\/btv145","volume":"31","author":"G Yu","year":"2015","unstructured":"Yu G, Wang LG, He QY. ChIPseeker: an R\/Bioconductor package for ChIP peak annotation, comparison and visualization. Bioinformatics. 2015;31(14):2382\u20133.","journal-title":"Bioinformatics"},{"key":"611_CR36","doi-asserted-by":"publisher","first-page":"1049","DOI":"10.1093\/nar\/gku1179","volume":"43","author":"JA Blake","year":"2015","unstructured":"Blake JA, Chan J, Kishore R, et al. Gene ontology consortium: going forward. Nucleic Acids Res. 2015;43:1049\u201356.","journal-title":"Nucleic Acids Res"},{"key":"611_CR37","doi-asserted-by":"publisher","first-page":"D480","DOI":"10.1093\/nar\/gkm882","volume":"36","author":"M Kanehisa","year":"2008","unstructured":"Kanehisa M, Araki M, Goto S, et al. KEGG for linking genomes to life and the environment. Nucleic Acids Res. 2008;36:D480-484.","journal-title":"Nucleic Acids Res"},{"issue":"W1","key":"611_CR38","doi-asserted-by":"publisher","first-page":"W39","DOI":"10.1093\/nar\/gkv416","volume":"43","author":"TL Bailey","year":"2015","unstructured":"Bailey TL, Johnson J, Grant CE, et al. The MEME suite. Nucleic Acids Res. 2015;43(W1):W39-49.","journal-title":"Nucleic Acids Res"},{"issue":"12","key":"611_CR39","doi-asserted-by":"publisher","first-page":"1696","DOI":"10.1093\/bioinformatics\/btr189","volume":"27","author":"P Machanick","year":"2011","unstructured":"Machanick P, Bailey TL. MEME-ChIP: motif analysis of large DNA datasets. Bioinformatics. 2011;27(12):1696\u20137.","journal-title":"Bioinformatics"},{"issue":"D1","key":"611_CR40","doi-asserted-by":"publisher","first-page":"D100","DOI":"10.1093\/nar\/gky1128","volume":"47","author":"I Yevshin","year":"2019","unstructured":"Yevshin I, Sharipov R, Kolmykov S, et al. GTRD: a database on gene transcription regulation-2019 update. Nucleic Acids Res. 2019;47(D1):D100\u20135.","journal-title":"Nucleic Acids Res"},{"issue":"D1","key":"611_CR41","doi-asserted-by":"publisher","first-page":"D638","DOI":"10.1093\/nar\/gkac1000","volume":"51","author":"D Szklarczyk","year":"2023","unstructured":"Szklarczyk D, Kirsch R, Koutrouli M, et al. The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest. Nucleic Acids Res. 2023;51(D1):D638\u201346.","journal-title":"Nucleic Acids Res"},{"issue":"11","key":"611_CR42","doi-asserted-by":"publisher","first-page":"2498","DOI":"10.1101\/gr.1239303","volume":"13","author":"P Shannon","year":"2003","unstructured":"Shannon P, Markiel A, Ozier O, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003;13(11):2498\u2013504.","journal-title":"Genome Res"},{"issue":"1","key":"611_CR43","doi-asserted-by":"publisher","first-page":"btac830","DOI":"10.1093\/bioinformatics\/btac830","volume":"39","author":"JT Robinson","year":"2023","unstructured":"Robinson JT, Thorvaldsdottir H, Turner D, et al. igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). Bioinformatics. 2023;39(1):btac830.","journal-title":"Bioinformatics"},{"issue":"D1","key":"611_CR44","doi-asserted-by":"publisher","first-page":"D174","DOI":"10.1093\/nar\/gkad1059","volume":"52","author":"I Rauluseviciute","year":"2024","unstructured":"Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, et al. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res. 2024;52(D1):D174-d182.","journal-title":"Nucleic Acids Res"},{"issue":"8","key":"611_CR45","doi-asserted-by":"publisher","first-page":"1296","DOI":"10.1093\/bioinformatics\/btu817","volume":"31","author":"B Hu","year":"2015","unstructured":"Hu B, Jin J, Guo AY, et al. GSDS 2.0: an upgraded gene feature visualization server. Bioinformatics. 2015;31(8):1296\u20137.","journal-title":"Bioinformatics"},{"issue":"1","key":"611_CR46","doi-asserted-by":"publisher","first-page":"212","DOI":"10.1186\/s12864-026-12542-z","volume":"27","author":"P Liu","year":"2026","unstructured":"Liu P, Liu R, You F, et al. Integrated analysis of lncRNA-miRNA-mRNA networks reveals stage-specific molecular regulation of oogenesis in Chinese alligator (Alligator sinensis). BMC Genomics. 2026;27(1):212.","journal-title":"BMC Genomics"},{"issue":"14","key":"611_CR47","doi-asserted-by":"publisher","first-page":"eadm7980","DOI":"10.1126\/sciadv.adm7980","volume":"11","author":"T Pan","year":"2025","unstructured":"Pan T, Miao J, Sun K, et al. Genomic insights and the conservation potential of captive breeding: the case of Chinese alligator. Sci Adv. 2025;11(14):eadm7980.","journal-title":"Sci Adv"},{"issue":"1","key":"611_CR48","doi-asserted-by":"publisher","first-page":"169","DOI":"10.1186\/s12864-018-4559-3","volume":"19","author":"J Ou","year":"2018","unstructured":"Ou J, Liu H, Yu J, et al. ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data. BMC Genomics. 2018;19(1):169.","journal-title":"BMC Genomics"},{"issue":"10","key":"611_CR49","doi-asserted-by":"publisher","first-page":"959","DOI":"10.1038\/nmeth.4396","volume":"14","author":"MR Corces","year":"2017","unstructured":"Corces MR, Trevino AE, Hamilton EG, et al. An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues. Nat Methods. 2017;14(10):959\u201362.","journal-title":"Nat Methods"},{"issue":"W1","key":"611_CR50","doi-asserted-by":"publisher","first-page":"W160","DOI":"10.1093\/nar\/gkw257","volume":"44","author":"F Ram\u00edrez","year":"2016","unstructured":"Ram\u00edrez F, Ryan DP, Gr\u00fcning B, et al. deepTools2: a next generation web server for deep-sequencing data analysis. Nucleic Acids Res. 2016;44(W1):W160-165.","journal-title":"Nucleic Acids Res"},{"issue":"8","key":"611_CR51","doi-asserted-by":"publisher","first-page":"1529","DOI":"10.1101\/gr.276766.122","volume":"32","author":"TJ Hansen","year":"2022","unstructured":"Hansen TJ, Hodges E. ATAC-STARR-seq reveals transcription factor-bound activators and silencers within chromatin-accessible regions of the human genome. Genome Res. 2022;32(8):1529\u201341.","journal-title":"Genome Res"},{"key":"611_CR52","doi-asserted-by":"publisher","first-page":"179","DOI":"10.1186\/1471-2105-11-179","volume":"11","author":"TL Bailey","year":"2010","unstructured":"Bailey TL, Bod\u00e9n M, Whitington T, et al. The value of position-specific priors in motif discovery using MEME. BMC Bioinformatics. 2010;11:179.","journal-title":"BMC Bioinformatics"},{"key":"611_CR53","doi-asserted-by":"publisher","first-page":"107295","DOI":"10.1016\/j.anireprosci.2023.107295","volume":"255","author":"Y Wen","year":"2023","unstructured":"Wen Y, Zhan J, Li C, et al. G-protein couple receptor (GPER1) plays an important role during ovarian folliculogenesis and early development of the Chinese Alligator. Anim Reprod Sci. 2023;255:107295.","journal-title":"Anim Reprod Sci"},{"key":"611_CR54","doi-asserted-by":"publisher","first-page":"4040","DOI":"10.1016\/j.csbj.2022.07.025","volume":"20","author":"M Bentsen","year":"2022","unstructured":"Bentsen M, Heger V, Schultheis H, et al. TF-COMB - discovering grammar of transcription factor binding sites. Comput Struct Biotechnol J. 2022;20:4040\u201351.","journal-title":"Comput Struct Biotechnol J"},{"issue":"12","key":"611_CR55","doi-asserted-by":"publisher","first-page":"3019","DOI":"10.3390\/cancers13123019","volume":"13","author":"E Bezzecchi","year":"2021","unstructured":"Bezzecchi E, Bernardini A, Ronzio M, et al. NF-Y subunits overexpression in HNSCC. Cancers (Basel). 2021;13(12):3019.","journal-title":"Cancers (Basel)"},{"issue":"5","key":"611_CR56","doi-asserted-by":"publisher","first-page":"630","DOI":"10.1016\/j.bbagrm.2016.10.008","volume":"1860","author":"M Yamaguchi","year":"2017","unstructured":"Yamaguchi M, Ali MS, Yoshioka Y, et al. NF-Y in invertebrates. Biochim Biophys Acta (BBA). 2017;1860(5):630\u20135.","journal-title":"Biochim Biophys Acta (BBA)"},{"issue":"2","key":"611_CR57","doi-asserted-by":"publisher","first-page":"e11","DOI":"10.1093\/nar\/gky1117","volume":"47","author":"A Youn","year":"2019","unstructured":"Youn A, Marquez EJ, Lawlor N, et al. BiFET: sequencing bias-free transcription factor footprint enrichment test. Nucleic Acids Res. 2019;47(2):e11.","journal-title":"Nucleic Acids Res"},{"issue":"13","key":"611_CR58","doi-asserted-by":"publisher","first-page":"3657","DOI":"10.1016\/j.celrep.2019.02.106","volume":"26","author":"Q Zhu","year":"2019","unstructured":"Zhu Q, Ding L, Zi Z, et al. Viral-Mediated AURKB cleavage promotes cell segregation and tumorigenesis. Cell Rep. 2019;26(13):3657-3671.e3655.","journal-title":"Cell Rep"},{"issue":"10","key":"611_CR59","doi-asserted-by":"publisher","first-page":"3909","DOI":"10.7150\/thno.97842","volume":"14","author":"X Chen","year":"2024","unstructured":"Chen X, Du S, Zhang Y, et al. Caspase-mediated AURKA cleavage at Asp(132) is essential for paclitaxel to elicit cell apoptosis. Theranostics. 2024;14(10):3909\u201326.","journal-title":"Theranostics"},{"issue":"48","key":"611_CR60","doi-asserted-by":"publisher","first-page":"9678","DOI":"10.1021\/bi3010158","volume":"51","author":"G Macleod","year":"2012","unstructured":"Macleod G, Varmuza S. Tandem affinity purification in transgenic mouse embryonic stem cells identifies DDOST as a novel PPP1CC2 interacting protein. Biochemistry. 2012;51(48):9678\u201388.","journal-title":"Biochemistry"},{"key":"611_CR61","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1139\/gen-2024-0111","volume":"68","author":"M Burns","year":"2025","unstructured":"Burns M, Borgal L. Asp\/ASPM phospho-regulation throughout the cell cycle. Genome. 2025;68:1\u201310.","journal-title":"Genome"},{"issue":"6","key":"611_CR62","doi-asserted-by":"publisher","first-page":"152072","DOI":"10.1016\/j.acthis.2023.152072","volume":"125","author":"J Mao","year":"2023","unstructured":"Mao J, Shen J, Lu X, et al. MCM5 is an oncogene of colon adenocarcinoma and promotes progression through cell cycle control. Acta Histochem. 2023;125(6):152072.","journal-title":"Acta Histochem"},{"issue":"10","key":"611_CR63","doi-asserted-by":"publisher","first-page":"1134","DOI":"10.1038\/ng.2760","volume":"45","author":"TI Zack","year":"2013","unstructured":"Zack TI, Schumacher SE, Carter SL, et al. Pan-cancer patterns of somatic copy number alteration. Nat Genet. 2013;45(10):1134\u201340.","journal-title":"Nat Genet"},{"issue":"2","key":"611_CR64","doi-asserted-by":"publisher","first-page":"307","DOI":"10.1016\/j.ydbio.2016.06.021","volume":"418","author":"RM Warga","year":"2016","unstructured":"Warga RM, Wicklund A, Webster SE, et al. Progressive loss of RacGAP1\/ogre activity has sequential effects on cytokinesis and zebrafish development. Dev Biol. 2016;418(2):307\u201322.","journal-title":"Dev Biol"},{"issue":"12","key":"611_CR65","doi-asserted-by":"publisher","first-page":"1931","DOI":"10.1002\/jcb.30498","volume":"124","author":"L Yu","year":"2023","unstructured":"Yu L, Kong N, Lin Y, et al. NUSAP1 regulates mouse oocyte meiotic maturation. J Cell Biochem. 2023;124(12):1931\u201347.","journal-title":"J Cell Biochem"},{"issue":"1","key":"611_CR66","doi-asserted-by":"publisher","first-page":"e23565","DOI":"10.1002\/jcla.23565","volume":"35","author":"H Wang","year":"2021","unstructured":"Wang H, Zhang Z, Yan Z, et al. CKS1B promotes cell proliferation and invasion by activating STAT3\/PD-L1 and phosphorylation of Akt signaling in papillary thyroid carcinoma. J Clin Lab Anal. 2021;35(1):e23565.","journal-title":"J Clin Lab Anal"},{"issue":"10","key":"611_CR67","doi-asserted-by":"publisher","first-page":"e12899","DOI":"10.1111\/cpr.12899","volume":"53","author":"M Wang","year":"2020","unstructured":"Wang M, Chen X, Wu Y, et al. RpS13 controls the homeostasis of germline stem cell niche through Rho1-mediated signals in the Drosophila testis. Cell Prolif. 2020;53(10):e12899.","journal-title":"Cell Prolif"},{"key":"611_CR68","doi-asserted-by":"publisher","first-page":"119147","DOI":"10.1016\/j.gep.2020.119147","volume":"38","author":"A Cheong","year":"2020","unstructured":"Cheong A, Lingutla R, Mager J. Expression analysis of mammalian mitochondrial ribosomal protein genes. Gene Expr Patterns. 2020;38:119147.","journal-title":"Gene Expr Patterns"},{"issue":"6","key":"611_CR69","doi-asserted-by":"publisher","first-page":"2996","DOI":"10.1093\/nar\/gkz105","volume":"47","author":"S Zhao","year":"2019","unstructured":"Zhao S, Chen Y, Chen F, et al. Sas10 controls ribosome biogenesis by stabilizing Mpp10 and delivering the Mpp10-Imp3-Imp4 complex to nucleolus. Nucleic Acids Res. 2019;47(6):2996\u20133012.","journal-title":"Nucleic Acids Res"},{"issue":"4","key":"611_CR70","doi-asserted-by":"publisher","first-page":"e24","DOI":"10.1093\/nar\/gky1288","volume":"47","author":"K Chwalenia","year":"2019","unstructured":"Chwalenia K, Qin F, Singh S, et al. A cell-based splicing reporter system to identify regulators of cis-splicing between adjacent genes. Nucleic Acids Res. 2019;47(4):e24.","journal-title":"Nucleic Acids Res"},{"issue":"5","key":"611_CR71","doi-asserted-by":"publisher","first-page":"e3412","DOI":"10.1002\/brb3.3412","volume":"14","author":"X Zhang","year":"2024","unstructured":"Zhang X, Liu Y, Guo B, et al. Identification of key mRNAs and signaling pathways in obsessive compulsive disorder based on weighted gene co-expression network analysis and cytoHubba plugin. Brain Behav. 2024;14(5):e3412.","journal-title":"Brain Behav"},{"issue":"21","key":"611_CR72","doi-asserted-by":"publisher","first-page":"3458","DOI":"10.1016\/j.cub.2018.08.052","volume":"28","author":"AL Nguyen","year":"2018","unstructured":"Nguyen AL, Drutovic D, Vazquez BN, et al. Genetic interactions between the Aurora kinases reveal new requirements for AURKB and AURKC during oocyte meiosis. Curr Biol. 2018;28(21):3458-3468.e3455.","journal-title":"Curr Biol"},{"issue":"4","key":"611_CR73","doi-asserted-by":"publisher","first-page":"839","DOI":"10.1016\/S1097-2765(05)00092-4","volume":"6","author":"A Kumagai","year":"2000","unstructured":"Kumagai A, Dunphy WG. Claspin, a novel protein required for the activation of Chk1 during a DNA replication checkpoint response in Xenopus egg extracts. Mol Cell. 2000;6(4):839\u201349.","journal-title":"Mol Cell"},{"issue":"1","key":"611_CR74","doi-asserted-by":"publisher","first-page":"7306","DOI":"10.1038\/s41467-024-51538-9","volume":"15","author":"LM Reuter","year":"2024","unstructured":"Reuter LM, Khadayate SP, Mossler A, et al. MCM2-7 loading-dependent ORC release ensures genome-wide origin licensing. Nat Commun. 2024;15(1):7306.","journal-title":"Nat Commun"},{"issue":"7","key":"611_CR75","doi-asserted-by":"publisher","first-page":"1549","DOI":"10.1002\/j.1460-2075.1994.tb06417.x","volume":"13","author":"S Jinno","year":"1994","unstructured":"Jinno S, Suto K, Nagata A, et al. Cdc25A is a novel phosphatase functioning early in the cell cycle. EMBO J. 1994;13(7):1549\u201356.","journal-title":"EMBO J"},{"issue":"4","key":"611_CR76","doi-asserted-by":"publisher","first-page":"2491","DOI":"10.1128\/jvi.69.4.2491-2500.1995","volume":"69","author":"TF Kowalik","year":"1995","unstructured":"Kowalik TF, Degregori J, Schwarz JK, et al. E2F1 overexpression in quiescent fibroblasts leads to induction of cellular DNA synthesis and apoptosis. J Virol. 1995;69(4):2491\u2013500.","journal-title":"J Virol"},{"issue":"4","key":"611_CR77","doi-asserted-by":"publisher","first-page":"e1009327","DOI":"10.1371\/journal.pgen.1009327","volume":"17","author":"CS Blengini","year":"2021","unstructured":"Blengini CS, Ibrahimian P, Vaskovicova M, et al. Aurora kinase A is essential for meiosis in mouse oocytes. PLoS Genet. 2021;17(4):e1009327.","journal-title":"PLoS Genet"},{"issue":"11","key":"611_CR78","doi-asserted-by":"publisher","first-page":"894","DOI":"10.1016\/S0960-9822(02)00848-5","volume":"12","author":"M Murata-Hori","year":"2002","unstructured":"Murata-Hori M, Wang YL. The kinase activity of Aurora B is required for kinetochore-microtubule interactions during mitosis. Curr Biol. 2002;12(11):894\u20139.","journal-title":"Curr Biol"},{"issue":"2","key":"611_CR79","doi-asserted-by":"publisher","first-page":"163","DOI":"10.1016\/S1097-2765(00)80126-4","volume":"2","author":"G Fang","year":"1998","unstructured":"Fang G, Yu H, Kirschner MW. Direct binding of CDC20 protein family members activates the anaphase-promoting complex in mitosis and G1. Mol Cell. 1998;2(2):163\u201371.","journal-title":"Mol Cell"},{"issue":"2","key":"611_CR80","doi-asserted-by":"publisher","first-page":"470","DOI":"10.1093\/emboj\/17.2.470","volume":"17","author":"AM Fry","year":"1998","unstructured":"Fry AM, Meraldi P, Nigg EA. A centrosomal function for the human Nek2 protein kinase, a member of the NIMA family of cell cycle regulators. EMBO J. 1998;17(2):470\u201381.","journal-title":"EMBO J"},{"issue":"7","key":"611_CR81","doi-asserted-by":"publisher","first-page":"1175","DOI":"10.1083\/jcb.200111052","volume":"157","author":"C Mollinari","year":"2002","unstructured":"Mollinari C, Kleman JP, Jiang W, et al. PRC1 is a microtubule binding and bundling protein essential to maintain the mitotic spindle midzone. J Cell Biol. 2002;157(7):1175\u201386.","journal-title":"J Cell Biol"},{"issue":"11","key":"611_CR82","doi-asserted-by":"publisher","first-page":"1256","DOI":"10.1002\/embj.201387330","volume":"33","author":"T Winters","year":"2014","unstructured":"Winters T, Mcnicoll F, Jessberger R. Meiotic cohesin STAG3 is required for chromosome axis formation and sister chromatid cohesion. Embo J. 2014;33(11):1256\u201370.","journal-title":"Embo J"},{"issue":"3","key":"611_CR83","doi-asserted-by":"publisher","first-page":"375","DOI":"10.1016\/S0092-8674(00)81876-0","volume":"88","author":"S Keeney","year":"1997","unstructured":"Keeney S, Giroux CN, Kleckner N. Meiosis-specific DNA double-strand breaks are catalyzed by Spo11, a member of a widely conserved protein family. Cell. 1997;88(3):375\u201384.","journal-title":"Cell"},{"issue":"7","key":"611_CR84","doi-asserted-by":"publisher","first-page":"755","DOI":"10.1101\/gad.2028911","volume":"25","author":"J Chen","year":"2011","unstructured":"Chen J, Melton C, Suh N, et al. Genome-wide analysis of translation reveals a critical role for deleted in azoospermia-like (Dazl) at the oocyte-to-zygote transition. Genes Dev. 2011;25(7):755\u201366.","journal-title":"Genes Dev"},{"issue":"5687","key":"611_CR85","doi-asserted-by":"publisher","first-page":"1157","DOI":"10.1126\/science.1099755","volume":"305","author":"A Rajkovic","year":"2004","unstructured":"Rajkovic A, Pangas SA, Ballow D, et al. NOBOX deficiency disrupts early folliculogenesis and oocyte-specific gene expression. Science. 2004;305(5687):1157\u20139.","journal-title":"Science"},{"issue":"1","key":"611_CR86","doi-asserted-by":"publisher","first-page":"752","DOI":"10.1186\/1471-2164-15-752","volume":"15","author":"T Lesluyes","year":"2014","unstructured":"Lesluyes T, Johnson J, Machanick P, et al. Differential motif enrichment analysis of paired ChIP-seq experiments. BMC Genomics. 2014;15(1):752.","journal-title":"BMC Genomics"},{"issue":"5","key":"611_CR87","doi-asserted-by":"publisher","first-page":"571","DOI":"10.1016\/j.bbagrm.2016.09.006","volume":"1860","author":"V Nardone","year":"2017","unstructured":"Nardone V, Chaves-Sanjuan A, Nardini M. Structural determinants for NF-Y\/DNA interaction at the CCAAT box. Biochim Biophys Acta Gene Regul Mech. 2017;1860(5):571\u201380.","journal-title":"Biochim Biophys Acta Gene Regul Mech"},{"issue":"6","key":"611_CR88","doi-asserted-by":"publisher","first-page":"E645","DOI":"10.1073\/pnas.1312523111","volume":"111","author":"TT Marstrand","year":"2014","unstructured":"Marstrand TT, Storey JD. Identifying and mapping cell-type-specific chromatin programming of gene expression. Proc Natl Acad Sci U S A. 2014;111(6):E645-654.","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"1","key":"611_CR89","doi-asserted-by":"publisher","first-page":"248","DOI":"10.1016\/j.cell.2018.02.028","volume":"173","author":"L Gao","year":"2018","unstructured":"Gao L, Wu K, Liu Z, et al. Chromatin accessibility landscape in human early embryos and its association with evolution. Cell. 2018;173(1):248-259.e215.","journal-title":"Cell"},{"issue":"2","key":"611_CR90","doi-asserted-by":"publisher","first-page":"110","DOI":"10.1038\/s41422-018-0125-4","volume":"29","author":"C Gu","year":"2019","unstructured":"Gu C, Liu S, Wu Q, et al. Integrative single-cell analysis of transcriptome, DNA methylome and chromatin accessibility in mouse oocytes. Cell Res. 2019;29(2):110\u201323.","journal-title":"Cell Res"},{"issue":"9","key":"611_CR91","doi-asserted-by":"publisher","first-page":"1641","DOI":"10.1016\/j.stem.2021.04.012","volume":"28","author":"R Yan","year":"2021","unstructured":"Yan R, Gu C, You D, et al. Decoding dynamic epigenetic landscapes in human oocytes using single-cell multi-omics sequencing. Cell Stem Cell. 2021;28(9):1641-1656.e1647.","journal-title":"Cell Stem Cell"},{"issue":"1","key":"611_CR92","doi-asserted-by":"publisher","first-page":"3331","DOI":"10.1038\/s41467-018-05841-x","volume":"9","author":"J Brind'amour","year":"2018","unstructured":"Brind\u2019amour J, Kobayashi H, Richard Albert J, et al. LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation. Nat Commun. 2018;9(1):3331.","journal-title":"Nat Commun"},{"issue":"3","key":"611_CR93","doi-asserted-by":"publisher","first-page":"300","DOI":"10.1080\/15592294.2020.1795602","volume":"16","author":"H Ming","year":"2021","unstructured":"Ming H, Sun J, Pasquariello R, et al. The landscape of accessible chromatin in bovine oocytes and early embryos. Epigenetics. 2021;16(3):300\u201312.","journal-title":"Epigenetics"},{"key":"611_CR94","doi-asserted-by":"publisher","first-page":"196","DOI":"10.3389\/fcell.2020.00196","volume":"8","author":"S Hu","year":"2020","unstructured":"Hu S, Yang S, Lu Y, et al. Dynamics of the transcriptome and accessible chromatin landscapes during early goose ovarian development. Front Cell Dev Biol. 2020;8:196.","journal-title":"Front Cell Dev Biol"},{"key":"611_CR95","doi-asserted-by":"publisher","first-page":"e32341","DOI":"10.7554\/eLife.32341","volume":"7","author":"GN Aughey","year":"2018","unstructured":"Aughey GN, Estacio Gomez A, Thomson J, et al. CATaDa reveals global remodelling of chromatin accessibility during stem cell differentiation in vivo. Elife. 2018;7:e32341.","journal-title":"Elife"},{"issue":"4","key":"611_CR96","doi-asserted-by":"publisher","first-page":"633","DOI":"10.1101\/gr.130997.111","volume":"22","author":"S Guibert","year":"2012","unstructured":"Guibert S, Forn\u00e9 T, Weber M. Global profiling of DNA methylation erasure in mouse primordial germ cells. Genome Res. 2012;22(4):633\u201341.","journal-title":"Genome Res"},{"issue":"4","key":"611_CR97","doi-asserted-by":"publisher","first-page":"243","DOI":"10.1093\/abbs\/gmq015","volume":"42","author":"J Lan","year":"2010","unstructured":"Lan J, Hua S, He X, et al. DNA methyltransferases and methyl-binding proteins of mammals. Acta Biochim Biophys Sin (Shanghai). 2010;42(4):243\u201352.","journal-title":"Acta Biochim Biophys Sin (Shanghai)"},{"issue":"2","key":"611_CR98","doi-asserted-by":"publisher","first-page":"1336","DOI":"10.1074\/jbc.M209635200","volume":"278","author":"C Romier","year":"2003","unstructured":"Romier C, Cocchiarella F, Mantovani R, et al. The NF-YB\/NF-YC structure gives insight into DNA binding and transcription regulation by CCAAT factor NF-Y. J Biol Chem. 2003;278(2):1336\u201345.","journal-title":"J Biol Chem"},{"issue":"24","key":"611_CR99","doi-asserted-by":"publisher","first-page":"4127","DOI":"10.4161\/cc.8.24.10240","volume":"8","author":"D Dolfini","year":"2009","unstructured":"Dolfini D, Zambelli F, Pavesi G, et al. A perspective of promoter architecture from the CCAAT box. Cell Cycle. 2009;8(24):4127\u201337.","journal-title":"Cell Cycle"},{"issue":"1","key":"611_CR100","doi-asserted-by":"publisher","first-page":"6013","DOI":"10.1038\/s41467-021-26293-w","volume":"12","author":"G Rigillo","year":"2021","unstructured":"Rigillo G, Basile V, Belluti S, et al. The transcription factor NF-Y participates to stem cell fate decision and regeneration in adult skeletal muscle. Nat Commun. 2021;12(1):6013.","journal-title":"Nat Commun"},{"issue":"4","key":"611_CR101","doi-asserted-by":"publisher","first-page":"2347","DOI":"10.1074\/jbc.M507712200","volume":"281","author":"V Basile","year":"2006","unstructured":"Basile V, Mantovani R, Imbriano C. DNA damage promotes histone deacetylase 4 nuclear localization and repression of G2\/M promoters, via p53 C-terminal lysines. J Biol Chem. 2006;281(4):2347\u201357.","journal-title":"J Biol Chem"},{"issue":"10","key":"611_CR102","doi-asserted-by":"publisher","first-page":"798","DOI":"10.1038\/nrm2257","volume":"8","author":"S Ruchaud","year":"2007","unstructured":"Ruchaud S, Carmena M, Earnshaw WC. Chromosomal passengers: conducting cell division. Nat Rev Mol Cell Biol. 2007;8(10):798\u2013812.","journal-title":"Nat Rev Mol Cell Biol"},{"issue":"14","key":"611_CR103","doi-asserted-by":"publisher","first-page":"2371","DOI":"10.1091\/mbc.e10-02-0170","volume":"21","author":"KT Yang","year":"2010","unstructured":"Yang KT, Li SK, Chang CC, et al. Aurora-C kinase deficiency causes cytokinesis failure in meiosis I and production of large polyploid oocytes in mice. Mol Biol Cell. 2010;21(14):2371\u201383.","journal-title":"Mol Biol Cell"},{"key":"611_CR104","doi-asserted-by":"publisher","first-page":"178","DOI":"10.3389\/fonc.2015.00178","volume":"5","author":"KT Yang","year":"2015","unstructured":"Yang KT, Tang CJ, Tang TK. Possible role of Aurora-C in meiosis. Front Oncol. 2015;5:178.","journal-title":"Front Oncol"},{"issue":"5","key":"611_CR105","doi-asserted-by":"publisher","first-page":"581","DOI":"10.1016\/j.bbagrm.2016.10.007","volume":"1860","author":"F Zambelli","year":"2017","unstructured":"Zambelli F, Pavesi G. Genome wide features, distribution and correlations of NF-Y binding sites. Biochim Biophys Acta Gene Regul Mech. 2017;1860(5):581\u20139.","journal-title":"Biochim Biophys Acta Gene Regul Mech"},{"issue":"6","key":"611_CR106","doi-asserted-by":"publisher","first-page":"2047","DOI":"10.1128\/MCB.01861-07","volume":"28","author":"M Ceribelli","year":"2008","unstructured":"Ceribelli M, Dolfini D, Merico D, et al. The histone-like NF-Y is a bifunctional transcription factor. Mol Cell Biol. 2008;28(6):2047\u201358.","journal-title":"Mol Cell Biol"},{"issue":"3","key":"611_CR107","doi-asserted-by":"publisher","first-page":"dev200074","DOI":"10.1242\/dev.200074","volume":"149","author":"MA Gura","year":"2022","unstructured":"Gura MA, Relovsk\u00e1 S, Abt KM, et al. TAF4b transcription networks regulating early oocyte differentiation. Development. 2022;149(3):dev200074.","journal-title":"Development"},{"issue":"33","key":"611_CR108","doi-asserted-by":"publisher","first-page":"30435","DOI":"10.1074\/jbc.M304606200","volume":"278","author":"G Caretti","year":"2003","unstructured":"Caretti G, Salsi V, Vecchi C, et al. Dynamic recruitment of NF-Y and histone acetyltransferases on cell-cycle promoters. J Biol Chem. 2003;278(33):30435\u201340.","journal-title":"J Biol Chem"},{"issue":"19","key":"611_CR109","doi-asserted-by":"publisher","first-page":"2282","DOI":"10.1038\/onc.2010.588","volume":"30","author":"M Dalvai","year":"2011","unstructured":"Dalvai M, Mondesert O, Bourdon JC, et al. Cdc25B is negatively regulated by p53 through Sp1 and NF-Y transcription factors. Oncogene. 2011;30(19):2282\u20138.","journal-title":"Oncogene"},{"issue":"9","key":"611_CR110","doi-asserted-by":"publisher","first-page":"6642","DOI":"10.1074\/jbc.M210065200","volume":"278","author":"V Salsi","year":"2003","unstructured":"Salsi V, Caretti G, Wasner M, et al. Interactions between p300 and multiple NF-Y trimers govern cyclin B2 promoter function. J Biol Chem. 2003;278(9):6642\u201350.","journal-title":"J Biol Chem"},{"issue":"1-3","key":"611_CR111","doi-asserted-by":"publisher","first-page":"66","DOI":"10.1016\/S0014-5793(03)00028-0","volume":"536","author":"M Wasner","year":"2003","unstructured":"Wasner M, Tsch\u00f6p K, Spiesbach K, et al. Cyclin B1 transcription is enhanced by the p300 coactivator and regulated during the cell cycle by a CHR-dependent repression mechanism. FEBS Lett. 2003;536(1\u20133):66\u201370.","journal-title":"FEBS Lett"},{"issue":"1-2","key":"611_CR112","doi-asserted-by":"publisher","first-page":"132","DOI":"10.1016\/j.cell.2012.11.047","volume":"152","author":"M Nardini","year":"2013","unstructured":"Nardini M, Gnesutta N, Donati G, et al. Sequence-specific transcription factor NF-Y displays histone-like DNA binding and H2B-like ubiquitination. Cell. 2013;152(1\u20132):132\u201343.","journal-title":"Cell"},{"issue":"5","key":"611_CR113","doi-asserted-by":"publisher","first-page":"708","DOI":"10.1016\/j.molcel.2014.07.005","volume":"55","author":"AJ Oldfield","year":"2014","unstructured":"Oldfield AJ, Yang P, Conway AE, et al. Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors. Mol Cell. 2014;55(5):708\u201322.","journal-title":"Mol Cell"},{"key":"611_CR114","doi-asserted-by":"publisher","DOI":"10.1093\/icb\/40.3.438","author":"LJ Guillette","year":"2000","unstructured":"Guillette LJ, et al. Alligators and endocrine disrupting contaminants: a current perspective. Am Zool. 2000. https:\/\/doi.org\/10.1093\/icb\/40.3.438.","journal-title":"Am Zool"},{"key":"611_CR115","doi-asserted-by":"publisher","DOI":"10.1016\/j.mce.2022.111751","author":"M Hale","year":"2022","unstructured":"Hale M, Koal T, Pham TH, et al. Transcriptional networks underlying a primary ovarian insufficiency disorder in alligators naturally exposed to EDCs. SSRN Electron J. 2022. https:\/\/doi.org\/10.1016\/j.mce.2022.111751.","journal-title":"SSRN Electron J"},{"key":"611_CR116","doi-asserted-by":"publisher","first-page":"RD25054","DOI":"10.1071\/RD25054","volume":"37","author":"D Wu","year":"2025","unstructured":"Wu D, Liang Z, Li Z, et al. Transcription factor-mediated gene regulatory networks in the formation of oocytes. Reprod Fertil Dev. 2025;37:RD25054.","journal-title":"Reprod Fertil Dev"}],"container-title":["Frontiers in Zoology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/article\/10.1186\/s12983-026-00611-8","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12983-026-00611-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12983-026-00611-8.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,6,17]],"date-time":"2026-06-17T04:06:28Z","timestamp":1781669188000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1186\/s12983-026-00611-8"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,4,29]]},"references-count":116,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2026,12]]}},"alternative-id":["611"],"URL":"https:\/\/doi.org\/10.1186\/s12983-026-00611-8","relation":{},"ISSN":["1742-9994"],"issn-type":[{"value":"1742-9994","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,4,29]]},"assertion":[{"value":"30 December 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"12 April 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"29 April 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The animal protocol was conducted following the Regulation for the Administration of Experimental Animal Licenses (No. 593, Version 2, 2001) issued by the Ministry of Science and Technology of the People\u2019s Republic of China, and all experimental procedures were approved by the Academic Ethics Committee of Anhui Normal University (Project identification number: AHNU-ET2023023; Approval date: March 8, 2023).","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"Not Applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare no competing interests.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interest"}}],"article-number":"24"}}