{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,29]],"date-time":"2025-10-29T18:38:47Z","timestamp":1761763127183},"reference-count":62,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2024,9,27]],"date-time":"2024-09-27T00:00:00Z","timestamp":1727395200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"},{"start":{"date-parts":[[2024,9,27]],"date-time":"2024-09-27T00:00:00Z","timestamp":1727395200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"}],"funder":[{"name":"scholarship provided by the Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior\u2014Brasil","award":["CAPES","CAPES"],"award-info":[{"award-number":["CAPES","CAPES"]}]},{"name":"scholarship from HCFMUSP with funds donated by NUBANK under the #HCCOMVIDA scheme","award":["HCFMUSP"],"award-info":[{"award-number":["HCFMUSP"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Virol J"],"DOI":"10.1186\/s12985-024-02507-7","type":"journal-article","created":{"date-parts":[[2024,9,27]],"date-time":"2024-09-27T10:02:34Z","timestamp":1727431354000},"update-policy":"http:\/\/dx.doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":2,"title":["Characterization of multiple human papillomavirus types in the human vagina following ovarian hormonal stimulation"],"prefix":"10.1186","volume":"21","author":[{"given":"Endrya do Socorro","family":"Foro Ramos","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Roseane","family":"da Silva Couto","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tania Regina","family":"Tozetto-Mendoza","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Pietro","family":"Bortoletto","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Erick Matheus Garcia","family":"Barbosa","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Noely Evangelista","family":"Ferreira","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Iara M.","family":"Linhares","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Steven D.","family":"Spandorfer","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Antonio Charlys","family":"da Costa","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Elcio","family":"Leal","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Maria Cassia","family":"Mendes-Correa","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Steven S.","family":"Witkin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2024,9,27]]},"reference":[{"key":"2507_CR1","doi-asserted-by":"publisher","unstructured":"Liu Z, Yang S, Wang Y, Shen Q, Yang Y, Deng X, Zhang W, Delwart E. Identification of a Novel Human Papillomavirus by Metagenomic Analysis of Vaginal Swab Samples from pregnant women. Virol J. 2016;13. https:\/\/doi.org\/10.1186\/s12985-016-0583-6.","DOI":"10.1186\/s12985-016-0583-6"},{"key":"2507_CR2","doi-asserted-by":"publisher","first-page":"65","DOI":"10.1016\/j.virol.2021.10.007","volume":"565","author":"S Kraberger","year":"2022","unstructured":"Kraberger S, Austin C, Farkas K, Desvignes T, Postlethwait JH, Fontenele RS, Schmidlin K, Bradley RW, Warzybok P, Van Doorslaer K, et al. Discovery of Novel Fish papillomaviruses: from the Antarctic to the commercial Fish Market. Virology. 2022;565:65\u201372. https:\/\/doi.org\/10.1016\/j.virol.2021.10.007.","journal-title":"Virology"},{"key":"2507_CR3","doi-asserted-by":"publisher","first-page":"304","DOI":"10.1016\/j.virol.2009.07.012","volume":"393","author":"Z Chen","year":"2009","unstructured":"Chen Z, Van Doorslaer K, DeSalle R, Wood CE, Kaplan JR, Wagner JD, Burk RD. Genomic diversity and Interspecies Host Infection of \u039112 Macaca Fascicularis Papillomaviruses (MfPVs). Virology. 2009;393:304\u201310. https:\/\/doi.org\/10.1016\/j.virol.2009.07.012.","journal-title":"Virology"},{"key":"2507_CR4","doi-asserted-by":"publisher","first-page":"989","DOI":"10.1099\/jgv.0.001105","volume":"99","author":"K Van Doorslaer","year":"2018","unstructured":"Van Doorslaer K, Chen Z, Bernard H-U, Chan PKS, DeSalle R, Dillner J, Forslund O, Haga T, McBride AA, Villa LL, et al. ICTV Virus Taxonomy Profile: Papillomaviridae. J Gen Virol. 2018;99:989\u201390. https:\/\/doi.org\/10.1099\/jgv.0.001105.","journal-title":"J Gen Virol"},{"key":"2507_CR5","doi-asserted-by":"publisher","first-page":"35","DOI":"10.1016\/j.virol.2013.07.020","volume":"445","author":"M Bergvall","year":"2013","unstructured":"Bergvall M, Melendy T, Archambault J. The E1 proteins. Virology. 2013;445:35\u201356. https:\/\/doi.org\/10.1016\/j.virol.2013.07.020.","journal-title":"Virology"},{"key":"2507_CR6","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1016\/j.virol.2013.06.006","volume":"445","author":"AA McBride","year":"2013","unstructured":"McBride AA, The Papillomavirus E, Proteins. Virology. 2013;445:57\u201379. https:\/\/doi.org\/10.1016\/j.virol.2013.06.006.","journal-title":"Virology"},{"key":"2507_CR7","doi-asserted-by":"publisher","unstructured":"Willemsen A, Bravo IG. Origin and evolution of Papillomavirus (Onco)genes and genomes. Phil Trans R Soc B. 2019;374. https:\/\/doi.org\/10.1098\/rstb.2018.0303.","DOI":"10.1098\/rstb.2018.0303"},{"key":"2507_CR8","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1016\/j.virol.2013.05.006","volume":"445","author":"D DiMaio","year":"2013","unstructured":"DiMaio D, Petti LM. The E5 proteins. Virology. 2013;445:99\u2013114. https:\/\/doi.org\/10.1016\/j.virol.2013.05.006.","journal-title":"Virology"},{"key":"2507_CR9","doi-asserted-by":"publisher","first-page":"80","DOI":"10.1016\/j.virol.2013.07.008","volume":"445","author":"J Doorbar","year":"2013","unstructured":"Doorbar J. The E4 protein; structure, function and patterns of expression. Virology. 2013;445:80\u201398. https:\/\/doi.org\/10.1016\/j.virol.2013.07.008.","journal-title":"Virology"},{"key":"2507_CR10","doi-asserted-by":"publisher","first-page":"169","DOI":"10.1016\/j.virol.2013.05.038","volume":"445","author":"CB Buck","year":"2013","unstructured":"Buck CB, Day PM, Trus BL. The Papillomavirus Major Capsid protein L1. Virology. 2013;445:169\u201374. https:\/\/doi.org\/10.1016\/j.virol.2013.05.038.","journal-title":"Virology"},{"key":"2507_CR11","doi-asserted-by":"publisher","first-page":"175","DOI":"10.1016\/j.virol.2013.04.017","volume":"445","author":"JW Wang","year":"2013","unstructured":"Wang JW, Roden RBS. L2, the minor capsid protein of Papillomavirus. Virology. 2013;445:175\u201386. https:\/\/doi.org\/10.1016\/j.virol.2013.04.017.","journal-title":"Virology"},{"key":"2507_CR12","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1016\/j.virol.2013.04.035","volume":"445","author":"H-U Bernard","year":"2013","unstructured":"Bernard H-U. Regulatory Elements in the viral genome. Virology. 2013;445:197\u2013204. https:\/\/doi.org\/10.1016\/j.virol.2013.04.035.","journal-title":"Virology"},{"key":"2507_CR13","doi-asserted-by":"publisher","first-page":"70","DOI":"10.1016\/j.virol.2010.02.002","volume":"401","author":"H-U Bernard","year":"2010","unstructured":"Bernard H-U, Burk RD, Chen Z, Van Doorslaer K, Hausen HZ, De Villiers E-M. Classification of Papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments. Virology. 2010;401:70\u20139. https:\/\/doi.org\/10.1016\/j.virol.2010.02.002.","journal-title":"Virology"},{"key":"2507_CR14","doi-asserted-by":"publisher","first-page":"D571","DOI":"10.1093\/nar\/gks984","volume":"41","author":"K Van Doorslaer","year":"2012","unstructured":"Van Doorslaer K, Tan Q, Xirasagar S, Bandaru S, Gopalan V, Mohamoud Y, Huyen Y, McBride AA. The Papillomavirus Episteme: a Central Resource for Papillomavirus sequence data and analysis. Nucleic Acids Res. 2012;41:D571\u20138. https:\/\/doi.org\/10.1093\/nar\/gks984.","journal-title":"Nucleic Acids Res"},{"key":"2507_CR15","doi-asserted-by":"publisher","first-page":"17","DOI":"10.1016\/j.virol.2004.03.033","volume":"324","author":"E-M De Villiers","year":"2004","unstructured":"De Villiers E-M, Fauquet C, Broker TR, Bernard H-U, Zur Hausen H. Classification of Papillomaviruses. Virology. 2004;324:17\u201327. https:\/\/doi.org\/10.1016\/j.virol.2004.03.033.","journal-title":"Virology"},{"key":"2507_CR16","doi-asserted-by":"publisher","first-page":"2","DOI":"10.1016\/j.virol.2013.04.023","volume":"445","author":"E-M De Villiers","year":"2013","unstructured":"De Villiers E-M. Cross-roads in the classification of Papillomaviruses. Virology. 2013;445:2\u201310. https:\/\/doi.org\/10.1016\/j.virol.2013.04.023.","journal-title":"Virology"},{"key":"2507_CR17","doi-asserted-by":"publisher","first-page":"341","DOI":"10.1016\/j.virol.2014.12.028","volume":"476","author":"D Bzhalava","year":"2015","unstructured":"Bzhalava D, Eklund C, Dillner J. International standardization and classification of human papillomavirus types. Virology. 2015;476:341\u20134. https:\/\/doi.org\/10.1016\/j.virol.2014.12.028.","journal-title":"Virology"},{"key":"2507_CR18","doi-asserted-by":"crossref","unstructured":"Harari A, Chen Z, Burk RD. Human Papillomavirus Genomics: Past, Present and Future. In Current Problems in Dermatology; Ram\u00edrez-Fort, M.K., Khan, F., Rady, P.L., Tyring, S.K., Eds.; S. Karger AG, 2014; Vol. 45, pp. 1\u201318 ISBN 9783318025262.","DOI":"10.1159\/000355952"},{"key":"2507_CR19","doi-asserted-by":"publisher","first-page":"21","DOI":"10.1016\/j.virol.2013.06.007","volume":"445","author":"HA Cubie","year":"2013","unstructured":"Cubie HA. Diseases Associated with human papillomavirus infection. Virology. 2013;445:21\u201334. https:\/\/doi.org\/10.1016\/j.virol.2013.06.007.","journal-title":"Virology"},{"key":"2507_CR20","doi-asserted-by":"publisher","first-page":"1111269","DOI":"10.3389\/fmed.2023.1111269","volume":"10","author":"Y Zhou","year":"2023","unstructured":"Zhou Y, Shi X, Liu J, Zhang L. Correlation between human papillomavirus viral load and cervical lesions classification: a review of current research. Front Med (Lausanne). 2023;10:1111269. https:\/\/doi.org\/10.3389\/fmed.2023.1111269.","journal-title":"Front Med (Lausanne)"},{"key":"2507_CR21","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/978-3-030-67452-6_1","volume":"1313","author":"FS Alhamlan","year":"2021","unstructured":"Alhamlan FS, Alfageeh MB, Al Mushait MA, Al-Badawi IA, Al-Ahdal MN. Human Papillomavirus-Associated Cancers. Adv Exp Med Biol. 2021;1313:1\u201314. https:\/\/doi.org\/10.1007\/978-3-030-67452-6_1.","journal-title":"Adv Exp Med Biol"},{"key":"2507_CR22","doi-asserted-by":"publisher","first-page":"956","DOI":"10.1007\/s10147-023-02340-y","volume":"28","author":"N Egawa","year":"2023","unstructured":"Egawa N. Papillomaviruses and Cancer: commonalities and differences in HPV Carcinogenesis at different sites of the body. Int J Clin Oncol. 2023;28:956\u201364. https:\/\/doi.org\/10.1007\/s10147-023-02340-y.","journal-title":"Int J Clin Oncol"},{"key":"2507_CR23","unstructured":"Global Cancer Burden Growing, amidst Mounting Need for Services Available online. https:\/\/www.who.int\/news\/item\/01-02-2024-global-cancer-burden-growing--amidst-mounting-need-for-services (accessed on 10 February 2024)."},{"key":"2507_CR24","doi-asserted-by":"publisher","first-page":"273","DOI":"10.1097\/OLQ.0000000000001356","volume":"48","author":"RM Lewis","year":"2021","unstructured":"Lewis RM, Laprise J-F, Gargano JW, Unger ER, Querec TD, Chesson HW, Brisson M, Markowitz LE. Estimated prevalence and incidence of Disease-Associated Human Papillomavirus types among 15- to 59-Year-Olds in the United States. Sex Trans Dis. 2021;48:273\u20137. https:\/\/doi.org\/10.1097\/OLQ.0000000000001356.","journal-title":"Sex Trans Dis"},{"key":"2507_CR25","doi-asserted-by":"publisher","first-page":"e2143582","DOI":"10.1001\/jamanetworkopen.2021.43582","volume":"5","author":"R Suk","year":"2022","unstructured":"Suk R, Hong Y-R, Rajan SS, Xie Z, Zhu Y, Spencer JC. Assessment of US Preventive Services Task Force Guideline\u2013Concordant Cervical Cancer Screening Rates and reasons for underscreening by Age, race and ethnicity, sexual orientation, rurality, and insurance, 2005 to 2019. JAMA Netw Open. 2022;5:e2143582. https:\/\/doi.org\/10.1001\/jamanetworkopen.2021.43582.","journal-title":"JAMA Netw Open"},{"key":"2507_CR26","doi-asserted-by":"publisher","first-page":"321","DOI":"10.1016\/S1470-2045(09)70096-8","volume":"10","author":"V Bouvard","year":"2009","unstructured":"Bouvard V, Baan R, Straif K, Grosse Y, Secretan B, Ghissassi FE, Benbrahim-Tallaa L, Guha N, Freeman C, Galichet L, et al. Rev Hum Carcinogens\u2014Part B: Biol Agents Lancet Oncol. 2009;10:321\u20132. https:\/\/doi.org\/10.1016\/S1470-2045(09)70096-8.","journal-title":"Rev Hum Carcinogens\u2014Part B: Biol Agents Lancet Oncol"},{"key":"2507_CR27","doi-asserted-by":"publisher","first-page":"355","DOI":"10.3389\/fonc.2019.00355","volume":"9","author":"T Gheit","year":"2019","unstructured":"Gheit T. Mucosal and cutaneous human papillomavirus infections and Cancer Biology. Front Oncol. 2019;9:355. https:\/\/doi.org\/10.3389\/fonc.2019.00355.","journal-title":"Front Oncol"},{"key":"2507_CR28","doi-asserted-by":"publisher","first-page":"661","DOI":"10.15585\/mmwr.mm6526a1","volume":"65","author":"LJ Viens","year":"2016","unstructured":"Viens LJ, Henley SJ, Watson M, Markowitz LE, Thomas CC, Thompson TD, Razzaghi H, Saraiya M. Human papillomavirus\u2013Associated Cancers \u2014 United States, 2008\u20132012. MMWR Morb Mortal Wkly Rep. 2016;65:661\u20136. https:\/\/doi.org\/10.15585\/mmwr.mm6526a1.","journal-title":"MMWR Morb Mortal Wkly Rep"},{"key":"2507_CR29","doi-asserted-by":"publisher","unstructured":"Den Boon JA, Pyeon D, Wang SS, Horswill M, Schiffman M, Sherman M, Zuna RE, Wang Z, Hewitt SM, Pearson R et al. Molecular Transitions from Papillomavirus Infection to Cervical Precancer and Cancer: Role of Stromal Estrogen Receptor Signaling. Proc. Natl. Acad. Sci. U.S.A. 2015, 112, https:\/\/doi.org\/10.1073\/pnas.1509322112","DOI":"10.1073\/pnas.1509322112"},{"key":"2507_CR30","doi-asserted-by":"publisher","first-page":"884","DOI":"10.2353\/ajpath.2010.091166","volume":"177","author":"Y Zhai","year":"2010","unstructured":"Zhai Y, Bommer GT, Feng Y, Wiese AB, Fearon ER, Cho KR. Loss of Estrogen Receptor 1 enhances cervical Cancer Invasion. Am J Pathol. 2010;177:884\u201395. https:\/\/doi.org\/10.2353\/ajpath.2010.091166.","journal-title":"Am J Pathol"},{"key":"2507_CR31","doi-asserted-by":"publisher","first-page":"506","DOI":"10.3389\/fendo.2020.00506","volume":"11","author":"MT Pagano","year":"2020","unstructured":"Pagano MT, Ortona E, Dupuis ML. A role for estrogen receptor Alpha36 in Cancer Progression. Front Endocrinol. 2020;11:506. https:\/\/doi.org\/10.3389\/fendo.2020.00506.","journal-title":"Front Endocrinol"},{"key":"2507_CR32","doi-asserted-by":"publisher","first-page":"708","DOI":"10.3389\/fendo.2019.00708","volume":"10","author":"P Ranganathan","year":"2019","unstructured":"Ranganathan P, Nadig N, Nambiar S. Non-canonical Estrogen Signaling in Endocrine Resistance. Front Endocrinol. 2019;10:708. https:\/\/doi.org\/10.3389\/fendo.2019.00708.","journal-title":"Front Endocrinol"},{"key":"2507_CR33","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1186\/s13027-019-0231-z","volume":"14","author":"B Li","year":"2019","unstructured":"Li B, Zhang L, Zhao J, Tan G, Zhang W, Zhang N, Tian J, Qu P. The value of cytokine levels in triage and risk prediction for women with Persistent High-Risk Human Papilloma Virus infection of the Cervix. Infect Agents Cancer. 2019;14:16. https:\/\/doi.org\/10.1186\/s13027-019-0231-z.","journal-title":"Infect Agents Cancer"},{"key":"2507_CR34","doi-asserted-by":"publisher","first-page":"452","DOI":"10.1016\/j.ygyno.2004.10.019","volume":"96","author":"HH Nguyen","year":"2005","unstructured":"Nguyen HH, Broker TR, Chow LT, Alvarez RD, Vu HL, Andrasi J, Brewer LR, Jin G, Mestecky J. Immune responses to human papillomavirus in genital tract of women with cervical Cancer. Gynecol Oncol. 2005;96:452\u201361. https:\/\/doi.org\/10.1016\/j.ygyno.2004.10.019.","journal-title":"Gynecol Oncol"},{"key":"2507_CR35","doi-asserted-by":"publisher","first-page":"157","DOI":"10.1016\/j.ygyno.2006.11.023","volume":"105","author":"L Hammes","year":"2007","unstructured":"Hammes L, Tekmal R, Naud P, Edelweiss M, Kirma N, Valente P, Syrjanen K, Cunhafilho J, Macrophages. Inflammation and risk of cervical intraepithelial neoplasia (CIN) progression\u2014clinicopathological correlation. Gynecol Oncol. 2007;105:157\u201365. https:\/\/doi.org\/10.1016\/j.ygyno.2006.11.023.","journal-title":"Gynecol Oncol"},{"key":"2507_CR36","doi-asserted-by":"publisher","first-page":"S296","DOI":"10.1093\/infdis\/jiaa676","volume":"223","author":"LA Lagenaur","year":"2021","unstructured":"Lagenaur LA, Hemmerling A, Chiu C, Miller S, Lee PP, Cohen CR, Parks TP. Connecting the dots: translating the vaginal Microbiome into a drug. J Infect Dis. 2021;223:S296\u2013306. https:\/\/doi.org\/10.1093\/infdis\/jiaa676.","journal-title":"J Infect Dis"},{"key":"2507_CR37","doi-asserted-by":"publisher","first-page":"200","DOI":"10.1126\/science.aak9510","volume":"356","author":"S Stevanovi\u0107","year":"2017","unstructured":"Stevanovi\u0107 S, Pasetto A, Helman SR, Gartner JJ, Prickett TD, Howie B, Robins HS, Robbins PF, Klebanoff CA, Rosenberg SA, et al. Landscape of Immunogenic Tumor Antigens in successful immunotherapy of Virally Induced Epithelial Cancer. Science. 2017;356:200\u20135. https:\/\/doi.org\/10.1126\/science.aak9510.","journal-title":"Science"},{"key":"2507_CR38","doi-asserted-by":"publisher","first-page":"D384","DOI":"10.1093\/nar\/gkac1096","volume":"51","author":"J Wang","year":"2023","unstructured":"Wang J, Chitsaz F, Derbyshire MK, Gonzales NR, Gwadz M, Lu S, Marchler GH, Song JS, Thanki N, Yamashita RA, et al. The conserved domain database in 2023. Nucleic Acids Res. 2023;51:D384\u20138. https:\/\/doi.org\/10.1093\/nar\/gkac1096.","journal-title":"Nucleic Acids Res"},{"key":"2507_CR39","doi-asserted-by":"publisher","first-page":"1166","DOI":"10.1093\/bioinformatics\/bts091","volume":"28","author":"K Okonechnikov","year":"2012","unstructured":"Okonechnikov K, Golosova O, Fursov M. The UGENE team Unipro UGENE: a unified Bioinformatics Toolkit. Bioinformatics. 2012;28:1166\u20137. https:\/\/doi.org\/10.1093\/bioinformatics\/bts091.","journal-title":"Bioinformatics"},{"key":"2507_CR40","doi-asserted-by":"publisher","first-page":"W232","DOI":"10.1093\/nar\/gkw256","volume":"44","author":"J Trifinopoulos","year":"2016","unstructured":"Trifinopoulos J, Nguyen L-T, von Haeseler A, Minh BQ, W-IQ-TREE. A fast online phylogenetic Tool for Maximum Likelihood Analysis. Nucleic Acids Res. 2016;44:W232\u20135. https:\/\/doi.org\/10.1093\/nar\/gkw256.","journal-title":"Nucleic Acids Res"},{"key":"2507_CR41","doi-asserted-by":"publisher","first-page":"1547","DOI":"10.1093\/molbev\/msy096","volume":"35","author":"S Kumar","year":"2018","unstructured":"Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: Molecular Evolutionary Genetics Analysis across Computing platforms. Mol Biol Evol. 2018;35:1547\u20139. https:\/\/doi.org\/10.1093\/molbev\/msy096.","journal-title":"Mol Biol Evol"},{"key":"2507_CR42","doi-asserted-by":"publisher","first-page":"e108277","DOI":"10.1371\/journal.pone.0108277","volume":"9","author":"BM Muhire","year":"2014","unstructured":"Muhire BM, Varsani A, Martin DP, SDT. A virus classification Tool based on pairwise sequence alignment and identity calculation. PLoS ONE. 2014;9:e108277. https:\/\/doi.org\/10.1371\/journal.pone.0108277.","journal-title":"PLoS ONE"},{"key":"2507_CR43","doi-asserted-by":"publisher","unstructured":"Edgar RC, MUSCLE. A multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics. 2004;5. https:\/\/doi.org\/10.1186\/1471-2105-5-113.","DOI":"10.1186\/1471-2105-5-113"},{"key":"2507_CR44","doi-asserted-by":"publisher","first-page":"368","DOI":"10.1007\/BF01734359","volume":"17","author":"J Felsenstein","year":"1981","unstructured":"Felsenstein J. Evolutionary trees from DNA sequences: a Maximum Likelihood Approach. J Mol Evol. 1981;17:368\u201376. https:\/\/doi.org\/10.1007\/BF01734359.","journal-title":"J Mol Evol"},{"key":"2507_CR45","doi-asserted-by":"publisher","first-page":"128","DOI":"10.1016\/j.virusres.2016.11.013","volume":"231","author":"M Tommasino","year":"2017","unstructured":"Tommasino M. The Biology of Beta Human papillomaviruses. Virus Res. 2017;231:128\u201338. https:\/\/doi.org\/10.1016\/j.virusres.2016.11.013.","journal-title":"Virus Res"},{"key":"2507_CR46","doi-asserted-by":"publisher","first-page":"3530","DOI":"10.3390\/v7072785","volume":"7","author":"K Ganti","year":"2015","unstructured":"Ganti K, Broniarczyk J, Manoubi W, Massimi P, Mittal S, Pim D, Szalmas A, Thatte J, Thomas M, Tomai\u0107 V, et al. The human papillomavirus E6 PDZ binding motif: from life cycle to Malignancy. Viruses. 2015;7:3530\u201351. https:\/\/doi.org\/10.3390\/v7072785.","journal-title":"Viruses"},{"key":"2507_CR47","doi-asserted-by":"publisher","first-page":"4705","DOI":"10.1128\/JVI.75.10.4705-4712.2001","volume":"75","author":"M Giarr\u00e8","year":"2001","unstructured":"Giarr\u00e8 M, Caldeira S, Malanchi I, Ciccolini F, Le\u00e3o MJ, Tommasino M. Induction of pRb degradation by the human papillomavirus type 16 E7 protein is essential to efficiently overcome p16INK4a-Imposed G1 cell cycle arrest. J Virol. 2001;75:4705\u201312. https:\/\/doi.org\/10.1128\/JVI.75.10.4705-4712.2001.","journal-title":"J Virol"},{"key":"2507_CR48","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1016\/j.mrrev.2016.07.002","volume":"772","author":"ME Harden","year":"2017","unstructured":"Harden ME, Munger K. Human papillomavirus Molecular Biology. Mutat Research\/Reviews Mutat Res. 2017;772:3\u201312. https:\/\/doi.org\/10.1016\/j.mrrev.2016.07.002.","journal-title":"Mutat Research\/Reviews Mutat Res"},{"key":"2507_CR49","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1016\/j.virol.2013.05.012","volume":"445","author":"K Van Doorslaer","year":"2013","unstructured":"Van Doorslaer K. Evolution of the Papillomaviridae. Virology. 2013;445:11\u201320. https:\/\/doi.org\/10.1016\/j.virol.2013.05.012.","journal-title":"Virology"},{"key":"2507_CR50","doi-asserted-by":"publisher","first-page":"552028","DOI":"10.3389\/fpubh.2020.552028","volume":"8","author":"AJ Kombe Kombe","year":"2021","unstructured":"Kombe Kombe AJ, Li B, Zahid A, Mengist HM, Bounda G-A, Zhou Y, Jin T. Epidemiology and Burden of Human Papillomavirus and Related diseases, Molecular Pathogenesis, and vaccine evaluation. Front Public Health. 2021;8:552028. https:\/\/doi.org\/10.3389\/fpubh.2020.552028.","journal-title":"Front Public Health"},{"key":"2507_CR51","first-page":"5","volume":"81","author":"R Mittal","year":"1993","unstructured":"Mittal R, Tsutsumi K, Pater A, Pater MM. Human papillomavirus type 16 expression in cervical keratinocytes: role of progesterone and glucocorticoid hormones. Gynecol Oncol. 1993;81:5\u201312.","journal-title":"Gynecol Oncol"},{"key":"2507_CR52","doi-asserted-by":"publisher","first-page":"815","DOI":"10.1016\/S0015-0282(99)00012-6","volume":"71","author":"E Strehler","year":"1999","unstructured":"Strehler E, Sterzik K, Malthaner D, Hoyer H, Nindl I, Schneider A. Influence of ovarian stimulation on the detection of human papillomavirus DNA in cervical scrapes obtained from patients undergoing assisted reproductive techniques. Fertil Steril. 1999;71:815\u201320.","journal-title":"Fertil Steril"},{"key":"2507_CR53","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1186\/s12958-023-01091-9","volume":"21","author":"F Zullo","year":"2023","unstructured":"Zullo F, Fiano V, Gilio-Tos A, Leoncini S, Nesi G, Macri L, Preti M, Rolfo A, Benedetto C, Revelli A, De Marco L. Human papillomavirus infection in women undergoing in-vitro fertilization: effects on embryo development kinetics and live birth rate. Reproductive Biology Endocrinol. 2023;21:39\u201346.","journal-title":"Reproductive Biology Endocrinol"},{"key":"2507_CR54","doi-asserted-by":"publisher","unstructured":"Burchell AN, Winer RL, De Sanjos\u00e9 S, Franco EL. Chapter 6: Epidemiology and Transmission Dynamics of Genital HPV Infection. Vaccine 2006, 24, S52\u2013S61, https:\/\/doi.org\/10.1016\/j.vaccine.2006.05.031","DOI":"10.1016\/j.vaccine.2006.05.031"},{"key":"2507_CR55","doi-asserted-by":"publisher","first-page":"405","DOI":"10.1016\/j.ygyno.2014.03.552","volume":"133","author":"EL Dickson","year":"2014","unstructured":"Dickson EL, Vogel RI, Geller MA, Downs LS. Cervical cytology and multiple type HPV infection: a study of 8182 women ages 31\u201365. Gynecol Oncol. 2014;133:405\u20138. https:\/\/doi.org\/10.1016\/j.ygyno.2014.03.552.","journal-title":"Gynecol Oncol"},{"key":"2507_CR56","doi-asserted-by":"publisher","first-page":"642074","DOI":"10.3389\/fcimb.2022.642074","volume":"12","author":"S Liu","year":"2022","unstructured":"Liu S, Li Y, Song Y, Wu X, Baloch Z, Xia X. The diversity of vaginal microbiome in women infected with single HPV and multiple genotype HPV infections in China. Front Cell Infect Microbiol. 2022;12:642074. https:\/\/doi.org\/10.3389\/fcimb.2022.642074.","journal-title":"Front Cell Infect Microbiol"},{"key":"2507_CR57","doi-asserted-by":"publisher","first-page":"566","DOI":"10.1093\/infdis\/jir341","volume":"204","author":"S Hariri","year":"2011","unstructured":"Hariri S, Unger ER, Sternberg M, Dunne EF, Swan D, Patel S, Markowitz LE. Prevalence of Genital Human Papillomavirus among females in the United States, the National Health and Nutrition Examination Survey, 2003\u20132006. J Infect Dis. 2011;204:566\u201373. https:\/\/doi.org\/10.1093\/infdis\/jir341.","journal-title":"J Infect Dis"},{"key":"2507_CR58","doi-asserted-by":"publisher","first-page":"160","DOI":"10.1016\/j.pvr.2017.05.001","volume":"3","author":"TL Meiring","year":"2017","unstructured":"Meiring TL, Mbulawa ZZA, Lesosky M, Coetzee D, Williamson A-L. Alta diversidade de papilomav\u00edrus humanos alfa, beta e gama em amostras genitais de Homens Sul-Africanos Heterossexuais HIV negativos e HIV positivos. Pesquisa Sobre Papilomav\u00edrus. 2017;3:160\u20137. https:\/\/doi.org\/10.1016\/j.pvr.2017.05.001.","journal-title":"Pesquisa Sobre Papilomav\u00edrus"},{"key":"2507_CR59","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1016\/j.virol.2021.03.002","volume":"558","author":"LS Arroyo M\u00fchr","year":"2021","unstructured":"Arroyo M\u00fchr LS, Eklund C, Dillner J. Misclassifications in human papillomavirus databases. Virology. 2021;558:57\u201366. https:\/\/doi.org\/10.1016\/j.virol.2021.03.002.","journal-title":"Virology"},{"key":"2507_CR60","doi-asserted-by":"publisher","first-page":"e00584","DOI":"10.1128\/genomeA.00584-18","volume":"6","author":"AT Murahwa","year":"2018","unstructured":"Murahwa AT, Meiring TL, Mbulawa ZZA, Williamson A-L. Complete genome sequences of four Novel Human Gammapapillomavirus types, HPV-219, HPV-220, HPV-221, and HPV-222, isolated from Penile skin swabs from South African men. Genome Announc. 2018;6:e00584\u201318. https:\/\/doi.org\/10.1128\/genomeA.00584-18.","journal-title":"Genome Announc"},{"key":"2507_CR61","doi-asserted-by":"publisher","first-page":"1815","DOI":"10.1038\/s41591-018-0211-7","volume":"24","author":"O Tirosh","year":"2018","unstructured":"NISC Comparative Sequencing Program, Tirosh O, Conlan S, Deming C, Lee-Lin S-Q, Huang X, Su HC, Freeman AF, Segre JA, Kong HH. Expanded skin virome in DOCK8-Deficient patients. Nat Med. 2018;24:1815\u201321. https:\/\/doi.org\/10.1038\/s41591-018-0211-7.","journal-title":"Nat Med"},{"key":"2507_CR62","doi-asserted-by":"publisher","first-page":"2308","DOI":"10.3390\/v14102308","volume":"14","author":"K Van Doorslaer","year":"2022","unstructured":"Van Doorslaer K. Revisiting Papillomavirus Taxonomy: a proposal for updating the current classification in line with evolutionary evidence. Viruses. 2022;14:2308. https:\/\/doi.org\/10.3390\/v14102308.","journal-title":"Viruses"}],"container-title":["Virology Journal"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12985-024-02507-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1186\/s12985-024-02507-7\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s12985-024-02507-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,9,27]],"date-time":"2024-09-27T21:02:57Z","timestamp":1727470977000},"score":1,"resource":{"primary":{"URL":"https:\/\/virologyj.biomedcentral.com\/articles\/10.1186\/s12985-024-02507-7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,9,27]]},"references-count":62,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2024,12]]}},"alternative-id":["2507"],"URL":"https:\/\/doi.org\/10.1186\/s12985-024-02507-7","relation":{},"ISSN":["1743-422X"],"issn-type":[{"value":"1743-422X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,9,27]]},"assertion":[{"value":"15 July 2024","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"17 September 2024","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"27 September 2024","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"The study was conducted by the 1975 Declaration of Helsinki (, accessed on 9 February 2024). The project was approved by the Institutional Review Board at Weill Cornell Medicine, protocol number 20-04021885, in October 2022.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare no conflicts of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript; or in the decision to publish the results.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Conflict of interest"}},{"value":"The authors declare no competing interests.","order":5,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"229"}}