{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,27]],"date-time":"2026-09-27T10:57:53Z","timestamp":1790506673445,"version":"4.1.0"},"reference-count":42,"publisher":"Springer Science and Business Media LLC","issue":"1","funder":[{"name":"the National Natural Science Foundation of China (CN)","award":["31272695, 31572658"],"award-info":[{"award-number":["31272695, 31572658"]}]},{"name":"the Earmarked Fund for China Agriculture Research System","award":["CARS-46-08"],"award-info":[{"award-number":["CARS-46-08"]}]},{"name":"the major scientific and technological innovation project of Hubei Province","award":["2015ABA045"],"award-info":[{"award-number":["2015ABA045"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Parasites Vectors"],"published-print":{"date-parts":[[2017,12]]},"DOI":"10.1186\/s13071-017-2245-y","type":"journal-article","created":{"date-parts":[[2017,6,27]],"date-time":"2017-06-27T09:43:41Z","timestamp":1498556621000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":37,"title":["The complete mitochondrial DNA of three monozoic tapeworms in the Caryophyllidea: a mitogenomic perspective on the phylogeny of eucestodes"],"prefix":"10.1186","volume":"10","author":[{"given":"Wen X.","family":"Li","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dong","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kellyanne","family":"Boyce","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bing W.","family":"Xi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hong","family":"Zou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shan G.","family":"Wu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ming","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gui T.","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2017,6,27]]},"reference":[{"issue":"6","key":"2245_CR1","doi-asserted-by":"crossref","first-page":"1128","DOI":"10.2307\/3284374","volume":"83","author":"EP Hoberg","year":"1997","unstructured":"Hoberg EP, Mariaux J, Justine JL, Brooks DR, Weekes PJ. Phylogeny of the orders of the Eucestoda (Cercomeromorphae) based on comparative morphology: historical perspectives and a new working hypothesis. J Parasitol. 1997;83(6):1128\u201347.","journal-title":"J Parasitol"},{"key":"2245_CR2","doi-asserted-by":"crossref","unstructured":"Olson PD, Caira JN. Evolution of the major lineages of tapeworms (Platyhelminthes: Cestoidea) inferred from 18S ribosomal DNA and elongation factor-1\u03b1. J Parasitol. 1999;85(6):1134\u201359.","DOI":"10.2307\/3285679"},{"issue":"1","key":"2245_CR3","doi-asserted-by":"crossref","first-page":"311","DOI":"10.1016\/j.ympev.2007.03.019","volume":"45","author":"A Waeschenbach","year":"2007","unstructured":"Waeschenbach A, Webster BL, Bray RA, Littlewood DTJ. Added resolution among ordinal level relationships of tapeworms (Platyhelminthes: Cestoda) with complete small and large subunit nuclear ribosomal RNA genes. Mol Phyogenet Evol. 2007;45(1):311\u201325.","journal-title":"Mol Phyogenet Evol."},{"issue":"3","key":"2245_CR4","doi-asserted-by":"crossref","first-page":"834","DOI":"10.1016\/j.ympev.2012.02.020","volume":"63","author":"A Waeschenbach","year":"2012","unstructured":"Waeschenbach A, Webster BL, Littlewood DTJ. Adding resolution to ordinal level relationships of tapeworms (Platyhelminthes: Cestoda) with large fragments of mtDNA. Mol Phyogenet Evol. 2012;63(3):834\u201347.","journal-title":"Mol Phyogenet Evol."},{"issue":"4","key":"2245_CR5","doi-asserted-by":"crossref","first-page":"729","DOI":"10.1046\/j.1365-294X.2003.02063.x","volume":"13","author":"JWO Ballard","year":"2004","unstructured":"Ballard JWO, Whitlock MC. The incomplete natural history of mitochondria. Mol Ecol. 2004;13(4):729\u201344.","journal-title":"Mol Ecol"},{"issue":"1\u20132","key":"2245_CR6","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1016\/j.gene.2008.03.008","volume":"417","author":"T Huyse","year":"2008","unstructured":"Huyse T, Buchmann K, Littlewood DTJ. The mitochondrial genome of Gyrodactylus derjavinoides (Platyhelminthes: Monogenea) - a mitogenomic approach for Gyrodactylus species and strain identification. Gene. 2008;417(1\u20132):27\u201334.","journal-title":"Gene"},{"issue":"12","key":"2245_CR7","doi-asserted-by":"crossref","first-page":"1401","DOI":"10.1016\/j.ijpara.2007.04.014","volume":"37","author":"MZ Zarowiecki","year":"2007","unstructured":"Zarowiecki MZ, Huyse T, Littlewood DTJ. Making the most of mitochondrial genomes - markers for phylogeny, molecular ecology and barcodes in Schistosoma (Platyhelminthes: Digenea). Int J Parasitol. 2007;37(12):1401\u201318.","journal-title":"Int J Parasitol"},{"issue":"6","key":"2245_CR8","doi-asserted-by":"crossref","first-page":"668","DOI":"10.1016\/S0959-437X(98)80035-X","volume":"8","author":"JL Boore","year":"1998","unstructured":"Boore JL, Brown WM. Big trees from little genomes: mitochondrial gene order as a phylogenetic tool. Curr Opin Genet Dev. 1998;8(6):668\u201374.","journal-title":"Curr Opin Genet Dev"},{"issue":"8","key":"2245_CR9","doi-asserted-by":"crossref","first-page":"439","DOI":"10.1016\/j.tree.2006.05.009","volume":"21","author":"J Boore","year":"2006","unstructured":"Boore J. The use of genome-level characters for phylogenetic reconstruction. Trends Ecol Evol. 2006;21(8):439\u201346.","journal-title":"Trends Ecol Evol"},{"issue":"1","key":"2245_CR10","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1016\/j.ympev.2010.06.020","volume":"57","author":"SE Masta","year":"2010","unstructured":"Masta SE, McCall A, Longhorn SJ. Rare genomic changes and mitochondrial sequences provide independent support for congruent relationships among the sea spiders (Arthropoda, Pycnogonida). Mol Phyogenet Evol. 2010;57(1):59\u201370.","journal-title":"Mol Phyogenet Evol."},{"issue":"5","key":"2245_CR11","doi-asserted-by":"crossref","first-page":"206","DOI":"10.1016\/S1471-4922(02)02252-3","volume":"18","author":"TH Le","year":"2002","unstructured":"Le TH, Blair D, McManus DP. Mitochondrial genomes of parasitic flatworms. Trends Parasitol. 2002;18(5):206\u201313.","journal-title":"Trends Parasitol"},{"issue":"2","key":"2245_CR12","doi-asserted-by":"crossref","first-page":"452","DOI":"10.1016\/j.ympev.2005.12.012","volume":"39","author":"DTJ Littlewood","year":"2006","unstructured":"Littlewood DTJ, Lockyer AE, Webster BL, Johnston DA, Le TH. The complete mitochondrial genomes of Schistosoma haematobium and Schistosoma spindale and the evolutionary history of mitochondrial genome changes among parasitic flatworms. Mol Phyogenet Evol. 2006;39(2):452\u201367.","journal-title":"Mol Phyogenet Evol."},{"key":"2245_CR13","doi-asserted-by":"crossref","unstructured":"Park JK, Kim KH, Kang S, Kim W, Eom KS, Littlewood DTJ. A common origin of complex life cycles in parasitic flatworms: evidence from the complete mitochondrial genome of Microcotyle sebastis (Monogenea: Platyhelminthes). BMC Evol Biol. 2007;7:11.","DOI":"10.1186\/1471-2148-7-11"},{"issue":"1\u20132","key":"2245_CR14","doi-asserted-by":"crossref","first-page":"115","DOI":"10.3354\/dao062115","volume":"62","author":"M Oros","year":"2004","unstructured":"Oros M, Hanzelova V, Scholz T. The cestode Atractolytocestus huronensis (Caryophyllidea) continues to spread in Europe: new data on the helminth parasite of the common carp. Dis Aquat Org. 2004;62(1\u20132):115\u20139.","journal-title":"Dis Aquat Org"},{"issue":"2","key":"2245_CR15","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1016\/j.vetpar.2009.05.010","volume":"164","author":"M Oros","year":"2009","unstructured":"Oros M, Hanzelov\u00e1 V, Scholz T. Tapeworm Khawia sinensis: review of the introduction and subsequent decline of a pathogen of carp, Cyprinus carpio. Vet Parasitol. 2009;164(2):217\u201322.","journal-title":"Vet Parasitol"},{"issue":"1","key":"2245_CR16","doi-asserted-by":"crossref","first-page":"37","DOI":"10.14411\/fp.2010.006","volume":"57","author":"M Oros","year":"2010","unstructured":"Oros M, Scholz T, Hanzelov\u00e1 V, Mackiewicz JS. Scolex morphology of monozoic cestodes (Caryophyllidea) from the Palaearctic region: a useful tool for species identification. Folia Parasitol. 2010;57(1):37\u201346.","journal-title":"Folia Parasitol"},{"issue":"2","key":"2245_CR17","doi-asserted-by":"crossref","first-page":"175","DOI":"10.1016\/j.ijpara.2009.07.002","volume":"40","author":"I Kr\u00e1lov\u00e1-Hromadov\u00e1","year":"2010","unstructured":"Kr\u00e1lov\u00e1-Hromadov\u00e1 I, \u0160tefka J, \u0160pakulov\u00e1 M, Orosov\u00e1 M, Bombarov\u00e1 M, Hanzelov\u00e1 V, et al. Intra-individual internal transcribed spacer 1 (ITS1) and ITS2 ribosomal sequence variation linked with multiple rDNA loci: a case of triploid Atractolytocestus huronensis, the monozoic cestode of common carp. Int J Parasitol. 2010;40(2):175\u201381.","journal-title":"Int J Parasitol"},{"issue":"2","key":"2245_CR18","doi-asserted-by":"crossref","first-page":"133","DOI":"10.2478\/s11686-008-0029-4","volume":"53","author":"D Littlewood","year":"2008","unstructured":"Littlewood D, Waeschenbach A, Nikolov P. In search of mitochondrial markers for resolving the phylogeny of cyclophyllidean tapeworms (Platyhelminthes, Cestoda) - a test study with Davaineidae. Acta Parasitol. 2008;53(2):133\u201344.","journal-title":"Acta Parasitol"},{"issue":"4","key":"2245_CR19","doi-asserted-by":"crossref","first-page":"772","DOI":"10.1093\/molbev\/mst010","volume":"30","author":"K Katoh","year":"2013","unstructured":"Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30(4):772\u201380.","journal-title":"Mol Biol Evol"},{"issue":"3","key":"2245_CR20","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","volume":"215","author":"SF Altschul","year":"1990","unstructured":"Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990;215(3):403\u201310.","journal-title":"J Mol Biol"},{"issue":"5","key":"2245_CR21","doi-asserted-by":"crossref","first-page":"955","DOI":"10.1093\/nar\/25.5.0955","volume":"25","author":"TM Lowe","year":"1997","unstructured":"Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997;25(5):955\u201364.","journal-title":"Nucleic Acids Res"},{"issue":"2","key":"2245_CR22","doi-asserted-by":"crossref","first-page":"172","DOI":"10.1093\/bioinformatics\/btm573","volume":"24","author":"D Laslett","year":"2008","unstructured":"Laslett D, Canback B. ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. Bioinformatics. 2008;24(2):172\u20135.","journal-title":"Bioinformatics"},{"issue":"2","key":"2245_CR23","doi-asserted-by":"crossref","first-page":"313","DOI":"10.1016\/j.ympev.2012.08.023","volume":"69","author":"M Bernt","year":"2013","unstructured":"Bernt M, Donath A, Juhling F, Externbrink F, Florentz C, Fritzsch G, et al. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phyogenet Evol. 2013;69(2):313\u20139.","journal-title":"Mol Phyogenet Evol."},{"issue":"17","key":"2245_CR24","doi-asserted-by":"crossref","first-page":"3252","DOI":"10.1093\/bioinformatics\/bth352","volume":"20","author":"SK Wyman","year":"2004","unstructured":"Wyman SK, Jansen RK, Boore JL. Automatic annotation of organellar genomes with DOGMA. Bioinformatics. 2004;20(17):3252\u20135.","journal-title":"Bioinformatics"},{"key":"2245_CR25","volume-title":"MitoTool software","author":"D Zhang","year":"2016","unstructured":"Zhang D. MitoTool software. 2016. \nhttps:\/\/github.com\/dongzhang0725\/MitoTool\n\n. Accessed 23 Oct 2016."},{"issue":"2","key":"2245_CR26","doi-asserted-by":"crossref","first-page":"573","DOI":"10.1093\/nar\/27.2.573","volume":"27","author":"G Benson","year":"1999","unstructured":"Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999;27(2):573\u201380.","journal-title":"Nucleic Acids Res"},{"issue":"2","key":"2245_CR27","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1093\/bioinformatics\/16.2.135","volume":"16","author":"E Beitz","year":"2000","unstructured":"Beitz E. T(E)Xshade: shading and labeling of multiple sequence alignments using (LTEX)-T-A 2(epsilon). Bioinformatics. 2000;16(2):135\u20139.","journal-title":"Bioinformatics"},{"issue":"13","key":"2245_CR28","doi-asserted-by":"crossref","first-page":"3406","DOI":"10.1093\/nar\/gkg595","volume":"31","author":"M Zuker","year":"2003","unstructured":"Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003;31(13):3406\u201315.","journal-title":"Nucleic Acids Res"},{"issue":"10","key":"2245_CR29","doi-asserted-by":"crossref","first-page":"2731","DOI":"10.1093\/molbev\/msr121","volume":"28","author":"K Tamura","year":"2011","unstructured":"Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28(10):2731\u20139.","journal-title":"Mol Biol Evol"},{"issue":"21","key":"2245_CR30","doi-asserted-by":"crossref","first-page":"2957","DOI":"10.1093\/bioinformatics\/btm468","volume":"23","author":"M Bernt","year":"2007","unstructured":"Bernt M, Merkle D, Ramsch K, Fritzsch G, Perseke M, Bernhard D, et al. CREx: inferring genomic rearrangements based on common intervals. Bioinformatics. 2007;23(21):2957\u20138.","journal-title":"Bioinformatics"},{"key":"2245_CR31","volume-title":"BioSuite software","author":"D Zhang","year":"2016","unstructured":"Zhang D. BioSuite software. 2016. \nhttps:\/\/github.com\/dongzhang0725\/BioSuite\n\n. Accessed 9 Oct 2016."},{"key":"2245_CR32","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1186\/1471-2148-6-29","volume":"6","author":"TM Keane","year":"2006","unstructured":"Keane TM, Creevey CJ, Pentony MM, Naughton TJ, McLnerney JO. Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evol Biol. 2006;6:29.","journal-title":"BMC Evol Biol"},{"issue":"4","key":"2245_CR33","doi-asserted-by":"crossref","first-page":"335","DOI":"10.1007\/s13127-011-0056-0","volume":"12","author":"D Silvestro","year":"2011","unstructured":"Silvestro D, Michalak I. raxmlGUI: a graphical front-end for RAxML. Org Divers Evol. 2011;12(4):335\u20137.","journal-title":"Org Divers Evol"},{"issue":"3","key":"2245_CR34","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1093\/sysbio\/sys029","volume":"61","author":"F Ronquist","year":"2012","unstructured":"Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, H\u00f6hna S, et al. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 2012;61(3):539\u201342.","journal-title":"Syst Biol"},{"issue":"W1","key":"2245_CR35","doi-asserted-by":"crossref","first-page":"W242","DOI":"10.1093\/nar\/gkw290","volume":"44","author":"I Letunic","year":"2016","unstructured":"Letunic I, Bork P. Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees. Nucleic Acids Res. 2016;44(W1):W242\u20135.","journal-title":"Nucleic Acids Res"},{"issue":"9","key":"2245_CR36","doi-asserted-by":"crossref","first-page":"555","DOI":"10.1016\/j.ijpara.2016.03.009","volume":"46","author":"J Brabec","year":"2016","unstructured":"Brabec J, Kuchta R, Scholz T, Littlewood DTJ. Paralogues of nuclear ribosomal genes conceal phylogenetic signals within the invasive Asian fish tapeworm lineage: evidence from next generation sequencing data. Int J Parasitol. 2016;46(9):555\u201362.","journal-title":"Int J Parasitol"},{"key":"2245_CR37","doi-asserted-by":"crossref","unstructured":"Zhao GH, Wang HB, Jia YQ, Zhao W, Hu XF, Yu SK, et al. The complete mitochondrial genome of Pseudanoplocephala crawfordi and a comparison with closely related cestode species. J Helminthol. 2016;90(5):588\u201395.","DOI":"10.1017\/S0022149X15000802"},{"issue":"8","key":"2245_CR38","doi-asserted-by":"crossref","first-page":"533","DOI":"10.1016\/j.ijpara.2014.03.013","volume":"44","author":"Y Terefe","year":"2014","unstructured":"Terefe Y, Hailemariam Z, Menkir S, Nakao M, Lavikainen A, Haukisalmi V, et al. Phylogenetic characterisation of Taenia tapeworms in spotted hyenas and reconsideration of the \u201cout of Africa\u201d hypothesis of Taenia in humans. Int J Parasitol. 2014;44(8):533\u201341.","journal-title":"Int J Parasitol"},{"issue":"3","key":"2245_CR39","doi-asserted-by":"crossref","first-page":"633","DOI":"10.1645\/0022-3395(2003)089[0633:TMGOTT]2.0.CO;2","volume":"89","author":"M Nakao","year":"2003","unstructured":"Nakao M, Sako Y, Ito A. The mitochondrial genome of the tapeworm Taenia solium: a finding of the abbreviated stop codon U. J Parasitol. 2003;89(3):633\u20135.","journal-title":"J Parasitol"},{"issue":"2","key":"2245_CR40","doi-asserted-by":"crossref","first-page":"855","DOI":"10.1016\/j.ympev.2007.11.034","volume":"47","author":"M Perseke","year":"2008","unstructured":"Perseke M, Fritzsch G, Ramsch K, Bernt M, Merkle D, Middendorf M, et al. Evolution of mitochondrial gene orders in echinoderms. Mol Phyogenet Evol. 2008;47(2):855\u201364.","journal-title":"Mol Phyogenet Evol"},{"key":"2245_CR41","doi-asserted-by":"crossref","first-page":"475","DOI":"10.1186\/s13071-016-1769-x","volume":"9","author":"A Guo","year":"2016","unstructured":"Guo A. The complete mitochondrial genome of the tapeworm Cladotaenia vulturi (Cestoda: Paruterinidae): gene arrangement and phylogenetic relationships with other cestodes. Parasit Vectors. 2016;9:475.","journal-title":"Parasit Vectors"},{"issue":"4","key":"2245_CR42","doi-asserted-by":"crossref","first-page":"275","DOI":"10.14411\/fp.2001.046","volume":"48","author":"T Scholz","year":"2001","unstructured":"Scholz T, Shimazu T, Olson PD, Nagasawa K. Caryophyllidean tapeworms (Platyhelminthes: Eucestoda) from freshwater fishes in Japan. Folia Parasitol. 2001;48(4):275\u201388.","journal-title":"Folia Parasitol"}],"container-title":["Parasites &amp; Vectors"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s13071-017-2245-y.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2017,6,27]],"date-time":"2017-06-27T09:44:12Z","timestamp":1498556652000},"score":1,"resource":{"primary":{"URL":"http:\/\/parasitesandvectors.biomedcentral.com\/articles\/10.1186\/s13071-017-2245-y"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2017,6,27]]},"references-count":42,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2017,12]]}},"alternative-id":["2245"],"URL":"https:\/\/doi.org\/10.1186\/s13071-017-2245-y","relation":{},"ISSN":["1756-3305"],"issn-type":[{"value":"1756-3305","type":"electronic"}],"subject":[],"published":{"date-parts":[[2017,6,27]]},"article-number":"314"}}