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Current literature suggests that only one of these blowfly subspecies,\n                      <jats:italic>L. cuprina dorsalis<\/jats:italic>\n                      , is a primary parasite causing myiasis (flystrike) in sheep in Australia. These species and subspecies are difficult to distinguish using morphological features. Hence, being able to accurately identify blowflies is critical for diagnosis and for understanding their relationships with their hosts and environment.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Methods<\/jats:title>\n                    <jats:p>\n                      In this study, adult blowflies (5 pools of 17 flies;\n                      <jats:italic>n<\/jats:italic>\n                      \u2009=\u200985) were collected from five locations in different states [New South Wales (NSW), Queensland (QLD), Tasmania (TAS), Victoria (VIC) and Western Australia (WA)] of Australia and their mitochondrial (mt) genomes were assembled.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>\n                      Each mt genome assembled was\u2009~\u200915\u00a0kb in size and encoded 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs and a control region. The\n                      <jats:italic>Lucilia<\/jats:italic>\n                      species mt genomes were conserved in structure, and the genes retained the same order and direction. The overall nucleotide composition was heavily biased towards As and Ts\u201477.7% of the whole genomes. Pairwise nucleotide diversity suggested divergence between\n                      <jats:italic>Lucilia cuprina cuprina, L. c. dorsalis<\/jats:italic>\n                      and\n                      <jats:italic>L. sericata<\/jats:italic>\n                      . Comparative analyses of these mt genomes with published data demonstrated that the blowflies collected from sheep farm in TAS clustered within a clade with\n                      <jats:italic>L. sericata<\/jats:italic>\n                      . The flies collected from an urban location in QLD were more closely related to\n                      <jats:italic>L. sericata<\/jats:italic>\n                      and represented the subspecies\n                      <jats:italic>L. c. cuprina,<\/jats:italic>\n                      whereas the flies collected from sheep farms in NSW, VIC and WA represented the subspecies\n                      <jats:italic>L. c. dorsalis.<\/jats:italic>\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Conclusions<\/jats:title>\n                    <jats:p>\n                      Phylogenetic analyses of the mt genomes representing\n                      <jats:italic>Lucilia<\/jats:italic>\n                      from the five geographic locations in Australia supported the previously demonstrated paraphyly of\n                      <jats:italic>L. cuprina<\/jats:italic>\n                      with respect to\n                      <jats:italic>L. sericata<\/jats:italic>\n                      and revealed that\n                      <jats:italic>L. c. cuprina<\/jats:italic>\n                      is distinct from\n                      <jats:italic>L. c. dorsalis<\/jats:italic>\n                      and that\n                      <jats:italic>L. c. cuprina<\/jats:italic>\n                      is more closely related to\n                      <jats:italic>L. sericata<\/jats:italic>\n                      than\n                      <jats:italic>L. c. dorsalis<\/jats:italic>\n                      . The mt genomes reported here provide an important molecular resource to develop tools for species- and subspecies-level identification of\n                      <jats:italic>Lucilia<\/jats:italic>\n                      from different geographical regions across Australia.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Graphical Abstract<\/jats:title>\n                  <\/jats:sec>","DOI":"10.1186\/s13071-023-05902-1","type":"journal-article","created":{"date-parts":[[2023,8,12]],"date-time":"2023-08-12T23:14:07Z","timestamp":1691882047000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":15,"title":["Mitochondrial genomic investigation reveals a clear association between species and genotypes of Lucilia and geographic origin in Australia"],"prefix":"10.1186","volume":"16","author":[{"given":"Shilpa","family":"Kapoor","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Neil D.","family":"Young","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ying Ting","family":"Yang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Philip","family":"Batterham","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Robin B.","family":"Gasser","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vernon M.","family":"Bowles","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Clare A.","family":"Anstead","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Trent","family":"Perry","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2023,8,13]]},"reference":[{"key":"5902_CR1","volume-title":"Myiasis in man and animals in the old world. 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