{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,16]],"date-time":"2026-10-16T03:43:25Z","timestamp":1792122205836,"version":"4.4.0"},"reference-count":62,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2018,10,18]],"date-time":"2018-10-18T00:00:00Z","timestamp":1539820800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["41571453"],"award-info":[{"award-number":["41571453"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Microbiome"],"published-print":{"date-parts":[[2018,12]]},"DOI":"10.1186\/s40168-018-0572-7","type":"journal-article","created":{"date-parts":[[2018,10,18]],"date-time":"2018-10-18T19:56:46Z","timestamp":1539892606000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":148,"title":["Consistent responses of soil microbial taxonomic and functional attributes to mercury pollution across China"],"prefix":"10.1186","volume":"6","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-1112-4255","authenticated-orcid":false,"given":"Yu-Rong","family":"Liu","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Manuel","family":"Delgado-Baquerizo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Li","family":"Bi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jun","family":"Zhu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ji-Zheng","family":"He","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2018,10,18]]},"reference":[{"key":"572_CR1","doi-asserted-by":"publisher","first-page":"128","DOI":"10.1111\/ele.12109","volume":"16","author":"A Bissett","year":"2013","unstructured":"Bissett A, Brown MV, Siciliano SD, Thrall PH. Microbial community responses to anthropogenically induced environmental change: towards a systems approach. Ecol Lett. 2013;16:128\u201339.","journal-title":"Ecol Lett"},{"issue":"2","key":"572_CR2","doi-asserted-by":"publisher","first-page":"112","DOI":"10.1111\/j.1574-6976.2012.00343.x","volume":"37","author":"BS Griffiths","year":"2013","unstructured":"Griffiths BS, Philippot L. Insights into the resistance and resilience of the soil microbial community. FEMS Microbiol Rev. 2013;37(2):112\u201329.","journal-title":"FEMS Microbiol Rev"},{"issue":"3","key":"572_CR3","doi-asserted-by":"publisher","first-page":"923","DOI":"10.1111\/mec.13978","volume":"26","author":"S Jiao","year":"2017","unstructured":"Jiao S, Zhang Z, Yang F, Lin Y, Chen W, Wei G. Temporal dynamics of microbial communities in microcosms in response to pollutants. Mol Ecol. 2017;26(3):923\u201336.","journal-title":"Mol Ecol"},{"issue":"10","key":"572_CR4","doi-asserted-by":"publisher","first-page":"3984","DOI":"10.1111\/gcb.13667","volume":"23","author":"JJ Alava","year":"2017","unstructured":"Alava JJ, Cheung WWL, Ross PS, Sumaila UR. Climate change\u2013contaminant interactions in marine food webs: toward a conceptual framework. Glob Chang Biol. 2017;23(10):3984\u20134001.","journal-title":"Glob Chang Biol"},{"issue":"7662","key":"572_CR5","doi-asserted-by":"publisher","first-page":"201","DOI":"10.1038\/nature22997","volume":"547","author":"D Obrist","year":"2017","unstructured":"Obrist D, Agnan Y, Jiskra M, Olson CL, Colegrove DP, Hueber J, Moore CW, Sonke JE, Helmig D. Tundra uptake of atmospheric elemental mercury drives Arctic mercury pollution. Nature. 2017;547(7662):201\u20134.","journal-title":"Nature"},{"issue":"3","key":"572_CR6","doi-asserted-by":"publisher","first-page":"1463","DOI":"10.1002\/2017GL075571","volume":"45","author":"PF Schuster","year":"2018","unstructured":"Schuster PF, Schaefer KM, Aiken GR, Antweiler RC, Dewild JF, Gryziec JD, Gusmeroli A, Hugelius G, Jafarov E, Krabbenhoft DP, et al. Permafrost stores a globally significant amount of mercury. Geophysl Res Lett. 2018;45(3):1463\u201371.","journal-title":"Geophysl Res Lett"},{"issue":"6153","key":"572_CR7","doi-asserted-by":"publisher","first-page":"1457","DOI":"10.1126\/science.1242838","volume":"341","author":"DP Krabbenhoft","year":"2013","unstructured":"Krabbenhoft DP, Sunderland EM. Global change and mercury. Science. 2013;341(6153):1457\u20138.","journal-title":"Science"},{"key":"572_CR8","doi-asserted-by":"publisher","first-page":"451","DOI":"10.1016\/j.ecolind.2016.12.004","volume":"74","author":"KR Mahbub","year":"2017","unstructured":"Mahbub KR, Krishnan K, Naidu R, Andrews S, Megharaj M. Mercury toxicity to terrestrial biota. Ecol Indic. 2017;74:451\u201362.","journal-title":"Ecol Indic"},{"issue":"6","key":"572_CR9","doi-asserted-by":"publisher","first-page":"1237","DOI":"10.1007\/s11356-010-0302-6","volume":"17","author":"Y-R Liu","year":"2010","unstructured":"Liu Y-R, Zheng Y-M, Shen J-P, Zhang L-M, He J-Z. Effects of mercury on the activity and community composition of soil ammonia oxidizers. Environ Sci Pollut Res. 2010;17(6):1237\u201344.","journal-title":"Environ Sci Pollut Res"},{"issue":"1","key":"572_CR10","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1016\/S0168-6496(01)00112-X","volume":"36","author":"AK M\u00fcller","year":"2001","unstructured":"M\u00fcller AK, Westergaard K, Christensen S, S\u00f8rensen SJ. The effect of long-term mercury pollution on the soil microbial community. FEMS Microbiol Ecol. 2001;36(1):11\u20139.","journal-title":"FEMS Microbiol Ecol"},{"issue":"1","key":"572_CR11","doi-asserted-by":"publisher","first-page":"59","DOI":"10.1016\/j.apsoil.2008.08.009","volume":"41","author":"J Harris-Hellal","year":"2009","unstructured":"Harris-Hellal J, Vallaeys T, Garnier-Zarli E, Bousserrhine N. Effects of mercury on soil microbial communities in tropical soils of French Guyana. Appl Soil Ecol. 2009;41(1):59\u201368.","journal-title":"Appl Soil Ecol"},{"issue":"3","key":"572_CR12","doi-asserted-by":"publisher","first-page":"575","DOI":"10.1007\/s00248-014-0430-5","volume":"68","author":"Y-R Liu","year":"2014","unstructured":"Liu Y-R, Wang J-J, Zheng Y-M, Zhang L-M, He J-Z. Patterns of bacterial diversity along a long-term mercury-contaminated gradient in the paddy soils. Microb Ecol. 2014;68(3):575\u201383.","journal-title":"Microb Ecol"},{"key":"572_CR13","doi-asserted-by":"publisher","first-page":"162","DOI":"10.1016\/j.soilbio.2016.11.016","volume":"105","author":"A Frossard","year":"2017","unstructured":"Frossard A, Hartmann M, Frey B. Tolerance of the forest soil microbiome to increasing mercury concentrations. Soil Biol Biochem. 2017;105:162\u201376.","journal-title":"Soil Biol Biochem"},{"key":"572_CR14","doi-asserted-by":"publisher","first-page":"329","DOI":"10.1016\/j.soilbio.2013.06.001","volume":"65","author":"B Frey","year":"2013","unstructured":"Frey B, Rieder SR. Response of forest soil bacterial communities to mercury chloride application. Soil Biol Biochem. 2013;65:329\u201337.","journal-title":"Soil Biol Biochem"},{"issue":"8","key":"572_CR15","doi-asserted-by":"publisher","first-page":"2677","DOI":"10.1111\/1462-2920.12559","volume":"17","author":"AB Menezes","year":"2015","unstructured":"Menezes AB, Prendergast-Miller MT, Richardson AE, Toscas P, Farrell M, Macdonald LM, Baker G, Wark T, Thrall PH. Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters. Environ Microbiol. 2015;17(8):2677\u201389.","journal-title":"Environ Microbiol"},{"issue":"6373","key":"572_CR16","doi-asserted-by":"publisher","first-page":"320","DOI":"10.1126\/science.aap9516","volume":"359","author":"M Delgado-Baquerizo","year":"2018","unstructured":"Delgado-Baquerizo M, Oliverio AM, Brewer TE, Benavent-Gonz\u00e1lez A, Eldridge DJ, Bardgett RD, Maestre FT, Singh BK, Fierer N. A global atlas of the dominant bacteria found in soil. Science. 2018;359(6373):320\u20135.","journal-title":"Science"},{"issue":"3","key":"572_CR17","doi-asserted-by":"publisher","first-page":"583","DOI":"10.1002\/ecy.2137","volume":"99","author":"M Delgado-Baquerizo","year":"2018","unstructured":"Delgado-Baquerizo M, Reith F, Dennis PG, Hamonts K, Powell JR, Young A, Singh BK, Bissett A. Ecological drivers of soil microbial diversity and soil biological networks in the Southern Hemisphere. Ecology. 2018;99(3):583\u201396.","journal-title":"Ecology"},{"issue":"3","key":"572_CR18","doi-asserted-by":"publisher","first-page":"296","DOI":"10.1111\/j.1461-0248.2007.01139.x","volume":"11","author":"MGA Van Der Heijden","year":"2008","unstructured":"Van Der Heijden MGA, Bardgett RD, Van Straalen NM. The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecol Lett. 2008;11(3):296\u2013310.","journal-title":"Ecol Lett"},{"issue":"1","key":"572_CR19","doi-asserted-by":"publisher","first-page":"27","DOI":"10.1186\/s40168-018-0409-4","volume":"6","author":"Y Shi","year":"2018","unstructured":"Shi Y, Li Y, Xiang X, Sun R, Yang T, He D, Zhang K, Ni Y, Zhu Y-G, Adams JM, et al. Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain. Microbiome. 2018;6(1):27.","journal-title":"Microbiome"},{"key":"572_CR20","doi-asserted-by":"publisher","first-page":"191","DOI":"10.1016\/j.soilbio.2018.01.028","volume":"120","author":"A Frossard","year":"2018","unstructured":"Frossard A, Donhauser J, Mestrot A, Gygax S, B\u00e5\u00e5th E, Frey B. Long- and short-term effects of mercury pollution on the soil microbiome. Soil Biol Biochem. 2018;120:191\u20139.","journal-title":"Soil Biol Biochem"},{"issue":"10","key":"572_CR21","doi-asserted-by":"publisher","first-page":"579","DOI":"10.1038\/nrmicro.2017.87","volume":"15","author":"N Fierer","year":"2017","unstructured":"Fierer N. Embracing the unknown: disentangling the complexities of the soil microbiome. Nat Rev Micro. 2017;15(10):579.","journal-title":"Nat Rev Micro"},{"issue":"10","key":"572_CR22","doi-asserted-by":"publisher","first-page":"4318","DOI":"10.1111\/gcb.13783","volume":"23","author":"X Zhang","year":"2017","unstructured":"Zhang X, Johnston ER, Barber\u00e1n A, Ren Y, L\u00fc X, Han X. Decreased plant productivity resulting from plant group removal experiment constrains soil microbial functional diversity. Glob Chang Biol. 2017;23(10):4318\u201332.","journal-title":"Glob Chang Biol"},{"issue":"35","key":"572_CR23","doi-asserted-by":"publisher","first-page":"10967","DOI":"10.1073\/pnas.1508382112","volume":"112","author":"JW Leff","year":"2015","unstructured":"Leff JW, Jones SE, Prober SM, Barber\u00e1n A, Borer ET, Firn JL, Harpole WS, Hobbie SE, Hofmockel KS, Knops JMH, et al. Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe. Proc Natl Acad Sci U S A. 2015;112(35):10967\u201372.","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"4","key":"572_CR24","doi-asserted-by":"publisher","first-page":"885","DOI":"10.1038\/ismej.2016.180","volume":"11","author":"X Zhang","year":"2017","unstructured":"Zhang X, Johnston ER, Li L, Konstantinidis KT, Han X. Experimental warming reveals positive feedbacks to climate change in the Eurasian Steppe. ISME J. 2017;11(4):885\u201395.","journal-title":"ISME J."},{"issue":"2","key":"572_CR25","doi-asserted-by":"publisher","first-page":"116","DOI":"10.1007\/s13280-017-1004-9","volume":"47","author":"D Obrist","year":"2018","unstructured":"Obrist D, Kirk JL, Zhang L, Sunderland EM, Jiskra M, Selin NE. A review of global environmental mercury processes in response to human and natural perturbations: changes of emissions, climate, and land use. Ambio. 2018;47(2):116\u201340.","journal-title":"Ambio"},{"issue":"12","key":"572_CR26","doi-asserted-by":"crossref","first-page":"5409","DOI":"10.1128\/AEM.65.12.5409-5420.1999","volume":"65","author":"\u00c5 Frosteg\u00e5rd","year":"1999","unstructured":"Frosteg\u00e5rd \u00c5, Courtois S, Ramisse V, Clerc S, Bernillon D, Le Gall F, Jeannin P, Nesme X, Simonet P. Quantification of bias related to the extraction of DNA directly from soils. Appl Environ Microbiol. 1999;65(12):5409\u201320.","journal-title":"Appl Environ Microbiol"},{"key":"572_CR27","doi-asserted-by":"publisher","first-page":"16242","DOI":"10.1038\/nmicrobiol.2016.242","volume":"2","author":"P Carini","year":"2017","unstructured":"Carini P, Marsden PJ, Leff JW, Morgan EE, Strickland MS, Fierer N. Relic DNA is abundant in soil and obscures estimates of soil microbial diversity. Nat Microbiol. 2017;2:16242.","journal-title":"Nat Microbiol"},{"issue":"4335","key":"572_CR28","doi-asserted-by":"publisher","first-page":"1302","DOI":"10.1126\/science.199.4335.1302","volume":"199","author":"JH Connell","year":"1978","unstructured":"Connell JH. Diversity in tropical rain forests and coral reefs. Science. 1978;199(4335):1302\u201310.","journal-title":"Science"},{"issue":"1","key":"572_CR29","doi-asserted-by":"publisher","first-page":"326","DOI":"10.1021\/es071948x","volume":"42","author":"X Feng","year":"2008","unstructured":"Feng X, Li P, Qiu G, Wang S, Li G, Shang L, Meng B, Jiang H, Bai W, Li Z, et al. Human exposure to methylmercury through rice intake in mercury mining areas, Guizhou Province, China. Environ Sci Technol. 2008;42(1):326\u201332.","journal-title":"Environ Sci Technol."},{"key":"572_CR30","doi-asserted-by":"publisher","first-page":"74","DOI":"10.1016\/j.jbiotec.2016.03.035","volume":"226","author":"J Lee","year":"2016","unstructured":"Lee J, Jung Y-J, Lee HK, Hong SG, Kim O-S. Complete genome sequence of Pedobacter cryoconitis PAMC 27485, a CRISPR-Cas system-containing psychrophile isolated from Antarctica. J Biotechnol. 2016;226:74\u20135.","journal-title":"J Biotechnol"},{"key":"572_CR31","doi-asserted-by":"publisher","first-page":"3735","DOI":"10.1007\/s00253-015-7219-4","volume":"100","author":"S Wu","year":"2016","unstructured":"Wu S, Li Y, Wang P, Zhong L, Qiu L, Chen J. Shifts of microbial community structure in soils of a photovoltaic plant observed using tag-encoded pyrosequencing of 16S rRNA. Appl Microbiol Biotechnol. 2016;100:3735\u201345.","journal-title":"Appl Microbiol Biotechnol"},{"issue":"7","key":"572_CR32","doi-asserted-by":"publisher","first-page":"635","DOI":"10.1080\/01490451.2012.746407","volume":"30","author":"S Das","year":"2013","unstructured":"Das S, Jean J-S, Kar S, Liu C-C. Changes in bacterial community structure and abundance in agricultural soils under varying levels of arsenic contamination. Geomicrobiol J. 2013;30(7):635\u201344.","journal-title":"Geomicrobiol J"},{"issue":"3","key":"572_CR33","doi-asserted-by":"publisher","first-page":"369","DOI":"10.1016\/S1001-0742(11)60747-X","volume":"24","author":"Z Zhou","year":"2012","unstructured":"Zhou Z, Zheng Y, Shen J, Zhang L, Liu Y, He J. Responses of activities, abundances and community structures of soil denitrifiers to short-term mercury stress. J Environm Sci. 2012;24(3):369\u201375.","journal-title":"J Environm Sci"},{"key":"572_CR34","doi-asserted-by":"publisher","first-page":"355","DOI":"10.1016\/S0168-6445(03)00046-9","volume":"27","author":"T Barkay","year":"2003","unstructured":"Barkay T, Miller SM, Summers AO. FEMS Microbiol Rev. 2003;27:355\u201384.","journal-title":"FEMS Microbiol Rev"},{"issue":"1","key":"572_CR35","doi-asserted-by":"publisher","first-page":"52","DOI":"10.1111\/1574-6941.12189","volume":"87","author":"AK M\u00f8ller","year":"2014","unstructured":"M\u00f8ller AK, Barkay T, Hansen MA, Norman A, Hansen LH, S\u00f8rensen SJ, Boyd ES, Kroer N. Mercuric reductase genes (merA) and mercury resistance plasmids in high Arctic snow, freshwater and sea-ice brine. FEMS Microbiol Ecol. 2014;87(1):52\u201363.","journal-title":"FEMS Microbiol Ecol"},{"key":"572_CR36","doi-asserted-by":"publisher","first-page":"4330","DOI":"10.1111\/gcb.14306","volume":"24","author":"M Delgado-Baquerizo","year":"2018","unstructured":"Delgado-Baquerizo M, Eldridge David J, Travers Samantha K, Val J, Oliver I, Bissett A. Effects of climate legacies on above- and belowground community assembly. Glob Chang Biol. 2018;24:4330\u20139.","journal-title":"Glob Chang Biol"},{"issue":"1","key":"572_CR37","doi-asserted-by":"publisher","first-page":"76","DOI":"10.1007\/s00128-015-1664-8","volume":"96","author":"KR Mahbub","year":"2016","unstructured":"Mahbub KR, Krishnan K, Megharaj M, Naidu R. Mercury inhibits soil enzyme activity in a lower concentration than the guideline value. Bull Environ Contam Toxicol. 2016;96(1):76\u201382.","journal-title":"Bull Environ Contam Toxicol"},{"key":"572_CR38","first-page":"1):1","volume":"57","author":"T Barkay","year":"2005","unstructured":"Barkay T, Wagner-Dobler I. Microbial transformations of mercury: potentials, challenges, and achievements in controlling mercury toxicity in the environment. Adv Appl Microbiol. 2005;57:1):1\u201352.","journal-title":"Adv Appl Microbiol"},{"issue":"2","key":"572_CR39","doi-asserted-by":"publisher","first-page":"151","DOI":"10.1002\/jobm.201600494","volume":"57","author":"JC Lim","year":"2017","unstructured":"Lim JC, Thevarajoo S, Selvaratnam C, Goh KM, Shamsir MS, Ibrahim Z, Chong CS. Global transcriptomic response of Anoxybacillus sp. SK 3-4 to aluminum exposure. J Basic Microbiol. 2017;57(2):151\u201361.","journal-title":"J Basic Microbiol"},{"issue":"6","key":"572_CR40","doi-asserted-by":"publisher","first-page":"2441","DOI":"10.1021\/es304370g","volume":"47","author":"H Hsu-Kim","year":"2013","unstructured":"Hsu-Kim H, Kucharzyk KH, Zhang T, Deshusses MA. Mechanisms regulating mercury bioavailability for methylating microorganisms in the aquatic environment: a critical review. Environ Sci Technol. 2013;47(6):2441\u201356.","journal-title":"Environ Sci Technol."},{"issue":"12","key":"572_CR41","doi-asserted-by":"publisher","first-page":"7432","DOI":"10.1021\/acs.est.5b00676","volume":"49","author":"A Szczuka","year":"2015","unstructured":"Szczuka A, Morel FMM, Schaefer JK. The effect of thiols, zinc, and redox conditions on Hg uptake in Shewanella oneidensis. Environ Sci Technol. 2015;49(12):7432\u20138.","journal-title":"Environ Sci Technol"},{"issue":"21","key":"572_CR42","doi-asserted-by":"publisher","first-page":"8714","DOI":"10.1073\/pnas.1105781108","volume":"108","author":"JK Schaefer","year":"2011","unstructured":"Schaefer JK, Rocks SS, Zheng W, Liang L, Gu B, Morel FMM. Active transport, substrate specificity, and methylation of Hg(II) in anaerobic bacteria. Proc Natl Acad Sci U S A. 2011;108(21):8714\u20139.","journal-title":"Proc Natl Acad Sci U S A"},{"issue":"6125","key":"572_CR43","doi-asserted-by":"publisher","first-page":"1332","DOI":"10.1126\/science.1230667","volume":"339","author":"JM Parks","year":"2013","unstructured":"Parks JM, Johs A, Podar M, Bridou R, Hurt RA, Smith SD, Tomanicek SJ, Qian Y, Brown SD, Brandt CC, et al. The genetic basis for bacterial mercury methylation. Science. 2013;339(6125):1332\u20135.","journal-title":"Science"},{"issue":"11","key":"572_CR44","doi-asserted-by":"crossref","first-page":"4072","DOI":"10.1128\/AEM.60.11.4072-4077.1994","volume":"60","author":"S-C Choi","year":"1994","unstructured":"Choi S-C, Chase T, Bartha R. Metabolic pathways leading to mercury methylation in Desulfovibrio desulfuricans LS. Appl Environ Microbiol. 1994;60(11):4072\u20137.","journal-title":"Appl Environ Microbiol"},{"key":"572_CR45","doi-asserted-by":"publisher","first-page":"179","DOI":"10.1016\/j.envpol.2013.08.030","volume":"184","author":"M Meng","year":"2014","unstructured":"Meng M, Li B, Shao J-J, Wang T, He B, Shi J-J, Ye Z-H, Jiang G-B. Accumulation of total mercury and methylmercury in rice plants collected from different mining areas in China. Environ Pollut. 2014;184:179\u201386.","journal-title":"Environ Pollut"},{"key":"572_CR46","unstructured":"Ministry of Ecology and Environment of the People's Republic of China. Soil environmental quality, risk control standard for soil contamination of agricultural land (GB 15618\u20142018), 2018. (in Chinese)."},{"key":"572_CR47","doi-asserted-by":"publisher","first-page":"10541","DOI":"10.1038\/ncomms10541","volume":"7","author":"M Delgado-Baquerizo","year":"2016","unstructured":"Delgado-Baquerizo M, Maestre FT, Reich PB, Jeffries TC, Gaitan JJ, Encinar D, Berdugo M, Campbell CD, Singh BK. Microbial diversity drives multifunctionality in terrestrial ecosystems. Nat Commun. 2016;7:10541.","journal-title":"Nat Commun"},{"key":"572_CR48","doi-asserted-by":"publisher","first-page":"1342","DOI":"10.1016\/j.envpol.2016.08.093","volume":"218","author":"Y-R Liu","year":"2016","unstructured":"Liu Y-R, Dong J-X, Zhang Q-G, Wang J-T, Han L-L, Zeng J, He J-Z. Longitudinal occurrence of methylmercury in terrestrial ecosystems of the Tibetan Plateau. Environ Pollut. 2016;218:1342\u20139.","journal-title":"Environ Pollut"},{"issue":"1","key":"572_CR49","doi-asserted-by":"publisher","first-page":"29","DOI":"10.1097\/00010694-193401000-00003","volume":"37","author":"A Walkley","year":"1934","unstructured":"Walkley A, Black IA. An examination of the Degtjareff method for determining soil organic matter, and a proposed modification of the chromic acid titration method. Soil Sci. 1934;37(1):29\u201338.","journal-title":"Soil Sci"},{"issue":"5","key":"572_CR50","doi-asserted-by":"publisher","first-page":"991","DOI":"10.1016\/j.soilbio.2005.08.012","volume":"38","author":"DL Jones","year":"2006","unstructured":"Jones DL, Willett VB. Experimental evaluation of methods to quantify dissolved organic nitrogen (DON) and dissolved organic carbon (DOC) in soil. Soil Biol Biochem. 2006;38(5):991\u20139.","journal-title":"Soil Biol Biochem"},{"issue":"24","key":"572_CR51","doi-asserted-by":"publisher","first-page":"8587","DOI":"10.1128\/AEM.02050-12","volume":"78","author":"MA Cregger","year":"2012","unstructured":"Cregger MA, Schadt CW, McDowell NG, Pockman WT, Classen AT. Response of the soil microbial community to changes in precipitation in a semiarid ecosystem. Appl Environ Microbiol. 2012;78(24):8587\u201394.","journal-title":"Appl Environ Microbiol"},{"issue":"D1","key":"572_CR52","doi-asserted-by":"publisher","first-page":"D590","DOI":"10.1093\/nar\/gks1219","volume":"41","author":"C Quast","year":"2013","unstructured":"Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Gl\u00f6ckner FO. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 2013;41(D1):D590\u20136.","journal-title":"Nucleic Acids Res"},{"issue":"21","key":"572_CR53","doi-asserted-by":"publisher","first-page":"2957","DOI":"10.1093\/bioinformatics\/btr507","volume":"27","author":"T Mago\u010d","year":"2011","unstructured":"Mago\u010d T, Salzberg SL. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics. 2011;27(21):2957\u201363.","journal-title":"Bioinformatics"},{"key":"572_CR54","doi-asserted-by":"crossref","unstructured":"Barber\u00e1n A, Casamayor EO, Fierer N. The microbial contribution to macroecology. Front Microbiol. 2014;5:203.","DOI":"10.3389\/fmicb.2014.00203"},{"key":"572_CR55","volume-title":"Gephi: an open source software for exploring and manipulating networks","author":"M Bastian","year":"2009","unstructured":"Bastian M, Heymann S, Jacomy M: Gephi: an open source software for exploring and manipulating networks; 2009."},{"issue":"1","key":"572_CR56","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1023\/A:1010933404324","volume":"45","author":"L Breiman","year":"2001","unstructured":"Breiman L. Random forests. Mach Learn. 2001;45(1):5\u201332.","journal-title":"Mach Learn"},{"key":"572_CR57","doi-asserted-by":"publisher","first-page":"2593","DOI":"10.1038\/ismej.2016.65","volume":"10","author":"P Trivedi","year":"2016","unstructured":"Trivedi P, Delgado-Baquerizo M, Trivedi C, Hu H-W, Anderson I-C, Jeffries T-C, Zhou J, Singh B. Microbial regulation of the soil carbon cycle: evidence from gene-enzyme relationships. ISME J. 2016;10:2593\u2013604.","journal-title":"ISME J"},{"key":"572_CR58","doi-asserted-by":"publisher","first-page":"1087","DOI":"10.1111\/1365-2435.12403","volume":"29","author":"M Delgado-Baquerizo","year":"2015","unstructured":"Delgado-Baquerizo M, Gallardo A, Covelo F, Prado-Comesa\u00f1a A, Ochoa V, Maestre FT. Differences in thallus chemistry are related to species-specific effects of biocrust-forming lichens on soil nutrients and microbial communities. Funct Ecol. 2015;29:1087\u201398.","journal-title":"Funct Ecol"},{"key":"572_CR59","unstructured":"Archer E. rfPermute, Estimate permutation p-values for random forest importance metrics. R package version 1.5.2. 2016."},{"key":"572_CR60","unstructured":"Grace JB. Structural equation modeling and natural systems. Cambridge: Cambridge University Press; 2016."},{"key":"572_CR61","doi-asserted-by":"publisher","first-page":"214","DOI":"10.1126\/science.1215442","volume":"335","author":"FT Maestre","year":"2012","unstructured":"Maestre FT, Quero JL, Gotelli NJ, Escudero A, Ochoa V, Delgado-Baquerizo M, Garc\u00eda-G\u00f3mez M, Bowker MA, Soliveres S, Escolar C. Plant species richness and ecosystem multifunctionality in global drylands. Science. 2012;335:214\u20138.","journal-title":"Science"},{"key":"572_CR62","doi-asserted-by":"publisher","first-page":"8159","DOI":"10.1038\/ncomms9159","volume":"6","author":"X Jing","year":"2015","unstructured":"Jing X, Sanders NJ, Shi Y, Chu H, Classen AT, Zhao K, Chen L, Shi Y, Jiang Y, He J-S. The links between ecosystem multifunctionality and above- and belowground biodiversity are mediated by climate. Nat Commun. 2015;6:8159.","journal-title":"Nat Commun"}],"container-title":["Microbiome"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s40168-018-0572-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/s40168-018-0572-7\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/s40168-018-0572-7.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,11,13]],"date-time":"2020-11-13T12:41:10Z","timestamp":1605271270000},"score":1,"resource":{"primary":{"URL":"https:\/\/microbiomejournal.biomedcentral.com\/articles\/10.1186\/s40168-018-0572-7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,10,18]]},"references-count":62,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2018,12]]}},"alternative-id":["572"],"URL":"https:\/\/doi.org\/10.1186\/s40168-018-0572-7","relation":{},"ISSN":["2049-2618"],"issn-type":[{"value":"2049-2618","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018,10,18]]},"assertion":[{"value":"5 July 2018","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"8 October 2018","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"18 October 2018","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"Not applicable.","order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"Not applicable.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare that they have no competing interests.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}},{"value":"Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Publisher\u2019s Note"}}],"article-number":"183"}}