{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,21]],"date-time":"2026-07-21T04:06:43Z","timestamp":1784606803091,"version":"3.55.0"},"reference-count":86,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2024,8,20]],"date-time":"2024-08-20T00:00:00Z","timestamp":1724112000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"},{"start":{"date-parts":[[2024,8,20]],"date-time":"2024-08-20T00:00:00Z","timestamp":1724112000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"crossref","award":["Grant No. 41907220, 42177220, 41907287, 41977295, 41907220"],"award-info":[{"award-number":["Grant No. 41907220, 42177220, 41907287, 41977295, 41907220"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"crossref","award":["Grant No. 41907220, 42177220, 41907287, 41977295, 41907220"],"award-info":[{"award-number":["Grant No. 41907220, 42177220, 41907287, 41977295, 41907220"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"crossref","award":["Grant No. 41907220, 42177220, 41907287, 41977295, 41907220"],"award-info":[{"award-number":["Grant No. 41907220, 42177220, 41907287, 41977295, 41907220"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"crossref"}]},{"name":"Zhiyuan Science Foundation of BIPT","award":["Grant No.2023004"],"award-info":[{"award-number":["Grant No.2023004"]}]},{"DOI":"10.13039\/501100012166","name":"National Key Research and Development Program of China","doi-asserted-by":"publisher","award":["Grant No. 2019YFC1804400"],"award-info":[{"award-number":["Grant No. 2019YFC1804400"]}],"id":[{"id":"10.13039\/501100012166","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100018527","name":"Key Research Program of Frontier Science, Chinese Academy of Sciences","doi-asserted-by":"publisher","award":["Grant No. ZDBS-LY-DQC038"],"award-info":[{"award-number":["Grant No. ZDBS-LY-DQC038"]}],"id":[{"id":"10.13039\/501100018527","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Natural Science Foundation of Liaoning Province of China","award":["Grant No. 2021-MS-026"],"award-info":[{"award-number":["Grant No. 2021-MS-026"]}]},{"name":"Major Program of Institute of Applied Ecology, Chinese Academy of Sciences","award":["Grant No. IAEMP202201"],"award-info":[{"award-number":["Grant No. IAEMP202201"]}]}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Microbiome"],"abstract":"<jats:title>Abstract<\/jats:title><jats:sec>\n                <jats:title>Background<\/jats:title>\n                <jats:p>Carbon monoxide (CO), hypothetically linked to prebiotic biosynthesis and possibly the origin of the life, emerges as a substantive growth substrate for numerous microorganisms. In anoxic environments, the coupling of CO oxidation with hydrogen (H<jats:sub>2<\/jats:sub>) production is an essential source of electrons, which can subsequently be utilized by hydrogenotrophic bacteria (e.g., organohalide-respring bacteria). While <jats:italic>Dehalococcoides<\/jats:italic> strains assume pivotal roles in the natural turnover of halogenated organics and the bioremediation of chlorinated ethenes, relying on external H<jats:sub>2<\/jats:sub> as their electron donor and acetate as their carbon source, the synergistic dynamics within the anaerobic microbiome have received comparatively less scrutiny. This study delves into the intriguing prospect of CO serving as both the exclusive carbon source and electron donor, thereby supporting the reductive dechlorination of trichloroethene (TCE).<\/jats:p>\n              <\/jats:sec><jats:sec>\n                <jats:title>Results<\/jats:title>\n                <jats:p>The metabolic pathway involved anaerobic CO oxidation, specifically the Wood-Ljungdahl pathway, which produced H<jats:sub>2<\/jats:sub> and acetate as primary metabolic products. In an intricate microbial interplay, these H<jats:sub>2<\/jats:sub> and acetate were subsequently utilized by <jats:italic>Dehalococcoides<\/jats:italic>, facilitating the dechlorination of TCE. Notably, <jats:italic>Acetobacterium<\/jats:italic> emerged as one of the pivotal collaborators for <jats:italic>Dehalococcoides<\/jats:italic>, furnishing not only a crucial carbon source essential for its growth and proliferation but also providing a defense against CO inhibition.<\/jats:p>\n              <\/jats:sec><jats:sec>\n                <jats:title>Conclusions<\/jats:title>\n                <jats:p>This research expands our understanding of CO\u2019s versatility as a microbial energy and carbon source and unveils the intricate syntrophic dynamics underlying reductive dechlorination.<\/jats:p>\n              <\/jats:sec><jats:sec>\n                <jats:title>Graphical Abstract<\/jats:title>\n                \n                \n              <\/jats:sec>","DOI":"10.1186\/s40168-024-01869-y","type":"journal-article","created":{"date-parts":[[2024,8,20]],"date-time":"2024-08-20T02:01:59Z","timestamp":1724119319000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":13,"title":["CO-driven electron and carbon flux fuels synergistic microbial reductive dechlorination"],"prefix":"10.1186","volume":"12","author":[{"ORCID":"https:\/\/orcid.org\/0009-0008-0753-1732","authenticated-orcid":false,"given":"Jingjing","family":"Wang","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3555-7418","authenticated-orcid":false,"given":"Xiuying","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Huijuan","family":"Jin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shujing","family":"Yang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lian","family":"Yu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hongyan","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Siqi","family":"Huang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hengyi","family":"Liao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xuhao","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6883-8529","authenticated-orcid":false,"given":"Jun","family":"Yan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3519-5472","authenticated-orcid":false,"given":"Yi","family":"Yang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2024,8,20]]},"reference":[{"issue":"2","key":"1869_CR1","doi-asserted-by":"publisher","first-page":"117","DOI":"10.1016\/j.resp.2012.04.004","volume":"184","author":"KR Olson","year":"2012","unstructured":"Olson KR, Donald JA, Dombkowski RA, Perry SF. Evolutionary and comparative aspects of nitric oxide, carbon monoxide and hydrogen sulfide. Respir Physiol Neurobiol. 2012;184(2):117\u201329.","journal-title":"Respir Physiol Neurobiol"},{"issue":"2","key":"1869_CR2","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1111\/j.1472-4669.2005.00049.x","volume":"3","author":"P Kharecha","year":"2005","unstructured":"Kharecha P, Kasting J, Siefert J. A coupled atmosphere\u2013ecosystem model of the early Archean Earth. Geobiology. 2005;3(2):53\u201376.","journal-title":"Geobiology"},{"issue":"11","key":"1869_CR3","doi-asserted-by":"publisher","first-page":"805","DOI":"10.1038\/nrmicro1991","volume":"6","author":"W Martin","year":"2008","unstructured":"Martin W, Baross J, Kelley D, Russell MJ. Hydrothermal vents and the origin of life. Nat Rev Microbiol. 2008;6(11):805\u201314.","journal-title":"Nat Rev Microbiol"},{"issue":"5310","key":"1869_CR4","doi-asserted-by":"publisher","first-page":"245","DOI":"10.1126\/science.276.5310.245","volume":"276","author":"C Huber","year":"1997","unstructured":"Huber C, W\u00e4chtersh\u00e4user G. Activated acetic acid by carbon fixation on (Fe, Ni)s under primordial conditions. Science. 1997;276(5310):245\u20137.","journal-title":"Science"},{"issue":"3","key":"1869_CR5","doi-asserted-by":"publisher","first-page":"337","DOI":"10.1016\/j.cbpa.2012.05.002","volume":"16","author":"DC Ducat","year":"2012","unstructured":"Ducat DC, Silver PA. Improving carbon fixation pathways. Curr Opin Chem Biol. 2012;16(3):337\u201344.","journal-title":"Curr Opin Chem Biol"},{"issue":"11","key":"1869_CR6","doi-asserted-by":"publisher","first-page":"1106","DOI":"10.1007\/s11427-016-0304-2","volume":"59","author":"F Gong","year":"2016","unstructured":"Gong F, Cai Z, Li Y. Synthetic biology for CO2 fixation. Sci China Life Sci. 2016;59(11):1106\u201314.","journal-title":"Sci China Life Sci"},{"issue":"3","key":"1869_CR7","doi-asserted-by":"publisher","first-page":"165","DOI":"10.1080\/10409230490496577","volume":"39","author":"SW Ragsdale","year":"2004","unstructured":"Ragsdale SW. Life with carbon monoxide. Crit Rev Biochem. 2004;39(3):165\u201395.","journal-title":"Crit Rev Biochem"},{"key":"1869_CR8","doi-asserted-by":"publisher","first-page":"1275","DOI":"10.3389\/fmicb.2015.01275","volume":"6","author":"M Diender","year":"2015","unstructured":"Diender M, Stams AJM, Sousa DZ. Pathways and bioenergetics of anaerobic carbon monoxide fermentation. Front Microbiol. 2015;6:1275.","journal-title":"Front Microbiol"},{"key":"1869_CR9","doi-asserted-by":"publisher","unstructured":"Cordero PRF, Bayly K, Leung PM, Huang C, Islam ZF, Schittenhelm RB, et al. Carbon monoxide dehydrogenases enhance bacterial survival by respiring atmospheric CO. bioRxiv. 2019:628081.\u00a0https:\/\/doi.org\/10.1101\/628081.","DOI":"10.1101\/628081"},{"issue":"17","key":"1869_CR10","doi-asserted-by":"publisher","first-page":"5949","DOI":"10.1128\/AEM.01772-15","volume":"81","author":"J Bertsch","year":"2015","unstructured":"Bertsch J, M\u00fcller V, Lovell CR. CO metabolism in the acetogen Acetobacterium woodii. Appl Environ Microbiol. 2015;81(17):5949\u201356.","journal-title":"Appl Environ Microbiol"},{"issue":"9","key":"1869_CR11","doi-asserted-by":"publisher","first-page":"3298","DOI":"10.1073\/pnas.73.9.3298","volume":"73","author":"RL Uffen","year":"1976","unstructured":"Uffen RL. Anaerobic growth of a Rhodopseudomonas species in the dark with carbon monoxide as sole carbon and energy substrate. PNAS. 1976;73(9):3298\u2013302.","journal-title":"PNAS"},{"issue":"1","key":"1869_CR12","doi-asserted-by":"publisher","first-page":"12","DOI":"10.3390\/microorganisms9010012","volume":"9","author":"AN DePoy","year":"2020","unstructured":"DePoy AN, King GM, Ohta H. Anaerobic carbon monoxide uptake by microbial communities in volcanic deposits at different stages of successional development on O-yama volcano, Miyake-jima, Japan. Microorganisms. 2020;9(1):12.","journal-title":"Microorganisms"},{"issue":"1616","key":"1869_CR13","doi-asserted-by":"publisher","first-page":"20120322","DOI":"10.1098\/rstb.2012.0322","volume":"368","author":"LA Hug","year":"2013","unstructured":"Hug LA, Maphosa F, Leys D, L\u00f6ffler FE, Smidt H, Edwards EA, et al. Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases. Philos Trans R Soc Lond B Biol Sci. 2013;368(1616):20120322.","journal-title":"Philos Trans R Soc Lond B Biol Sci"},{"issue":"1","key":"1869_CR14","doi-asserted-by":"publisher","first-page":"2230","DOI":"10.1038\/s41598-017-02381-0","volume":"7","author":"M Yohda","year":"2017","unstructured":"Yohda M, Ikegami K, Aita Y, Kitajima M, Takechi A, Iwamoto M, et al. Isolation and genomic characterization of a Dehalococcoides strain suggests genomic rearrangement during culture. Sci Rep. 2017;7(1):2230.","journal-title":"Sci Rep"},{"issue":"6","key":"1869_CR15","doi-asserted-by":"publisher","first-page":"557","DOI":"10.1111\/1758-2229.13192","volume":"15","author":"M Asai","year":"2023","unstructured":"Asai M, Morita Y, Meng L, Miyazaki H, Yoshida N. Dehalococcoides mccartyi strain NIT01 grows more stably in vessels made of pure titanium rather than the stainless alloy SUS304. Environ Microbiol Rep. 2023;15(6):557\u201367.","journal-title":"Environ Microbiol Rep"},{"issue":"4","key":"1869_CR16","doi-asserted-by":"publisher","first-page":"149","DOI":"10.1016\/j.serj.2018.01.006","volume":"28","author":"DM Saiyari","year":"2018","unstructured":"Saiyari DM, Chuang H, Senoro DB, Lin T, Whang L, Chiu Y, et al. A review in the current developments of genus Dehalococcoides, its consortia and kinetics for bioremediation options of contaminated groundwater. Sustain Environ Res. 2018;28(4):149\u201357.","journal-title":"Sustain Environ Res"},{"issue":"6","key":"1869_CR17","doi-asserted-by":"publisher","first-page":"2015","DOI":"10.1099\/ijs.0.000308","volume":"65","author":"FE L\u00f6ffler","year":"2015","unstructured":"L\u00f6ffler FE, Yan J, Ritalahti KM, Adrian L, Edwards EA, Konstantinidis KT, et al. Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi. Int J Syst Evol Microbiol. 2015;65(6):2015\u201315.","journal-title":"Int J Syst Evol Microbiol"},{"issue":"7","key":"1869_CR18","doi-asserted-by":"publisher","first-page":"3108","DOI":"10.1128\/AEM.65.7.3108-3113.1999","volume":"65","author":"X Maym\u00f3-Gatell","year":"1999","unstructured":"Maym\u00f3-Gatell X, Anguish T, Zinder SH. Reductive dechlorination of chlorinated ethenes and 1,2-dichloroethane by \u201cDehalococcoides ethenogenes\u201d 195. Appl Environ Microbiol. 1999;65(7):3108\u201313.","journal-title":"Appl Environ Microbiol"},{"issue":"12","key":"1869_CR19","doi-asserted-by":"publisher","first-page":"5141","DOI":"10.1128\/AEM.66.12.5141-5147.2000","volume":"66","author":"K Magnuson Jon","year":"2000","unstructured":"Magnuson Jon K, Romine Margaret F, Burris David R, Kingsley MT. Trichloroethene reductive dehalogenase from Dehalococcoides ethenogenes: sequence of tceA and substrate range characterization. Appl Environ Microbiol. 2000;66(12):5141\u20137.","journal-title":"Appl Environ Microbiol"},{"issue":"6944","key":"1869_CR20","doi-asserted-by":"publisher","first-page":"62","DOI":"10.1038\/nature01717","volume":"424","author":"J He","year":"2003","unstructured":"He J, Ritalahti KM, Yang K, Koenlgsberg SS, L\u00f6ffler FE. Detoxification of vinyl chloride to ethene coupled to growth of an anaerobic bacterium. Nature. 2003;424(6944):62\u20135.","journal-title":"Nature"},{"issue":"10","key":"1869_CR21","doi-asserted-by":"publisher","first-page":"6347","DOI":"10.1128\/AEM.70.10.6347-6351.2004","volume":"70","author":"R Krajmalnik-Brown","year":"2004","unstructured":"Krajmalnik-Brown R, H\u00f6lscher T, Thomson IN, Saunders FM, Ritalahti KM, L\u00f6ffler FE. Genetic identification of a putative vinyl chloride reductase in Dehalococcoides sp. strain BAV1. Appl Environ Microbiol. 2004;70(10):6347\u201351.","journal-title":"Appl Environ Microbiol"},{"issue":"8","key":"1869_CR22","doi-asserted-by":"publisher","first-page":"2293","DOI":"10.1111\/1462-2920.12099","volume":"15","author":"PKH Lee","year":"2013","unstructured":"Lee PKH, Cheng D, West KA, Alvarez-Cohen L, He J. Isolation of two new Dehalococcoides mccartyi strains with dissimilar dechlorination functions and their characterization by comparative genomics via microarray analysis. Environ Microbiol. 2013;15(8):2293\u2013305.","journal-title":"Environ Microbiol"},{"issue":"10","key":"1869_CR23","doi-asserted-by":"publisher","first-page":"3525","DOI":"10.1021\/ja511653d","volume":"137","author":"A Parthasarathy","year":"2015","unstructured":"Parthasarathy A, Stich TA, Lohner ST, Lesnefsky A, Britt RD, Spormann AM. Biochemical and EPR-spectroscopic investigation into heterologously expressed vinyl chloride reductive dehalogenase (VcrA) from Dehalococcoides mccartyi strain VS. J Am Chem Soc. 2015;137(10):3525\u201332.","journal-title":"J Am Chem Soc"},{"issue":"8","key":"1869_CR24","doi-asserted-by":"publisher","first-page":"4880","DOI":"10.1128\/AEM.70.8.4880-4888.2004","volume":"70","author":"A M\u00fcller Jochen","year":"2004","unstructured":"M\u00fcller Jochen A, Rosner Bettina M, von Abendroth G, Meshulam-Simon G, McCarty Perry L, Spormann Alfred M. Molecular identification of the catabolic vinyl chloride reductase from Dehalococcoides sp. strain VS and its environmental distribution. Appl Environ Microbiol. 2004;70(8):4880\u20138.","journal-title":"Appl Environ Microbiol"},{"issue":"10","key":"1869_CR25","doi-asserted-by":"publisher","first-page":"1269","DOI":"10.1038\/nbt1131","volume":"23","author":"M Kube","year":"2005","unstructured":"Kube M, Beck A, Zinder SH, Kuhl H, Reinhardt R, Adrian L. Genome sequence of the chlorinated compound\u2013respiring bacterium Dehalococcoides species strain CBDB1. Nat Biotechnol. 2005;23(10):1269\u201373.","journal-title":"Nat Biotechnol"},{"issue":"5706","key":"1869_CR26","doi-asserted-by":"publisher","first-page":"105","DOI":"10.1126\/science.1102226","volume":"307","author":"R Seshadri","year":"2005","unstructured":"Seshadri R, Adrian L, Fouts DE, Eisen JA, Phillippy AM, Methe BA, et al. Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes. Science. 2005;307(5706):105\u20138.","journal-title":"Science"},{"issue":"17","key":"1869_CR27","doi-asserted-by":"publisher","first-page":"6419","DOI":"10.1073\/pnas.1321542111","volume":"111","author":"W-Q Zhuang","year":"2014","unstructured":"Zhuang W-Q, Yi S, Bill M, Brisson VL, Feng X, Men Y, et al. Incomplete Wood-Ljungdahl pathway facilitates one-carbon metabolism in organohalide-respiring Dehalococcoides mccartyi. PNAS. 2014;111(17):6419\u201324.","journal-title":"PNAS"},{"issue":"4","key":"1869_CR28","doi-asserted-by":"publisher","first-page":"490","DOI":"10.1016\/j.coph.2009.06.025","volume":"9","author":"BY Chin","year":"2009","unstructured":"Chin BY, Otterbein LE. Carbon monoxide is a poison \u2026 to microbes! CO as a bactericidal molecule. Curr Opin Pharmacol. 2009;9(4):490\u2013500.","journal-title":"Curr Opin Pharmacol"},{"key":"1869_CR29","first-page":"99","volume-title":"Advances in applied microbiology, Volume 110","author":"Y Fukuyama","year":"2020","unstructured":"Fukuyama Y, Inoue M, Omae K, Yoshida T, Sako Y. Chapter three - Anaerobic and hydrogenogenic carbon monoxide-oxidizing prokaryotes: versatile microbial conversion of a toxic gas into an available energy. In: Gadd GM, Sariaslani S, editors. Advances in applied microbiology, Volume 110. New York: Academic Press; 2020. p. 99\u2013148."},{"key":"1869_CR30","doi-asserted-by":"publisher","first-page":"140063","DOI":"10.1016\/j.chemosphere.2023.140063","volume":"342","author":"C Chen","year":"2023","unstructured":"Chen C, Xu G, He J. Substrate-dependent strategies to mitigate sulfate inhibition on microbial reductive dechlorination of polychlorinated biphenyls. Chemosphere. 2023;342:140063.","journal-title":"Chemosphere"},{"issue":"6","key":"1869_CR31","doi-asserted-by":"publisher","first-page":"1286","DOI":"10.1093\/molbev\/msk014","volume":"23","author":"JG Ferry","year":"2006","unstructured":"Ferry JG, House CH. The stepwise evolution of early life driven by energy conservation. Mol Biol Evol. 2006;23(6):1286\u201392.","journal-title":"Mol Biol Evol"},{"key":"1869_CR32","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1146\/annurev.micro.58.030603.123600","volume":"58","author":"H Smidt","year":"2004","unstructured":"Smidt H, de Vos WM. Anaerobic microbial dehalogenation. Annu Rev Microbiol. 2004;58:43\u201373.","journal-title":"Annu Rev Microbiol"},{"issue":"5","key":"1869_CR33","doi-asserted-by":"publisher","first-page":"383","DOI":"10.1007\/BF00252225","volume":"160","author":"M Me\u00dfmer","year":"1993","unstructured":"Me\u00dfmer M, Wohlfarth G, Diekert G. Methyl chloride metabolism of the strictly anaerobic, methyl chloride-utilizing homoacetogen strain MC. Arch Microbiol. 1993;160(5):383\u20137.","journal-title":"Arch Microbiol"},{"issue":"5","key":"1869_CR34","doi-asserted-by":"publisher","first-page":"416","DOI":"10.1007\/BF00248720","volume":"156","author":"J Traunecker","year":"1991","unstructured":"Traunecker J, Preu\u00df A, Diekert G. Isolation and characterization of a methyl chloride utilizing, strictly anaerobic bacterium. Arch Microbiol. 1991;156(5):416\u201321.","journal-title":"Arch Microbiol"},{"issue":"9","key":"1869_CR35","doi-asserted-by":"publisher","first-page":"2230","DOI":"10.1002\/bit.24504","volume":"109","author":"M Ziv-El","year":"2012","unstructured":"Ziv-El M, Popat SC, Parameswaran P, Kang D-W, Polasko A, Halden RU, et al. Using electron balances and molecular techniques to assess trichoroethene-induced shifts to a dechlorinating microbial community. Biotechnol Bioeng. 2012;109(9):2230\u20139.","journal-title":"Biotechnol Bioeng"},{"key":"1869_CR36","doi-asserted-by":"publisher","first-page":"124877","DOI":"10.1016\/j.chemosphere.2019.124877","volume":"240","author":"A Trueba-Santiso","year":"2020","unstructured":"Trueba-Santiso A, Fernandez-Verdejo D, Marco-Rius I, Soder-Walz JM, Casabella O, Vicent T, et al. Interspecies interaction and effect of co-contaminants in an anaerobic dichloromethane-degrading culture. Chemosphere. 2020;240:124877.","journal-title":"Chemosphere"},{"issue":"4","key":"1869_CR37","doi-asserted-by":"publisher","first-page":"1110","DOI":"10.1128\/AEM.02919-12","volume":"79","author":"C Ding","year":"2013","unstructured":"Ding C, Chow Wai L, He J. Isolation of Acetobacterium sp. strain AG, which reductively debrominates octa- and pentabrominated diphenyl ether technical mixtures. Appl Environ Microbiol. 2013;79(4):1110\u20137.","journal-title":"Appl Environ Microbiol"},{"issue":"5","key":"1869_CR38","first-page":"fiy050","volume":"94","author":"ML Lim","year":"2018","unstructured":"Lim ML, Brooks MD, Boothe MA, Krzmarzick MJ. Novel bacterial diversity is enriched with chloroperoxidase-reacted organic matter under anaerobic conditions. FEMS Microbiol Ecol. 2018;94(5):fiy050.","journal-title":"FEMS Microbiol Ecol"},{"issue":"15","key":"1869_CR39","doi-asserted-by":"publisher","first-page":"8579","DOI":"10.1021\/acs.est.7b01510","volume":"51","author":"Y Yang","year":"2017","unstructured":"Yang Y, Capiro NL, Marcet TF, Yan J, Pennell KD, L\u00f6ffler FE. Organohalide respiration with chlorinated ethenes under low pH conditions. Environ Sci Technol. 2017;51(15):8579\u201388.","journal-title":"Environ Sci Technol"},{"issue":"12","key":"1869_CR40","doi-asserted-by":"publisher","first-page":"2767","DOI":"10.1038\/ismej.2017.127","volume":"11","author":"Y Yang","year":"2017","unstructured":"Yang Y, Higgins SA, Yan J, Simsir B, Chourey K, Iyer R, et al. Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes. ISME J. 2017;11(12):2767\u201380.","journal-title":"ISME J"},{"key":"1869_CR41","first-page":"77","volume-title":"Methods in enzymology, Volume 397","author":"FE L\u00f6ffler","year":"2005","unstructured":"L\u00f6ffler FE, Sanford RA, Ritalahti KM. Enrichment, cultivation, and detection of reductively dechlorinating bacteria. In: Methods in enzymology, volume 397. New York: Academic Press; 2005. p. 77\u2013111."},{"issue":"6","key":"1869_CR42","doi-asserted-by":"publisher","first-page":"3430","DOI":"10.1021\/acs.est.1c05952","volume":"56","author":"L Jiang","year":"2022","unstructured":"Jiang L, Yang Y, Jin H, Wang H, Swift CM, Xie Y, et al. Geobacter sp. strain IAE dihaloeliminates 1,1,2-trichloroethane and 1,2-dichloroethane. Environ Sci Technol. 2022;56(6):3430\u201340.","journal-title":"Environ Sci Technol"},{"issue":"3","key":"1869_CR43","doi-asserted-by":"publisher","first-page":"e00757","DOI":"10.1128\/msystems.00757-19","volume":"5","author":"Y Yang","year":"2020","unstructured":"Yang Y, Sanford R, Yan J, Chen G, Capiro NL, Li X, et al. Roles of organohalide-respiring Dehalococcoidia in carbon cycling. mSystems. 2020;5(3):e00757-19.","journal-title":"mSystems"},{"issue":"8","key":"1869_CR44","doi-asserted-by":"publisher","first-page":"2882","DOI":"10.1016\/S0021-9258(18)67912-8","volume":"238","author":"EA Wolin","year":"1963","unstructured":"Wolin EA, Wolin MJ, Wolfe RS. Formation of methane by bacterial extracts. J Biol Chem. 1963;238(8):2882\u20136.","journal-title":"J Biol Chem"},{"key":"1869_CR45","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1007\/978-1-0716-0997-2_3","volume-title":"Molecular plant taxonomy: methods and protocols","author":"R Kalendar","year":"2021","unstructured":"Kalendar R, Boronnikova S, Sepp\u00e4nen M. Isolation and purification of DNA from complicated biological samples. In: Besse P, editor. Molecular plant taxonomy: methods and protocols. New York: Springer, US; 2021. p. 57\u201367."},{"issue":"7","key":"1869_CR46","doi-asserted-by":"publisher","first-page":"566","DOI":"10.1038\/nbt.4163","volume":"36","author":"AP Arkin","year":"2018","unstructured":"Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, et al. KBase: the United States department of energy systems biology knowledgebase. Nat Biotechnol. 2018;36(7):566\u20139.","journal-title":"Nat Biotechnol"},{"key":"1869_CR47","doi-asserted-by":"publisher","first-page":"11257","DOI":"10.1038\/ncomms11257","volume":"7","author":"P Menzel","year":"2016","unstructured":"Menzel P, Ng KL, Krogh A. Fast and sensitive taxonomic classification for metagenomics with Kaiju. Nat Commun. 2016;7:11257.","journal-title":"Nat Commun"},{"issue":"4","key":"1869_CR48","doi-asserted-by":"publisher","first-page":"605","DOI":"10.1093\/bioinformatics\/btv638","volume":"32","author":"YW Wu","year":"2016","unstructured":"Wu YW, Simmons BA, Singer SW. Maxbin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets. Bioinformatics. 2016;32(4):605\u20137.","journal-title":"Bioinformatics"},{"issue":"7","key":"1869_CR49","doi-asserted-by":"publisher","first-page":"1043","DOI":"10.1101\/gr.186072.114","volume":"25","author":"DH Parks","year":"2015","unstructured":"Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res. 2015;25(7):1043\u201355.","journal-title":"Genome Res"},{"issue":"1616","key":"1869_CR50","doi-asserted-by":"publisher","first-page":"20120320","DOI":"10.1098\/rstb.2012.0320","volume":"368","author":"J Yan","year":"2013","unstructured":"Yan J, Im J, Yang Y, L\u00f6ffler FE. Guided cobalamin biosynthesis supports Dehalococcoides mccartyi reductive dechlorination activity. Philos Trans R Soc Lond B Biol Sci. 2013;368(1616):20120320.","journal-title":"Philos Trans R Soc Lond B Biol Sci"},{"issue":"Pt 5","key":"1869_CR51","doi-asserted-by":"publisher","first-page":"2069","DOI":"10.1099\/ijs.0.63299-0","volume":"55","author":"TG Sokolova","year":"2005","unstructured":"Sokolova TG, Kostrikina NA, Chernyh NA, Kolganova TV, Tourova TP, Bonch-Osmolovskaya EA. Thermincola carboxydiphila gen. nov., sp. nov., a novel anaerobic, carboxydotrophic, hydrogenogenic bacterium from a hot spring of the Lake Baikal area. Int J Syst Evol Microbiol. 2005;55(Pt 5):2069\u201373.","journal-title":"Int J Syst Evol Microbiol"},{"issue":"1","key":"1869_CR52","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s00792-006-0004-7","volume":"11","author":"DG Zavarzina","year":"2007","unstructured":"Zavarzina DG, Sokolova TG, Tourova TP, Chernyh NA, Kostrikina NA, Bonch-Osmolovskaya EA. Thermincola ferriacetica sp. nov., a new anaerobic, thermophilic, facultatively chemolithoautotrophic bacterium capable of dissimilatory Fe(III) reduction. Extremophiles. 2007;11(1):1\u20137.","journal-title":"Extremophiles"},{"key":"1869_CR53","doi-asserted-by":"publisher","first-page":"991","DOI":"10.1007\/0-387-30744-3_34","volume-title":"The prokaryotes: volume 4: bacteria: Firmicutes, Cyanobacteria","author":"JA Breznak","year":"2006","unstructured":"Breznak JA. The genus Sporomusa. In: Dworkin M, Falkow S, Rosenberg E, Schleifer K-H, Stackebrandt E, editors. The prokaryotes: volume 4: Bacteria: Firmicutes, Cyanobacteria. New York: Springer, US; 2006. p. 991\u20131001."},{"key":"1869_CR54","doi-asserted-by":"publisher","first-page":"22","DOI":"10.1016\/B978-044452845-2\/50003-3","volume-title":"Biochemical engineering and biotechnology","author":"GD Najafpour","year":"2007","unstructured":"Najafpour GD. Chapter 3 - Gas and liquid system (aeration and agitation). In: Najafpour GD, editor. Biochemical engineering and biotechnology. Amsterdam: Elsevier; 2007. p. 22\u201368."},{"key":"1869_CR55","doi-asserted-by":"publisher","first-page":"58","DOI":"10.3389\/fmicb.2020.00058","volume":"11","author":"AL Arantes","year":"2020","unstructured":"Arantes AL, Moreira JPC, Diender M, Parshina SN, Stams AJM, Alves MM, et al. Enrichment of anaerobic syngas-converting communities and isolation of a novel carboxydotrophic Acetobacterium wieringae strain JM. Front Microbiol. 2020;11:58.","journal-title":"Front Microbiol"},{"issue":"1","key":"1869_CR56","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1099\/ijs.0.64483-0","volume":"57","author":"J Goris","year":"2007","unstructured":"Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM. DNA\u2013DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol. 2007;57(1):81\u201391.","journal-title":"Int J Syst Evol Microbiol"},{"key":"1869_CR57","doi-asserted-by":"publisher","first-page":"1981","DOI":"10.12688\/f1000research.16059.1","volume":"7","author":"F Robb","year":"2018","unstructured":"Robb F, Techtmann S. Life on the fringe: microbial adaptation to growth on carbon monoxide [version 1; peer review: 3 approved]. F1000Res. 2018;7:1981.","journal-title":"F1000Res"},{"issue":"3","key":"1869_CR58","doi-asserted-by":"publisher","first-page":"257","DOI":"10.1007\/s00203-008-0382-6","volume":"190","author":"E Oelgeschl\u00e4ger","year":"2008","unstructured":"Oelgeschl\u00e4ger E, Rother M. Carbon monoxide-dependent energy metabolism in anaerobic bacteria and archaea. Arch Microbiol. 2008;190(3):257\u201369.","journal-title":"Arch Microbiol"},{"key":"1869_CR59","doi-asserted-by":"publisher","unstructured":"Esquivel-Elizondo S, Maldonado J, Krajmalnik-Brown R. Anaerobic carbon monoxide metabolism by Pleomorphomonas carboxyditropha sp nov, a new mesophilic hydrogenogenic carboxydotroph. FEMS Microbiol Ecol. 2018;94(6). https:\/\/doi.org\/10.1093\/femsec\/fiy056.","DOI":"10.1093\/femsec\/fiy056"},{"key":"1869_CR60","doi-asserted-by":"publisher","unstructured":"Esquivel-Elizondo S, Delgado AG, Krajmalnik-Brown R. Evolution of microbial communities growing with carbon monoxide, hydrogen, and carbon dioxide. FEMS Microbiol Ecol. 2017;93(6). https:\/\/doi.org\/10.1093\/femsec\/fix076.","DOI":"10.1093\/femsec\/fix076"},{"issue":"43","key":"1869_CR61","doi-asserted-by":"publisher","first-page":"22492","DOI":"10.1016\/j.ijhydene.2020.06.182","volume":"45","author":"N Akhlaghi","year":"2020","unstructured":"Akhlaghi N, Najafpour-Darzi G. A comprehensive review on biological hydrogen production. Int J Hydrogen Energ. 2020;45(43):22492\u2013512.","journal-title":"Int J Hydrogen Energ"},{"key":"1869_CR62","first-page":"2616","volume-title":"Handbook of chemistry and physics","author":"DR Lide","year":"2004","unstructured":"Lide DR. Handbook of chemistry and physics. 84th ed. Boca Raton: LLC: CRC Press; 2004. p. 2616.","edition":"84"},{"key":"1869_CR63","doi-asserted-by":"publisher","first-page":"1927","DOI":"10.3389\/fmicb.2018.01927","volume":"9","author":"ATT Chau","year":"2018","unstructured":"Chau ATT, Lee M, Adrian L, Manefield MJ. Syntrophic partners enhance growth and respiratory dehalogenation of hexachlorobenzene by Dehalococcoides mccartyi strain CBDB1. Front Microbiol. 2018;9:1927.","journal-title":"Front Microbiol"},{"issue":"12","key":"1869_CR64","doi-asserted-by":"publisher","first-page":"e00443","DOI":"10.1128\/aem.00443-22","volume":"88","author":"G Chen","year":"2022","unstructured":"Chen G, Kara Murdoch F, Xie Y, Murdoch Robert W, Cui Y, Yang Y, et al. Dehalogenation of chlorinated ethenes to ethene by a novel isolate, \u201cCandidatus Dehalogenimonas etheniformans\u201d. Appl Environ Microbiol. 2022;88(12):e00443-e522.","journal-title":"Appl Environ Microbiol"},{"key":"1869_CR65","doi-asserted-by":"publisher","unstructured":"Cui Y, Li X, Yan J, Lv Y, Jin H, Wang J, et al. Dehalogenimonas etheniformans sp. nov., a formate-oxidizing, organohalide-respiring bacterium isolated from grape pomace. Int J Syst Evol Micr. 2023;73(5). https:\/\/doi.org\/10.1099\/ijsem.0.005881.","DOI":"10.1099\/ijsem.0.005881"},{"issue":"29","key":"1869_CR66","doi-asserted-by":"publisher","first-page":"13087","DOI":"10.1073\/pnas.1004716107","volume":"107","author":"M K\u00f6pke","year":"2010","unstructured":"K\u00f6pke M, Held C, Hujer S, Liesegang H, Wiezer A, Wollherr A, et al. Clostridium ljungdahlii represents a microbial production platform based on syngas. PNAS. 2010;107(29):13087\u201392.","journal-title":"PNAS"},{"key":"1869_CR67","doi-asserted-by":"publisher","first-page":"1049","DOI":"10.3389\/fmicb.2016.01049","volume":"7","author":"M Diender","year":"2016","unstructured":"Diender M, Pereira R, Wessels HJ, Stams AJ, Sousa DZ. Proteomic analysis of the hydrogen and carbon monoxide metabolism of Methanothermobacter marburgensis. Front Microbiol. 2016;7:1049.","journal-title":"Front Microbiol"},{"issue":"12","key":"1869_CR68","doi-asserted-by":"publisher","first-page":"1873","DOI":"10.1016\/j.bbapap.2008.08.012","volume":"1784","author":"SW Ragsdale","year":"2008","unstructured":"Ragsdale SW, Pierce E. Acetogenesis and the Wood-Ljungdahl pathway of CO2 fixation. Biochim Biophys Acta Gen Subj. 2008;1784(12):1873\u201398.","journal-title":"Biochim Biophys Acta Gen Subj"},{"issue":"17","key":"1869_CR69","doi-asserted-by":"publisher","first-page":"12237","DOI":"10.1021\/acs.est.2c02574","volume":"56","author":"W Qiao","year":"2022","unstructured":"Qiao W, Liu G, Li M, Su X, Lu L, Ye S, et al. Complete reductive dechlorination of 4-hydroxy-chlorothalonil by Dehalogenimonas populations. Environ Sci Technol. 2022;56(17):12237\u201346.","journal-title":"Environ Sci Technol"},{"issue":"17","key":"1869_CR70","doi-asserted-by":"publisher","first-page":"4193","DOI":"10.1016\/S0043-1354(02)00151-3","volume":"36","author":"M Duhamel","year":"2002","unstructured":"Duhamel M, Wehr SD, Yu L, Rizvi H, Seepersad D, Dworatzek S, et al. Comparison of anaerobic dechlorinating enrichment cultures maintained on tetrachloroethene, trichloroethene, cis-dichloroethene and vinyl chloride. Water Res. 2002;36(17):4193\u2013202.","journal-title":"Water Res"},{"issue":"3","key":"1869_CR71","doi-asserted-by":"publisher","first-page":"538","DOI":"10.1111\/j.1574-6941.2006.00191.x","volume":"58","author":"M Duhamel","year":"2006","unstructured":"Duhamel M, Edwards EA. Microbial composition of chlorinated ethene-degrading cultures dominated by Dehalococcoides. FEMS Microbiol Ecol. 2006;58(3):538\u201349.","journal-title":"FEMS Microbiol Ecol"},{"issue":"9","key":"1869_CR72","doi-asserted-by":"publisher","first-page":"2123","DOI":"10.1038\/s41396-022-01257-0","volume":"16","author":"S Zhao","year":"2022","unstructured":"Zhao S, Ding C, Xu G, Rogers MJ, Ramaswamy R, He J. Diversity of organohalide respiring bacteria and reductive dehalogenases that detoxify polybrominated diphenyl ethers in E-waste recycling sites. ISME J. 2022;16(9):2123\u201331.","journal-title":"ISME J"},{"issue":"13","key":"1869_CR73","doi-asserted-by":"publisher","first-page":"1355","DOI":"10.1016\/j.ijhydene.2003.09.011","volume":"29","author":"H-S Shin","year":"2004","unstructured":"Shin H-S, Youn J-H, Kim S-H. Hydrogen production from food waste in anaerobic mesophilic and thermophilic acidogenesis. Int J Hydrogen Energ. 2004;29(13):1355\u201363.","journal-title":"Int J Hydrogen Energ"},{"issue":"10","key":"1869_CR74","doi-asserted-by":"publisher","first-page":"1745","DOI":"10.1016\/S0016-7037(98)00106-9","volume":"62","author":"TM Hoehler","year":"1998","unstructured":"Hoehler TM, Alperin MJ, Albert DB, Martens CS. Thermodynamic control on hydrogen concentrations in anoxic sediments. Geochim Cosmochim Acta. 1998;62(10):1745\u201356.","journal-title":"Geochim Cosmochim Acta"},{"issue":"C10","key":"1869_CR75","doi-asserted-by":"publisher","first-page":"5493","DOI":"10.1029\/JC085iC10p05493","volume":"85","author":"R Conrad","year":"1980","unstructured":"Conrad R, Seiler W. Contribution of hydrogen production by biological nitrogen fixation to the global hydrogen budget. J Geophys Res Oceans. 1980;85(C10):5493\u20138.","journal-title":"J Geophys Res Oceans"},{"issue":"1","key":"1869_CR76","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1007\/s10533-020-00666-7","volume":"149","author":"JP Bellenger","year":"2020","unstructured":"Bellenger JP, Darnajoux R, Zhang X, Kraepiel AML. Biological nitrogen fixation by alternative nitrogenases in terrestrial ecosystems: a review. Biogeochemistry. 2020;149(1):53\u201373.","journal-title":"Biogeochemistry"},{"issue":"4","key":"1869_CR77","doi-asserted-by":"publisher","first-page":"285","DOI":"10.1023\/A:1024765706617","volume":"14","author":"CS Mazur","year":"2003","unstructured":"Mazur CS, Jones WJ, Tebes-Stevens C. H2 consumption during the microbial reductive dehalogenation of chlorinated phenols and tetrachloroethene. Biodegradation. 2003;14(4):285\u201395.","journal-title":"Biodegradation"},{"issue":"6","key":"1869_CR78","doi-asserted-by":"publisher","first-page":"646","DOI":"10.1111\/j.1462-2920.2004.00608.x","volume":"6","author":"ML Luijten","year":"2004","unstructured":"Luijten ML, Roelofsen W, Langenhoff AA, Schraa G, Stams AJ. Hydrogen threshold concentrations in pure cultures of halorespiring bacteria and at a site polluted with chlorinated ethenes. Environ Microbiol. 2004;6(6):646\u201350.","journal-title":"Environ Microbiol"},{"issue":"9","key":"1869_CR79","doi-asserted-by":"publisher","first-page":"1725","DOI":"10.1081\/ESE-100106254","volume":"36","author":"XX Lu","year":"2001","unstructured":"Lu XX, Tao S, Bosma T, Gerritse J. Characteristic hydrogen concentrations for various redox processes in batch study. J Environ Sci Health A Tox Hazard Subst Environ Eng. 2001;36(9):1725\u201334.","journal-title":"J Environ Sci Health A Tox Hazard Subst Environ Eng"},{"issue":"3","key":"1869_CR80","doi-asserted-by":"publisher","first-page":"1635","DOI":"10.1021\/acs.est.6b05050","volume":"51","author":"K Mayer-Blackwell","year":"2017","unstructured":"Mayer-Blackwell K, Azizian MF, Green JK, Spormann AM, Semprini L. Survival of vinyl chloride respiring Dehalococcoides mccartyi under long-term electron donor limitation. Environ Sci Technol. 2017;51(3):1635\u201342.","journal-title":"Environ Sci Technol"},{"issue":"1","key":"1869_CR81","doi-asserted-by":"publisher","first-page":"e01183","DOI":"10.1128\/genomea.01183-13","volume":"2","author":"CB Wawrik","year":"2014","unstructured":"Wawrik CB, Callaghan AV, Stamps BW, Wawrik B. Genome sequence of Youngiibacter fragilis, the type strain of the genus Youngiibacter. Genome Announc. 2014;2(1):e01183-13. https:\/\/doi.org\/10.1128\/genomea.01183-13.","journal-title":"Genome Announc"},{"key":"1869_CR82","doi-asserted-by":"crossref","unstructured":"Galushko A, Kuever J. Desulfocurvibacter. In; Bergey\u2019s manual of systematics of archaea and bacteria. 2020. p. 1\u20136.","DOI":"10.1002\/9781118960608.gbm01881"},{"issue":"2","key":"1869_CR83","doi-asserted-by":"publisher","first-page":"951","DOI":"10.1099\/ijsem.0.003854","volume":"70","author":"K Wu","year":"2020","unstructured":"Wu K, Dai L, Tu B, Zhang X, Zhang H, Deng Y, et al. Gudongella oleilytica gen. nov., sp. nov., an aerotorelant bacterium isolated from Shengli oilfield and validation of family Tissierellaceae. Int J Syst Evol Microbiol. 2020;70(2):951\u20137.","journal-title":"Int J Syst Evol Microbiol"},{"issue":"4","key":"1869_CR84","doi-asserted-by":"publisher","first-page":"800","DOI":"10.1099\/ijs.0.003731-0","volume":"59","author":"H Imachi","year":"2009","unstructured":"Imachi H, Sakai S, Nagai H, Yamaguchi T, Takai K. Methanofollis ethanolicus sp. nov., an ethanol-utilizing methanogen isolated from a lotus field. Int J Syst Evol Microbiol. 2009;59(4):800\u20135.","journal-title":"Int J Syst Evol Microbiol"},{"issue":"Pt_10","key":"1869_CR85","doi-asserted-by":"publisher","first-page":"3679","DOI":"10.1099\/ijs.0.052225-0","volume":"63","author":"T Honda","year":"2013","unstructured":"Honda T, Fujita T, Tonouchi A. Aminivibrio pyruvatiphilus gen. nov., sp. nov., an anaerobic, amino-acid-degrading bacterium from soil of a Japanese rice field. Int J Syst Evol Microbiol. 2013;63(Pt_10):3679\u201386.","journal-title":"Int J Syst Evol Microbiol"},{"issue":"3","key":"1869_CR86","doi-asserted-by":"publisher","first-page":"1113","DOI":"10.1099\/ijs.0.63426-0","volume":"55","author":"A Grabowski","year":"2005","unstructured":"Grabowski A, Tindall BJ, Bardin V, Blanchet D, Jeanthon C. Petrimonas sulfuriphila gen. nov., sp. nov., a mesophilic fermentative bacterium isolated from a biodegraded oil reservoir. Int J Syst Evol Microbiol. 2005;55(3):1113\u201321.","journal-title":"Int J Syst Evol Microbiol"}],"container-title":["Microbiome"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s40168-024-01869-y.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/article\/10.1186\/s40168-024-01869-y\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s40168-024-01869-y.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,2,13]],"date-time":"2025-02-13T12:14:13Z","timestamp":1739448853000},"score":1,"resource":{"primary":{"URL":"https:\/\/microbiomejournal.biomedcentral.com\/articles\/10.1186\/s40168-024-01869-y"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,8,20]]},"references-count":86,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2024,12]]}},"alternative-id":["1869"],"URL":"https:\/\/doi.org\/10.1186\/s40168-024-01869-y","relation":{},"ISSN":["2049-2618"],"issn-type":[{"value":"2049-2618","type":"electronic"}],"subject":[],"published":{"date-parts":[[2024,8,20]]},"assertion":[{"value":"21 January 2024","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"7 July 2024","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"20 August 2024","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"Not applicable.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare no competing interests.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"154"}}