{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,5]],"date-time":"2026-10-05T20:13:25Z","timestamp":1791231205048,"version":"4.1.0"},"reference-count":68,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2026,5,29]],"date-time":"2026-05-29T00:00:00Z","timestamp":1780012800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"},{"start":{"date-parts":[[2026,6,5]],"date-time":"2026-06-05T00:00:00Z","timestamp":1780617600000},"content-version":"vor","delay-in-days":7,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["Microbiome"],"DOI":"10.1186\/s40168-026-02439-0","type":"journal-article","created":{"date-parts":[[2026,5,29]],"date-time":"2026-05-29T06:32:50Z","timestamp":1780036370000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Biosynthesized selenium nanoparticles increase soybean resistance to root rot by recruiting beneficial microbes and reprogramming host metabolism"],"prefix":"10.1186","volume":"14","author":[{"given":"Haixu","family":"Liu","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Songhan","family":"Han","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ke","family":"Shi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yan","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ying","family":"Xu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shuang","family":"Song","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yufei","family":"Chen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,5,29]]},"reference":[{"key":"2439_CR1","doi-asserted-by":"publisher","DOI":"10.1016\/j.pestbp.2024.105828","volume":"200","author":"C Zhang","year":"2024","unstructured":"Zhang C, Liu Z, Yang Y, Ma Q, Zheng Y, Xu C, et al. Characterization of Fusarium species causing soybean root rot in Heilongjiang, China, and mechanism underlying the differences in sensitivity to DMI fungicides. Pestic Biochem Physiol. 2024;200:105828. https:\/\/doi.org\/10.1016\/j.pestbp.2024.105828.","journal-title":"Pestic Biochem Physiol"},{"key":"2439_CR2","doi-asserted-by":"publisher","DOI":"10.1094\/pdis-05-20-0941-pdn","volume":"105","author":"S Wang","year":"2021","unstructured":"Wang S, Li X, Liu C, Liu L, Yang F, Guo Y, et al. First report of Fusarium brachygibbosum causing root rot on soybean in northeastern China. Plant Dis. 2021;105:1560. https:\/\/doi.org\/10.1094\/pdis-05-20-0941-pdn.","journal-title":"Plant Dis"},{"key":"2439_CR3","doi-asserted-by":"publisher","first-page":"575","DOI":"10.5423\/ppj.Oa.06.2023.0086","volume":"39","author":"Y Liu","year":"2023","unstructured":"Liu Y, Wei X, Chang F, Yu N, Guo C, Cai H. Distribution and pathogenicity of Fusarium species associated with soybean root rot in northeast China. Plant Pathol J. 2023;39:575\u201383. https:\/\/doi.org\/10.5423\/ppj.Oa.06.2023.0086.","journal-title":"Plant Pathol J"},{"key":"2439_CR4","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0231141","volume":"15","author":"AY Bandara","year":"2020","unstructured":"Bandara AY, Weerasooriya DK, Bradley CA, Allen TW, Esker PD. Dissecting the economic impact of soybean diseases in the United States over two decades. PLoS One. 2020;15:e0231141. https:\/\/doi.org\/10.1371\/journal.pone.0231141.","journal-title":"PLoS One"},{"key":"2439_CR5","doi-asserted-by":"publisher","first-page":"1690","DOI":"10.1094\/pdis-08-22-1998-sr","volume":"107","author":"L Yi","year":"2023","unstructured":"Yi L, Yang M, Waalwijk C, Xu J, Xu J, Moln\u00e1r O, et al. Dynamics of carbendazim-resistance frequency of pathogens associated with the epidemic of Fusarium head blight. Plant Dis. 2023;107:1690\u20136. https:\/\/doi.org\/10.1094\/pdis-08-22-1998-sr.","journal-title":"Plant Dis"},{"key":"2439_CR6","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2021.654512","volume":"12","author":"MS Ayesha","year":"2021","unstructured":"Ayesha MS, Suryanarayanan TS, Nataraja KN, Prasad SR, Shaanker RU. Seed treatment with systemic fungicides: time for review. Front Plant Sci. 2021;12:654512. https:\/\/doi.org\/10.3389\/fpls.2021.654512.","journal-title":"Front Plant Sci"},{"key":"2439_CR7","doi-asserted-by":"publisher","first-page":"3347","DOI":"10.1021\/acs.est.8b04392","volume":"53","author":"JP Zubrod","year":"2019","unstructured":"Zubrod JP, Bundschuh M, Arts G, Br\u00fchl CA, Imfeld G, Kn\u00e4bel A, et al. Fungicides: an overlooked pesticide class? Environ Sci Technol. 2019;53:3347\u201365. https:\/\/doi.org\/10.1021\/acs.est.8b04392.","journal-title":"Environ Sci Technol"},{"key":"2439_CR8","doi-asserted-by":"publisher","DOI":"10.1016\/j.scienta.2020.109290","volume":"266","author":"M Rady","year":"2020","unstructured":"Rady M, Belal H, Gadallah F, Semida W. Selenium application in two methods promotes drought tolerance in Solanum lycopersicum plant by inducing the antioxidant defense system. Sci Hortic. 2020;266:118. https:\/\/doi.org\/10.1016\/j.scienta.2020.109290.","journal-title":"Sci Hortic"},{"key":"2439_CR9","doi-asserted-by":"publisher","first-page":"180","DOI":"10.1016\/j.envexpbot.2018.11.009","volume":"161","author":"N Handa","year":"2018","unstructured":"Handa N, Kohli S, Sharma A, Thukral A, Bhardwaj R, Abd Allah EF, et al. Selenium modulates dynamics of antioxidative defence expression, photosynthetic attributes and secondary metabolites to mitigate chromium toxicity in Brassica juncea L. plants. Environ Exp Bot. 2018;161:180\u201392. https:\/\/doi.org\/10.1016\/j.envexpbot.2018.11.009.","journal-title":"Environ Exp Bot"},{"key":"2439_CR10","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1080\/07060661.2021.1954093","volume":"44","author":"A Somalraju","year":"2021","unstructured":"Somalraju A, McCallum J, Main D, Peters R, Fofana B. Foliar selenium application reduces late blight severity and incidence in potato and acts as a pathogen growth inhibitor and elicitor of induced plant defence. Can J Plant Pathol. 2021;44:39\u201355. https:\/\/doi.org\/10.1080\/07060661.2021.1954093.","journal-title":"Can J Plant Pathol"},{"key":"2439_CR11","doi-asserted-by":"publisher","first-page":"294","DOI":"10.1016\/j.envint.2017.12.035","volume":"112","author":"T Dinh","year":"2018","unstructured":"Dinh T, Cui Z, Huang J, Thu T, Wang D, Yang W, et al. Selenium distribution in the Chinese environment and its relationship with human health: a review. Environ Int. 2018;112:294\u2013309. https:\/\/doi.org\/10.1016\/j.envint.2017.12.035.","journal-title":"Environ Int"},{"key":"2439_CR12","doi-asserted-by":"publisher","first-page":"1347","DOI":"10.1590\/s0100-06832011000400029","volume":"35","author":"SJ Ramos","year":"2011","unstructured":"Ramos SJ, Faquin V, Almeida HJd, \u00c1vila FW, Guilherme LRG, Bastos CEA, et al. Selenate and selenite on yield, mineral nutrition and biofortification with selenium in lettuce cultivars. Rev Bras Cienc Solo. 2011;35:1347\u201355. https:\/\/doi.org\/10.1590\/s0100-06832011000400029.","journal-title":"Rev Bras Cienc Solo"},{"key":"2439_CR13","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2021.746046","volume":"12","author":"J Liu","year":"2021","unstructured":"Liu J, Qi W-Y, Chen H, Song C, Li Q, Wang S-G. Selenium nanoparticles as an innovative selenium fertilizer exert less disturbance to soil microorganisms. Front Microbiol. 2021;12:746046. https:\/\/doi.org\/10.3389\/fmicb.2021.746046.","journal-title":"Front Microbiol"},{"key":"2439_CR14","doi-asserted-by":"publisher","DOI":"10.1186\/s12951-020-00659-6","volume":"18","author":"K Wang","year":"2020","unstructured":"Wang K, Wang Y, Li K, Wan Y, Wang Q, Zhuang Z, et al. Uptake, translocation and biotransformation of selenium nanoparticles in rice seedlings (Oryza sativa L.). J Nanobiotechnol. 2020;18:103. https:\/\/doi.org\/10.1186\/s12951-020-00659-6.","journal-title":"J Nanobiotechnol"},{"key":"2439_CR15","doi-asserted-by":"publisher","DOI":"10.3389\/fnut.2023.1183487","volume":"10","author":"T Zhang","year":"2023","unstructured":"Zhang T, Qi M, Wu Q, Xiang P, Tang D, Li Q. Recent research progress on the synthesis and biological effects of selenium nanoparticles. Front Nutr. 2023;10:1183487. https:\/\/doi.org\/10.3389\/fnut.2023.1183487.","journal-title":"Front Nutr"},{"key":"2439_CR16","doi-asserted-by":"publisher","DOI":"10.1186\/s12866-024-03410-5","volume":"24","author":"Z Wang","year":"2024","unstructured":"Wang Z, Li N, Zhou X, Wei S, Zhu Y, Li M, et al. Optimization of fermentation parameters to improve the biosynthesis of selenium nanoparticles by Bacillus licheniformis F1 and its comprehensive application. BMC Microbiol. 2024;24:271. https:\/\/doi.org\/10.1186\/s12866-024-03410-5.","journal-title":"BMC Microbiol"},{"key":"2439_CR17","doi-asserted-by":"publisher","DOI":"10.1016\/j.jare.2025.05.057","author":"Q Dong","year":"2025","unstructured":"Dong Q, Huang T, Zhou C, Wan X, He X, Miao P, et al. Nano-priming with selenium nanoparticles reprograms seed germination, antioxidant defense, and phenylpropanoid metabolism to enhance Fusarium graminearum resistance in maize seedlings. J Adv Res. 2025. https:\/\/doi.org\/10.1016\/j.jare.2025.05.057.","journal-title":"J Adv Res"},{"key":"2439_CR18","doi-asserted-by":"publisher","first-page":"5030","DOI":"10.1021\/acs.jafc.2c08017","volume":"71","author":"Z Wang","year":"2023","unstructured":"Wang Z, Hu X, Solanki MK, Pang F. A synthetic microbial community of plant core microbiome can be a potential biocontrol tool. J Agric Food Chem. 2023;71:5030\u201341. https:\/\/doi.org\/10.1021\/acs.jafc.2c08017.","journal-title":"J Agric Food Chem"},{"key":"2439_CR19","doi-asserted-by":"publisher","DOI":"10.1016\/j.envpol.2019.113051","volume":"254","author":"K Liu","year":"2019","unstructured":"Liu K, Cai M, Hu C, Sun X, Cheng Q, Jia W, et al. Selenium (Se) reduces Sclerotinia stem rot disease incidence of oilseed rape by increasing plant Se concentration and shifting soil microbial community and functional profiles. Environ Pollut. 2019;254:113051. https:\/\/doi.org\/10.1016\/j.envpol.2019.113051.","journal-title":"Environ Pollut"},{"key":"2439_CR20","doi-asserted-by":"publisher","DOI":"10.1016\/j.jclepro.2022.134960","volume":"380","author":"Z Lei","year":"2022","unstructured":"Lei Z, Li Q, Tang Y, Zhang H, Han C, Wang X, et al. Selenium enhanced nitrogen accumulation in legumes in soil with rhizobia bacteria. J Clean Prod. 2022;380:134960. https:\/\/doi.org\/10.1016\/j.jclepro.2022.134960.","journal-title":"J Clean Prod"},{"key":"2439_CR21","doi-asserted-by":"publisher","first-page":"471","DOI":"10.1007\/s13213-012-0491-y","volume":"63","author":"CDC Barillot","year":"2013","unstructured":"Barillot CDC, Sarde C-O, Bert V, Tarnaud E, Cochet N. A standardized method for the sampling of rhizosphere and rhizoplan soil bacteria associated to a herbaceous root system. Ann Microbiol. 2013;63:471\u20136. https:\/\/doi.org\/10.1007\/s13213-012-0491-y.","journal-title":"Ann Microbiol"},{"key":"2439_CR22","doi-asserted-by":"publisher","first-page":"10713","DOI":"10.1021\/acs.est.0c02175","volume":"54","author":"T-T Zhu","year":"2020","unstructured":"Zhu T-T, Tian L-J, Yu H-Q. Phosphate-suppressed selenite biotransformation by Escherichia coli. Environ Sci Technol. 2020;54:10713\u201321. https:\/\/doi.org\/10.1021\/acs.est.0c02175.","journal-title":"Environ Sci Technol"},{"key":"2439_CR23","doi-asserted-by":"publisher","DOI":"10.1016\/j.jhazmat.2020.124690","volume":"406","author":"S Huang","year":"2021","unstructured":"Huang S, Wang Y, Tang C, Jia H, Wu L. Speeding up selenite bioremediation using the highly selenite-tolerant strain Providencia rettgeri HF16-a novel mechanism of selenite reduction based on proteomic analysis. J Hazard Mater. 2021;406:124690. https:\/\/doi.org\/10.1016\/j.jhazmat.2020.124690.","journal-title":"J Hazard Mater"},{"key":"2439_CR24","doi-asserted-by":"publisher","DOI":"10.3390\/ijms19092799","volume":"19","author":"Y Wang","year":"2018","unstructured":"Wang Y, Shu X, Zhou Q, Fan T, Wang T, Chen X, et al. Selenite reduction and the biogenesis of selenium nanoparticles by Alcaligenes faecalis Se03 isolated from the gut of Monochamus alternatus (Coleoptera: Cerambycidae). Int J Mol Sci. 2018;19:2799. https:\/\/doi.org\/10.3390\/ijms19092799.","journal-title":"Int J Mol Sci"},{"key":"2439_CR25","doi-asserted-by":"publisher","first-page":"140","DOI":"10.1016\/j.mimet.2011.04.009","volume":"86","author":"KC Biswas","year":"2011","unstructured":"Biswas KC, Barton LL, Tsui WL, Shuman K, Gillespie J, Eze CS. A novel method for the measurement of elemental selenium produced by bacterial reduction of selenite. J Microbiol Methods. 2011;86:140\u20134. https:\/\/doi.org\/10.1016\/j.mimet.2011.04.009.","journal-title":"J Microbiol Methods"},{"key":"2439_CR26","doi-asserted-by":"publisher","first-page":"2429","DOI":"10.1111\/ppa.13994","volume":"73","author":"H Liu","year":"2024","unstructured":"Liu H, Zhang Z, Xu Y, Du X, Wen J. The growth\u2010promoting effects of Bacillus amyloliquefaciens W82T\u201044 on soybean and its biocontrol potential against soybean Phytophthora root rot. Plant Pathol. 2024;73:2429\u201339. https:\/\/doi.org\/10.1111\/ppa.13994.","journal-title":"Plant Pathol"},{"key":"2439_CR27","doi-asserted-by":"publisher","DOI":"10.1016\/j.biocontrol.2019.104160","volume":"143","author":"R Jiao","year":"2019","unstructured":"Jiao R, Munir S, He P, Yang H, Wu Y, Wang J, et al. Biocontrol potential of the endophytic Bacillus amyloliquefaciens YN201732 against tobacco powdery mildew and its growth promotion. Biol Control. 2019;143:104160. https:\/\/doi.org\/10.1016\/j.biocontrol.2019.104160.","journal-title":"Biol Control"},{"key":"2439_CR28","doi-asserted-by":"publisher","DOI":"10.3390\/foods11091200","volume":"11","author":"Y Huang","year":"2022","unstructured":"Huang Y, Lei N, Xiong Y, Liu Y, Tong L, Wang F, et al. Influence of selenium biofortification of soybeans on speciation and transformation during seed germination and sprouts quality. Foods. 2022;11:1200. https:\/\/doi.org\/10.3390\/foods11091200.","journal-title":"Foods"},{"key":"2439_CR29","doi-asserted-by":"publisher","DOI":"10.1002\/ps.70022","author":"W Yan","year":"2025","unstructured":"Yan W, Zheng Q, Luo C, Zhang Z, Xu H. Bacillus amyloliquefaciens HN11 enhances cowpea growth and systemic resistance to Spodoptera litura via JA\/SA pathways and growth-mediated tolerance. Pest Manag Sci. 2025. https:\/\/doi.org\/10.1002\/ps.70022.","journal-title":"Pest Manag Sci"},{"key":"2439_CR30","doi-asserted-by":"publisher","first-page":"18198","DOI":"10.1021\/acs.jafc.5c03576","volume":"73","author":"H Liu","year":"2025","unstructured":"Liu H, Shi K, Zhang Y, Zhang L, Chen Y, Shi Y. Foliar application of nanoselenium: a novel strategy to enhance tuber quality, yield, and nitrogen use efficiency in potato. J Agric Food Chem. 2025;73:18198\u2013209. https:\/\/doi.org\/10.1021\/acs.jafc.5c03576.","journal-title":"J Agric Food Chem"},{"key":"2439_CR31","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2022.1009689","volume":"13","author":"X Chang","year":"2022","unstructured":"Chang X, Wei D, Zeng Y, Zhao X, Hu Y, Wu X, et al. Maize-soybean relay strip intercropping reshapes the rhizosphere bacterial community and recruits beneficial bacteria to suppress Fusarium root rot of soybean. Front Microbiol. 2022;13:1009689. https:\/\/doi.org\/10.3389\/fmicb.2022.1009689.","journal-title":"Front Microbiol"},{"key":"2439_CR32","doi-asserted-by":"publisher","first-page":"563","DOI":"10.1007\/s10658-017-1410-7","volume":"151","author":"X Chang","year":"2018","unstructured":"Chang X, Dai H, Wang D, Zhou H, He W, Fu Y, et al. Identification of Fusarium species associated with soybean root rot in Sichuan Province, China. Eur J Plant Pathol. 2018;151:563\u201377. https:\/\/doi.org\/10.1007\/s10658-017-1410-7.","journal-title":"Eur J Plant Pathol"},{"key":"2439_CR33","doi-asserted-by":"publisher","first-page":"i884","DOI":"10.1093\/bioinformatics\/bty560","volume":"34","author":"S Chen","year":"2018","unstructured":"Chen S, Zhou Y, Chen Y, Gu J. fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics. 2018;34:i884-90. https:\/\/doi.org\/10.1093\/bioinformatics\/bty560.","journal-title":"Bioinformatics"},{"key":"2439_CR34","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-019-1891-0","volume":"20","author":"D Wood","year":"2019","unstructured":"Wood D, Lu J, Langmead B. Improved metagenomic analysis with Kraken 2. Genome Biol. 2019;20:257. https:\/\/doi.org\/10.1186\/s13059-019-1891-0.","journal-title":"Genome Biol"},{"key":"2439_CR35","doi-asserted-by":"publisher","first-page":"1674","DOI":"10.1093\/bioinformatics\/btv033","volume":"31","author":"D Li","year":"2015","unstructured":"Li D, Liu CM, Luo R, Sadakane K, Lam TW. MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Bioinformatics. 2015;31:1674\u20136. https:\/\/doi.org\/10.1093\/bioinformatics\/btv033.","journal-title":"Bioinformatics"},{"key":"2439_CR36","doi-asserted-by":"publisher","first-page":"1026","DOI":"10.1038\/nbt.3988","volume":"35","author":"M Steinegger","year":"2017","unstructured":"Steinegger M, S\u00f6ding J. MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nat Biotechnol. 2017;35:1026\u20138. https:\/\/doi.org\/10.1038\/nbt.3988.","journal-title":"Nat Biotechnol"},{"key":"2439_CR37","doi-asserted-by":"publisher","first-page":"923","DOI":"10.1093\/bioinformatics\/btt656","volume":"30","author":"Y Liao","year":"2014","unstructured":"Liao Y, Smyth GK, Shi W. FeatureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics. 2014;30:923\u201330. https:\/\/doi.org\/10.1093\/bioinformatics\/btt656.","journal-title":"Bioinformatics"},{"key":"2439_CR38","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2011-12-6-r60","volume":"12","author":"N Segata","year":"2011","unstructured":"Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS, et al. Metagenomic biomarker discovery and explanation. Genome Biol. 2011;12:R60. https:\/\/doi.org\/10.1186\/gb-2011-12-6-r60.","journal-title":"Genome Biol"},{"key":"2439_CR39","doi-asserted-by":"publisher","first-page":"690","DOI":"10.1016\/j.chom.2015.04.004","volume":"17","author":"F B\u00e4ckhed","year":"2015","unstructured":"B\u00e4ckhed F, Roswall J, Peng Y, Feng Q, Jia H, Kovatcheva-Datchary P, et al. Dynamics and stabilization of the human gut microbiome during the first year of life. Cell Host Microbe. 2015;17:690\u2013703. https:\/\/doi.org\/10.1016\/j.chom.2015.04.004.","journal-title":"Cell Host Microbe"},{"key":"2439_CR40","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-023-29737-z","volume":"13","author":"S Huang","year":"2023","unstructured":"Huang S, Yu K, Wen L, Long X, Sun J, Liu Q, et al. Development and application of a new biological nano-selenium fermentation broth based on Bacillus subtilis SE201412. Sci Rep. 2023;13:2560. https:\/\/doi.org\/10.1038\/s41598-023-29737-z.","journal-title":"Sci Rep"},{"key":"2439_CR41","doi-asserted-by":"publisher","first-page":"231","DOI":"10.1016\/j.jenvman.2016.06.029","volume":"181","author":"AJ Kora","year":"2016","unstructured":"Kora AJ, Rastogi L. Biomimetic synthesis of selenium nanoparticles by Pseudomonas aeruginosa ATCC 27853: an approach for conversion of selenite. J Environ Manage. 2016;181:231\u20136. https:\/\/doi.org\/10.1016\/j.jenvman.2016.06.029.","journal-title":"J Environ Manage"},{"key":"2439_CR42","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0057404","volume":"8","author":"S Dwivedi","year":"2013","unstructured":"Dwivedi S, AlKhedhairy AA, Ahamed M, Musarrat J. Biomimetic synthesis of selenium nanospheres by bacterial strain JS-11 and its role as a biosensor for nanotoxicity assessment: a novel se-bioassay. PLoS One. 2013;8:e57404. https:\/\/doi.org\/10.1371\/journal.pone.0057404.","journal-title":"PLoS One"},{"key":"2439_CR43","doi-asserted-by":"publisher","first-page":"3","DOI":"10.1016\/j.jhazmat.2016.02.035","volume":"324","author":"S Lampis","year":"2017","unstructured":"Lampis S, Zonaro E, Bertolini C, Cecconi D, Monti F, Micaroni M, et al. Selenite biotransformation and detoxification by Stenotrophomonas maltophilia SeITE02: novel clues on the route to bacterial biogenesis of selenium nanoparticles. J Hazard Mater. 2017;324:3\u201314. https:\/\/doi.org\/10.1016\/j.jhazmat.2016.02.035.","journal-title":"J Hazard Mater"},{"key":"2439_CR44","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1049\/mnl.2011.0498","volume":"7","author":"KS Prasad","year":"2012","unstructured":"Prasad KS, Vyas P, Prajapati V, Patel P, Selvaraj K. Biomimetic synthesis of selenium nanoparticles using cell-free extract of Microbacterium sp. ARB05. Micro Nano Lett. 2012;7:1\u20134. https:\/\/doi.org\/10.1049\/mnl.2011.0498.","journal-title":"Micro Nano Lett"},{"key":"2439_CR45","doi-asserted-by":"publisher","first-page":"1457","DOI":"10.1016\/j.jinorgbio.2007.06.021","volume":"101","author":"D Peng","year":"2007","unstructured":"Peng D, Zhang J, Liu Q, Taylor EW. Size effect of elemental selenium nanoparticles (Nano-Se) at supranutritional levels on selenium accumulation and glutathione S-transferase activity. J Inorg Biochem. 2007;101:1457\u201363. https:\/\/doi.org\/10.1016\/j.jinorgbio.2007.06.021.","journal-title":"J Inorg Biochem"},{"key":"2439_CR46","doi-asserted-by":"publisher","first-page":"1713","DOI":"10.1021\/es5043063","volume":"49","author":"R Jain","year":"2015","unstructured":"Jain R, Jordan N, Weiss S, Foerstendorf H, Heim K, Kacker R, et al. Extracellular polymeric substances govern the surface charge of biogenic elemental selenium nanoparticles. Environ Sci Technol. 2015;49:1713\u201320. https:\/\/doi.org\/10.1021\/es5043063.","journal-title":"Environ Sci Technol"},{"key":"2439_CR47","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1042\/ba20100042","volume":"56","author":"M Shakibaie","year":"2010","unstructured":"Shakibaie M, Khorramizadeh MR, Faramarzi MA, Sabzevari O, Shahverdi AR. Biosynthesis and recovery of selenium nanoparticles and the effects on matrix metalloproteinase-2 expression. Biotechnol Appl Biochem. 2010;56:7\u201315. https:\/\/doi.org\/10.1042\/ba20100042.","journal-title":"Biotechnol Appl Biochem"},{"key":"2439_CR48","doi-asserted-by":"publisher","first-page":"196","DOI":"10.1016\/j.colsurfb.2011.06.031","volume":"88","author":"W Zhang","year":"2011","unstructured":"Zhang W, Chen Z, Liu H, Zhang L, Gao P, Li D. Biosynthesis and structural characteristics of selenium nanoparticles by Pseudomonas alcaliphila. Colloids Surf B Biointerfaces. 2011;88:196\u2013201. https:\/\/doi.org\/10.1016\/j.colsurfb.2011.06.031.","journal-title":"Colloids Surf B Biointerfaces"},{"key":"2439_CR49","doi-asserted-by":"publisher","first-page":"236","DOI":"10.1007\/s12011-015-0260-4","volume":"166","author":"A Khaliq","year":"2015","unstructured":"Khaliq A, Aslam F, Matloob A, Hussain S, Geng M, Wahid A, et al. Seed priming with selenium: consequences for emergence, seedling growth, and biochemical attributes of rice. Biol Trace Elem Res. 2015;166:236\u201344. https:\/\/doi.org\/10.1007\/s12011-015-0260-4.","journal-title":"Biol Trace Elem Res"},{"key":"2439_CR50","doi-asserted-by":"publisher","first-page":"58","DOI":"10.1016\/j.envexpbot.2012.09.002","volume":"87","author":"R Feng","year":"2013","unstructured":"Feng R, Wei C, Tu S. The roles of selenium in protecting plants against abiotic stresses. Environ Exp Bot. 2013;87:58\u201368. https:\/\/doi.org\/10.1016\/j.envexpbot.2012.09.002.","journal-title":"Environ Exp Bot"},{"key":"2439_CR51","doi-asserted-by":"publisher","first-page":"840","DOI":"10.1111\/j.1365-313X.2010.04197.x","volume":"62","author":"K Schlaeppi","year":"2010","unstructured":"Schlaeppi K, Abou-Mansour E, Buchala A, Mauch F. Disease resistance of Arabidopsis to Phytophthora brassicae is established by the sequential action of indole glucosinolates and camalexin. Plant J. 2010;62:840\u201351. https:\/\/doi.org\/10.1111\/j.1365-313X.2010.04197.x.","journal-title":"Plant J"},{"key":"2439_CR52","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2015.00539","volume":"6","author":"S Lemari\u00e9","year":"2015","unstructured":"Lemari\u00e9 S, Robert-Seilaniantz A, Lariagon C, Lemoine J, Marnet N, Levrel A, et al. Camalexin contributes to the partial resistance of Arabidopsis thaliana to the biotrophic soilborne protist Plasmodiophora brassicae. Front Plant Sci. 2015;6:539. https:\/\/doi.org\/10.3389\/fpls.2015.00539.","journal-title":"Front Plant Sci"},{"key":"2439_CR53","doi-asserted-by":"publisher","first-page":"336","DOI":"10.1016\/S2095-3119(20)63594-8","volume":"21","author":"D Jun-cai","year":"2022","unstructured":"Jun-cai D, Xiao-man LI, Xin-li X, Hai-jun WU, Cai-qiong Y, Xi-yang L, et al. Field mold stress induced catabolism of storage reserves in soybean seed and the resulting deterioration of seed quality in the field. J Integr Agr. 2022;21:336\u201350. https:\/\/doi.org\/10.1016\/S2095-3119(20)63594-8.","journal-title":"J Integr Agr"},{"key":"2439_CR54","doi-asserted-by":"publisher","DOI":"10.3390\/ijms20010130","volume":"20","author":"L Luo","year":"2019","unstructured":"Luo L, Qin R, Liu T, Yu M, Yang T, Xu G. OsASN1 plays a critical role in asparagine-dependent rice development. Int J Mol Sci. 2019;20:130. https:\/\/doi.org\/10.3390\/ijms20010130.","journal-title":"Int J Mol Sci"},{"key":"2439_CR55","doi-asserted-by":"publisher","first-page":"698","DOI":"10.4161\/psb.5.6.11579","volume":"5","author":"MC Terrile","year":"2010","unstructured":"Terrile MC, Ton\u00f3n CV, Iglesias MJ, Lamattina L, Casalongu\u00e9 CA. Extracellular ATP and nitric oxide signaling pathways regulate redox-dependent responses associated to root hair growth in etiolated Arabidopsis seedlings. Plant Signal Behav. 2010;5:698\u2013701. https:\/\/doi.org\/10.4161\/psb.5.6.11579.","journal-title":"Plant Signal Behav"},{"key":"2439_CR56","doi-asserted-by":"publisher","DOI":"10.1186\/s12951-024-03073-4","volume":"23","author":"P Sun","year":"2025","unstructured":"Sun P, Ge G, Sun L, Bao J, Zhao M, Hao J, et al. Metabolomics combined with physiology and transcriptomics reveal the regulation of key nitrogen metabolic pathways in alfalfa by foliar spraying with nano-selenium. J Nanobiotechnol. 2025;23:7. https:\/\/doi.org\/10.1186\/s12951-024-03073-4.","journal-title":"J Nanobiotechnol"},{"key":"2439_CR57","doi-asserted-by":"publisher","DOI":"10.1016\/j.matlet.2022.132079","volume":"317","author":"H He","year":"2022","unstructured":"He H, Liu C, Shao C, Wu Y, Huang Q. Green synthesis of ultrasmall selenium nanoparticles (SeNPs) using Hericium erinaceus polysaccharide (HEP) as nanozymes for efficient intracellular antioxidation. Mater Lett. 2022;317:132079. https:\/\/doi.org\/10.1016\/j.matlet.2022.132079.","journal-title":"Mater Lett"},{"key":"2439_CR58","doi-asserted-by":"publisher","first-page":"1159","DOI":"10.1073\/pnas.1109326109","volume":"109","author":"JD van Elsas","year":"2012","unstructured":"van Elsas JD, Chiurazzi M, Mallon CA, Elhottov\u0101 D, Kri\u0161t\u016ffek V, Salles JF. Microbial diversity determines the invasion of soil by a bacterial pathogen. Proc Natl Acad Sci U S A. 2012;109:1159\u201364. https:\/\/doi.org\/10.1073\/pnas.1109326109.","journal-title":"Proc Natl Acad Sci U S A"},{"key":"2439_CR59","doi-asserted-by":"publisher","DOI":"10.1016\/j.apsoil.2024.105806","volume":"206","author":"W Wei","year":"2025","unstructured":"Wei W, Ma M, Jiang X, Fan F, Meng F, Cao F, et al. Long-term effects of nitrogen fertilization and Bradyrhizobium inoculation on diazotrophic community structure and diversity in soybean cultivation. Appl Soil Ecol. 2025;206:105806. https:\/\/doi.org\/10.1016\/j.apsoil.2024.105806.","journal-title":"Appl Soil Ecol"},{"key":"2439_CR60","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2019.02230","volume":"10","author":"I Gifford","year":"2019","unstructured":"Gifford I, Vance S, Nguyen G, Berry AM. A stable genetic transformation system and implications of the type IV restriction system in the nitrogen-fixing plant endosymbiont Frankia alni ACN14a. Front Microbiol. 2019;10:2230. https:\/\/doi.org\/10.3389\/fmicb.2019.02230.","journal-title":"Front Microbiol"},{"key":"2439_CR61","doi-asserted-by":"publisher","first-page":"190","DOI":"10.1016\/j.wasman.2020.02.010","volume":"105","author":"X Wu","year":"2020","unstructured":"Wu X, Sun Y, Deng L, Meng Q, Jiang X, Bello A, et al. Insight to key diazotrophic community during composting of dairy manure with biochar and its role in nitrogen transformation. Waste Manag. 2020;105:190\u20137. https:\/\/doi.org\/10.1016\/j.wasman.2020.02.010.","journal-title":"Waste Manag"},{"key":"2439_CR62","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms13061202","volume":"13","author":"V Jayasekera","year":"2025","unstructured":"Jayasekera V, Han Y, Du L. Identification of pyrrole-2-carboxylic acid from the biocontrol agent Lysobacter involved in interactions with Fusarial fungi. Microorganisms. 2025;13:1202. https:\/\/doi.org\/10.3390\/microorganisms13061202.","journal-title":"Microorganisms"},{"key":"2439_CR63","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2015.01243","volume":"6","author":"R G\u00f3mez Exp\u00f3sito","year":"2015","unstructured":"G\u00f3mez Exp\u00f3sito R, Postma J, Raaijmakers JM, De Bruijn I. Diversity and activity of Lysobacter species from disease suppressive soils. Front Microbiol. 2015;6:1243. https:\/\/doi.org\/10.3389\/fmicb.2015.01243.","journal-title":"Front Microbiol"},{"key":"2439_CR64","doi-asserted-by":"publisher","first-page":"457","DOI":"10.1590\/S1982-56762008000600010","volume":"33","author":"R Carrer Filho","year":"2008","unstructured":"Carrer Filho R, Romeiro R, Garcia F. Biocontrol of foliar disease of tomato plants by Nocardioides thermolilacinus. Trop Plant Pathol. 2008;33:457\u201360. https:\/\/doi.org\/10.1590\/S1982-56762008000600010.","journal-title":"Trop Plant Pathol"},{"key":"2439_CR65","doi-asserted-by":"publisher","first-page":"419","DOI":"10.1007\/s00253-010-2857-z","volume":"89","author":"Y Ikunaga","year":"2011","unstructured":"Ikunaga Y, Sato I, Grond S, Numaziri N, Yoshida S, Yamaya H, et al. Nocardioides sp. strain WSN05-2, isolated from a wheat field, degrades deoxynivalenol, producing the novel intermediate 3-epi-deoxynivalenol. Appl Microbiol Biotechnol. 2011;89:419\u201327. https:\/\/doi.org\/10.1007\/s00253-010-2857-z.","journal-title":"Appl Microbiol Biotechnol"},{"key":"2439_CR66","doi-asserted-by":"publisher","first-page":"82","DOI":"10.1016\/j.phytochem.2018.02.003","volume":"149","author":"CA Schenck","year":"2018","unstructured":"Schenck CA, Maeda HA. Tyrosine biosynthesis, metabolism, and catabolism in plants. Phytochemistry. 2018;149:82\u2013102. https:\/\/doi.org\/10.1016\/j.phytochem.2018.02.003.","journal-title":"Phytochemistry"},{"key":"2439_CR67","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2016.02074","volume":"7","author":"M Gupta","year":"2017","unstructured":"Gupta M, Gupta S. An overview of selenium uptake, metabolism, and toxicity in plants. Front Plant Sci. 2017;7:2074. https:\/\/doi.org\/10.3389\/fpls.2016.02074.","journal-title":"Front Plant Sci"},{"key":"2439_CR68","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2015.00280","volume":"6","author":"M Malagoli","year":"2015","unstructured":"Malagoli M, Schiavon M, dall\u2019Acqua S, Pilon-Smits EAH. Effects of selenium biofortification on crop nutritional quality. Front Plant Sci. 2015;6:280. https:\/\/doi.org\/10.3389\/fpls.2015.00280.","journal-title":"Front Plant Sci"}],"container-title":["Microbiome"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/article\/10.1186\/s40168-026-02439-0","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s40168-026-02439-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/s40168-026-02439-0.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,6,4]],"date-time":"2026-06-04T23:20:29Z","timestamp":1780615229000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1186\/s40168-026-02439-0"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,5,29]]},"references-count":68,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2026,12]]}},"alternative-id":["2439"],"URL":"https:\/\/doi.org\/10.1186\/s40168-026-02439-0","relation":{},"ISSN":["2049-2618"],"issn-type":[{"value":"2049-2618","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,5,29]]},"assertion":[{"value":"25 October 2025","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"30 April 2026","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"29 May 2026","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}},{"order":1,"name":"Ethics","group":{"name":"EthicsHeading","label":"Declarations"}},{"value":"Not applicable.","order":2,"name":"Ethics","group":{"name":"EthicsHeading","label":"Ethics approval and consent to participate"}},{"value":"Not applicable.","order":3,"name":"Ethics","group":{"name":"EthicsHeading","label":"Consent for publication"}},{"value":"The authors declare that they have no competing interests.","order":4,"name":"Ethics","group":{"name":"EthicsHeading","label":"Competing interests"}}],"article-number":"162"}}