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The proliferation of this fungus in indoor environments has been associated to health risks and its conidia can cause allergic reaction and severe invasive disease in animals and humans. Therefore, the detection and monitoring of\n                      <jats:italic>Aspergillus<\/jats:italic>\n                      conidia is of utmost importance to prevent serious fungal infections and contaminations. Among others, aptamers could serve as biosensors for the specific detection of fungal spores.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>\n                      In this study, DNA aptamers specific to conidia of\n                      <jats:italic>A. niger<\/jats:italic>\n                      were developed by optimizing a whole-cell SELEX approach. Three whole-cells SELEX experiments were performed in parallel with similar conditions. Quantification of recovered ssDNA and melting curve analyses were applied to monitor the ongoing SELEX process. Next-generation sequencing was performed on selected recovered ssDNA pools, allowing the identification of DNA aptamers which bind with high affinity to the target cells. The developed aptamers were shown to be species-specific, being able to bind to\n                      <jats:italic>A. niger<\/jats:italic>\n                      but not to\n                      <jats:italic>A. tubingensis<\/jats:italic>\n                      or to\n                      <jats:italic>A. nidulans<\/jats:italic>\n                      . The binding affinity of two aptamers (AN01-R9-006 and AN02-R9-185) was measured to be 58.97\u00a0nM and 138.71\u00a0nM, respectively, which is in the range of previously developed aptamers.\n                    <\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Conclusions<\/jats:title>\n                    <jats:p>\n                      This study demonstrates that species-specific aptamers can be successfully developed via whole-cell SELEX to distinguish different\n                      <jats:italic>Aspergillus<\/jats:italic>\n                      species and opens up new opportunities in the field of diagnostics of fungal infections.\n                    <\/jats:p>\n                  <\/jats:sec>","DOI":"10.1186\/s40694-024-00185-2","type":"journal-article","created":{"date-parts":[[2024,11,5]],"date-time":"2024-11-05T07:01:51Z","timestamp":1730790111000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":6,"title":["Development of a whole-cell SELEX process to select species-specific aptamers against Aspergillus niger"],"prefix":"10.1186","volume":"11","author":[{"given":"Valeria","family":"Ellena","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alexandra","family":"Ioannou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Claudia","family":"Kolm","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andreas H.","family":"Farnleiter","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Matthias G.","family":"Steiger","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2024,11,5]]},"reference":[{"key":"185_CR1","doi-asserted-by":"publisher","first-page":"125","DOI":"10.1089\/nat.2012.0406","volume":"23","author":"M Avci-Adali","year":"2013","unstructured":"Avci-Adali M, Wilhelm N, Perle N, Stoll H, Schlensak C, Wendel HP. 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