{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,6,8]],"date-time":"2024-06-08T05:18:37Z","timestamp":1717823917306},"reference-count":58,"publisher":"Springer Science and Business Media LLC","issue":"S8","license":[{"start":{"date-parts":[[2011,10,3]],"date-time":"2011-10-03T00:00:00Z","timestamp":1317600000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["BMC Bioinformatics"],"published-print":{"date-parts":[[2011,12]]},"DOI":"10.1186\/1471-2105-12-s8-s2","type":"journal-article","created":{"date-parts":[[2011,10,5]],"date-time":"2011-10-05T00:44:22Z","timestamp":1317775462000},"source":"Crossref","is-referenced-by-count":64,"title":["The gene normalization task in BioCreative III"],"prefix":"10.1186","volume":"12","author":[{"given":"Zhiyong","family":"Lu","sequence":"first","affiliation":[]},{"given":"Hung-Yu","family":"Kao","sequence":"additional","affiliation":[]},{"given":"Chih-Hsuan","family":"Wei","sequence":"additional","affiliation":[]},{"given":"Minlie","family":"Huang","sequence":"additional","affiliation":[]},{"given":"Jingchen","family":"Liu","sequence":"additional","affiliation":[]},{"given":"Cheng-Ju","family":"Kuo","sequence":"additional","affiliation":[]},{"given":"Chun-Nan","family":"Hsu","sequence":"additional","affiliation":[]},{"given":"Richard Tzong-Han","family":"Tsai","sequence":"additional","affiliation":[]},{"given":"Hong-Jie","family":"Dai","sequence":"additional","affiliation":[]},{"given":"Naoaki","family":"Okazaki","sequence":"additional","affiliation":[]},{"given":"Han-Cheol","family":"Cho","sequence":"additional","affiliation":[]},{"given":"Martin","family":"Gerner","sequence":"additional","affiliation":[]},{"given":"Illes","family":"Solt","sequence":"additional","affiliation":[]},{"given":"Shashank","family":"Agarwal","sequence":"additional","affiliation":[]},{"given":"Feifan","family":"Liu","sequence":"additional","affiliation":[]},{"given":"Dina","family":"Vishnyakova","sequence":"additional","affiliation":[]},{"given":"Patrick","family":"Ruch","sequence":"additional","affiliation":[]},{"given":"Martin","family":"Romacker","sequence":"additional","affiliation":[]},{"given":"Fabio","family":"Rinaldi","sequence":"additional","affiliation":[]},{"given":"Sanmitra","family":"Bhattacharya","sequence":"additional","affiliation":[]},{"given":"Padmini","family":"Srinivasan","sequence":"additional","affiliation":[]},{"given":"Hongfang","family":"Liu","sequence":"additional","affiliation":[]},{"given":"Manabu","family":"Torii","sequence":"additional","affiliation":[]},{"given":"Sergio","family":"Matos","sequence":"additional","affiliation":[]},{"given":"David","family":"Campos","sequence":"additional","affiliation":[]},{"given":"Karin","family":"Verspoor","sequence":"additional","affiliation":[]},{"given":"Kevin M","family":"Livingston","sequence":"additional","affiliation":[]},{"given":"W John","family":"Wilbur","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2011,10,3]]},"reference":[{"issue":"Suppl 2","key":"4796_CR1","doi-asserted-by":"publisher","first-page":"S3","DOI":"10.1186\/gb-2008-9-s2-s3","volume":"9","author":"AA Morgan","year":"2008","unstructured":"Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, et al.: Overview of BioCreative II gene normalization. Genome Biol 2008, 9(Suppl 2):S3. 10.1186\/gb-2008-9-s2-s3","journal-title":"Genome Biol"},{"issue":"Suppl 1","key":"4796_CR2","doi-asserted-by":"publisher","first-page":"S11","DOI":"10.1186\/1471-2105-6-S1-S11","volume":"6","author":"L Hirschman","year":"2005","unstructured":"Hirschman L, Colosimo M, Morgan A, Yeh A: Overview of BioCreAtIvE task 1B: normalized gene lists. BMC Bioinformatics 2005, 6(Suppl 1):S11. 10.1186\/1471-2105-6-S1-S11","journal-title":"BMC Bioinformatics"},{"issue":"Suppl 1","key":"4796_CR3","doi-asserted-by":"publisher","first-page":"S12","DOI":"10.1186\/1471-2105-6-S1-S12","volume":"6","author":"ME Colosimo","year":"2005","unstructured":"Colosimo ME, Morgan AA, Yeh AS, Colombe JB, Hirschman L: Data preparation and interannotator agreement: BioCreAtIvE task 1B. BMC Bioinformatics 2005, 6(Suppl 1):S12. 10.1186\/1471-2105-6-S1-S12","journal-title":"BMC Bioinformatics"},{"key":"4796_CR4","doi-asserted-by":"publisher","first-page":"bap019","DOI":"10.1093\/database\/bap019","volume":"2009","author":"KG Dowell","year":"2009","unstructured":"Dowell KG, McAndrews-Hill MS, Hill DP, Drabkin HJ, Blake JA: Integrating text mining into the MGI biocuration workflow. Database (Oxford) 2009, 2009: bap019.","journal-title":"Database (Oxford)"},{"issue":"14","key":"4796_CR5","doi-asserted-by":"publisher","first-page":"1708","DOI":"10.1093\/bioinformatics\/btq270","volume":"26","author":"HD Carroll","year":"2010","unstructured":"Carroll HD, Kann MG, Sheetlin SL, Spouge JL: Threshold Average Precision (TAP-k): a measure of retrieval designed for bioinformatics. Bioinformatics 2010, 26(14):1708\u20131713. 10.1093\/bioinformatics\/btq270","journal-title":"Bioinformatics"},{"key":"4796_CR6","volume-title":"Proceedings of the Conference on Empirical Methods in Natural Language Processing","author":"R Snow","year":"2008","unstructured":"Snow R, O'Connor B, Jurafsky D, Ng AY: Cheap and fast---but is it good?: evaluating non-expert annotations for natural language tasks. In Proceedings of the Conference on Empirical Methods in Natural Language Processing. Honolulu, Hawaii: Association for Computational Linguistics; 2008."},{"key":"4796_CR7","volume-title":"Proceeding of the 14th ACM SIGKDD international conference on Knowledge discovery and data mining","author":"VS Sheng","year":"2008","unstructured":"Sheng VS, Provost F, Ipeirotis PG: Get another label? improving data quality and data mining using multiple, noisy labelers. In Proceeding of the 14th ACM SIGKDD international conference on Knowledge discovery and data mining. Las Vegas, Nevada, USA: ACM; 2008."},{"key":"4796_CR8","volume-title":"Proceedings of the 15th ACM SIGKDD international conference on Knowledge discovery and data mining","author":"P Donmez","year":"2009","unstructured":"Donmez P, Carbonell JG, Schneider J: Efficiently learning the accuracy of labelling sources for selective sampling. In Proceedings of the 15th ACM SIGKDD international conference on Knowledge discovery and data mining. Paris, France: ACM; 2009."},{"key":"4796_CR9","first-page":"2035","volume-title":"Advances in Neural Information Processing Systems","author":"J Whitechill","year":"2009","unstructured":"Whitechill J, Ruvolo P, Wu T, Bergsma J, Movellan J: Whose vote should count more: optimal integration of labels from labelers of unknown expertise. Advances in Neural Information Processing Systems 2009, 2035\u20133043."},{"key":"4796_CR10","volume-title":"Workshop on Advancing Computer Vision with Humans in the Loop at CVPR'10","author":"P Welinder","year":"2010","unstructured":"Welinder P, Perona P: Online crowdsourcing: rating annotators and obtaining cost-effective labels. Workshop on Advancing Computer Vision with Humans in the Loop at CVPR'10 2010."},{"key":"4796_CR11","first-page":"1085","volume":"7","author":"P Smyth","year":"1995","unstructured":"Smyth P, Fayyad U, Burl M, Perona P, Baldi P: Inferring ground truth from subjective labelling of venus images. Advances in Neural Information Processing Systems 1995, 7: 1085\u20131092.","journal-title":"Advances in Neural Information Processing Systems"},{"key":"4796_CR12","first-page":"1297","volume":"11","author":"VC Raykar","year":"2010","unstructured":"Raykar VC, Yu S, Zhao LH, Valadez GH, Florin C, Bogoni L, Moy L: Learning From Crowds. Journal of Machine Learning Research 2010, 11: 1297\u20131322.","journal-title":"Journal of Machine Learning Research"},{"issue":"1","key":"4796_CR13","first-page":"20","volume":"28","author":"AP Dawid","year":"1979","unstructured":"Dawid AP, Skene AM: Maximum Likelihood Estimation of Observer Error-Rates Using the EM Algorithm. Journal of the Royal Statistical Society Series C (Applied Statistics) 1979, 28(1):20\u201328.","journal-title":"Journal of the Royal Statistical Society Series C (Applied Statistics)"},{"issue":"1","key":"4796_CR14","doi-asserted-by":"publisher","first-page":"163","DOI":"10.1142\/S0219720010004562","volume":"8","author":"D Rebholz-Schuhmann","year":"2010","unstructured":"Rebholz-Schuhmann D, Yepes AJ, Van Mulligen EM, Kang N, Kors J, Milward D, Corbett P, Buyko E, Beisswanger E, Hahn U: CALBC silver standard corpus. J Bioinform Comput Biol 2010, 8(1):163\u2013179. 10.1142\/S0219720010004562","journal-title":"J Bioinform Comput Biol"},{"key":"4796_CR15","volume-title":"Proceedings of the Workshop on BioNLP","author":"T Kappeler","year":"2009","unstructured":"Kappeler T, Kaljurand K, Rinaldi F: TX task: automatic detection of focus organisms in biomedical publications. In Proceedings of the Workshop on BioNLP. Boulder, Colorado: Association for Computational Linguistics; 2009."},{"issue":"5","key":"4796_CR16","doi-asserted-by":"publisher","first-page":"661","DOI":"10.1093\/bioinformatics\/btq002","volume":"26","author":"X Wang","year":"2010","unstructured":"Wang X, Tsujii J, Ananiadou S: Disambiguating the species of biomedical named entities using natural language parsers. Bioinformatics 2010, 26(5):661\u2013667. 10.1093\/bioinformatics\/btq002","journal-title":"Bioinformatics"},{"key":"4796_CR17","first-page":"4","volume-title":"Proceedings of the 10th European Conference on Machine Learning","author":"DD Lewis","year":"1998","unstructured":"Lewis DD: Naive (Bayes) at Forty: The Independence Assumption in Information Retrieval. In Proceedings of the 10th European Conference on Machine Learning. Springer-Verlag; 1998:4\u201315."},{"key":"4796_CR18","first-page":"41","volume-title":"AAAI-98 WORKSHOP ON LEARNING FOR TEXT CATEGORIZATION","author":"A McCallum","year":"1998","unstructured":"McCallum A, Nigam K: A comparison of event models for Naive Bayes text classification. AAAI-98 WORKSHOP ON LEARNING FOR TEXT CATEGORIZATION 1998, 41\u201348."},{"issue":"3","key":"4796_CR19","doi-asserted-by":"publisher","first-page":"385","DOI":"10.1109\/TCBB.2010.61","volume":"7","author":"F Leitner","year":"2010","unstructured":"Leitner F, Mardis SA, Krallinger M, Cesareni G, Hirschman LA, Valencia A: An Overview of BioCreative II.5. IEEE\/ACM Trans Comput Biol Bioinform 2010, 7(3):385\u2013399.","journal-title":"IEEE\/ACM Trans Comput Biol Bioinform"},{"issue":"Suppl 2","key":"4796_CR20","doi-asserted-by":"publisher","first-page":"S2","DOI":"10.1186\/gb-2008-9-s2-s2","volume":"9","author":"L Smith","year":"2008","unstructured":"Smith L, Tanabe LK, Ando RJ, Kuo CJ, Chung IF, Hsu CN, Lin YS, Klinger R, Friedrich CM, Ganchev K, et al.: Overview of BioCreative II gene mention recognition. Genome Biol 2008, 9(Suppl 2):S2. 10.1186\/gb-2008-9-s2-s2","journal-title":"Genome Biol"},{"key":"4796_CR21","volume-title":"Proceedings of the twenty-first international conference on Machine learning","author":"T Zhang","year":"2004","unstructured":"Zhang T: Solving large scale linear prediction problems using stochastic gradient descent algorithms. In Proceedings of the twenty-first international conference on Machine learning. Banff, Alberta, Canada: ACM; 2004."},{"key":"4796_CR22","unstructured":"Classias: A collection of machine-learning algorithms for classification[\n                    http:\/\/www.chokkan.org\/software\/classias\/\n                    \n                  ]"},{"issue":"1","key":"4796_CR23","doi-asserted-by":"publisher","first-page":"10","DOI":"10.1145\/1656274.1656278","volume":"11","author":"M Hall","year":"2009","unstructured":"Hall M, Frank E, Holmes G, Pfahringer B, Reutemann P, Witten IH: The WEKA data mining software: an update. SIGKDD Explor Newsl 2009, 11(1):10\u201318. 10.1145\/1656274.1656278","journal-title":"SIGKDD Explor Newsl"},{"key":"4796_CR24","unstructured":"MALLET: MAchine Learning for LanguagE Toolkit[\n                    http:\/\/mallet.cs.umass.edu\/\n                    \n                  ]"},{"key":"4796_CR25","doi-asserted-by":"publisher","first-page":"85","DOI":"10.1186\/1471-2105-11-85","volume":"11","author":"M Gerner","year":"2010","unstructured":"Gerner M, Nenadic G, Bergman CM: LINNAEUS: a species name identification system for biomedical literature. BMC Bioinformatics 2010, 11: 85. 10.1186\/1471-2105-11-85","journal-title":"BMC Bioinformatics"},{"issue":"14","key":"4796_CR26","doi-asserted-by":"publisher","first-page":"3191","DOI":"10.1093\/bioinformatics\/bti475","volume":"21","author":"B Settles","year":"2005","unstructured":"Settles B: ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text. Bioinformatics 2005, 21(14):3191\u20133192. 10.1093\/bioinformatics\/bti475","journal-title":"Bioinformatics"},{"issue":"13","key":"4796_CR27","doi-asserted-by":"publisher","first-page":"i286","DOI":"10.1093\/bioinformatics\/btn183","volume":"24","author":"CN Hsu","year":"2008","unstructured":"Hsu CN, Chang YM, Kuo CJ, Lin YS, Huang HS, Chung IF: Integrating high dimensional bi-directional parsing models for gene mention tagging. Bioinformatics 2008, 24(13):i286\u2013294. 10.1093\/bioinformatics\/btn183","journal-title":"Bioinformatics"},{"key":"4796_CR28","first-page":"652","volume-title":"Pac Symp Biocomput","author":"R Leaman","year":"2008","unstructured":"Leaman R, Gonzalez G: BANNER: an executable survey of advances in biomedical named entity recognition. Pac Symp Biocomput 2008, 652\u2013663."},{"issue":"Suppl 2","key":"4796_CR29","doi-asserted-by":"publisher","first-page":"S14","DOI":"10.1186\/gb-2008-9-s2-s14","volume":"9","author":"J Hakenberg","year":"2008","unstructured":"Hakenberg J, Plake C, Royer L, Strobelt H, Leser U, Schroeder M: Gene mention normalization and interaction extraction with context models and sentence motifs. Genome Biol 2008, 9(Suppl 2):S14. 10.1186\/gb-2008-9-s2-s14","journal-title":"Genome Biol"},{"key":"4796_CR30","unstructured":"NERsuite: A Named Entity Recognition toolkit[\n                    http:\/\/www-tsujii.is.s.u-tokyo.ac.jp\/nersuite\/\n                    \n                  ]"},{"key":"4796_CR31","unstructured":"LingPipe 4.0.0[\n                    http:\/\/alias-i.com\/lingpipe\n                    \n                  ]"},{"key":"4796_CR32","unstructured":"Entrez Gene[\n                    http:\/\/www.ncbi.nlm.nih.gov\/gene\n                    \n                  ]"},{"key":"4796_CR33","unstructured":"Gene and Protein Synonym DataBase[\n                    http:\/\/www.expasy.ch\/gpsdb\/\n                    \n                  ]"},{"issue":"5","key":"4796_CR34","first-page":"40","volume":"61","author":"C Lindberg","year":"1990","unstructured":"Lindberg C: The Unified Medical Language System (UMLS) of the National Library of Medicine. J Am Med Rec Assoc 1990, 61(5):40\u201342.","journal-title":"J Am Med Rec Assoc"},{"key":"4796_CR35","unstructured":"Gene Ontology Annotation (UniProtKB-GOA) Database[\n                    http:\/\/www.ebi.ac.uk\/GOA\n                    \n                  ]"},{"key":"4796_CR36","unstructured":"Cell Line Knowledge Base[\n                    http:\/\/clkb.ncibi.org\/index.php\n                    \n                  ]"},{"issue":"23","key":"4796_CR37","doi-asserted-by":"publisher","first-page":"2760","DOI":"10.1093\/bioinformatics\/btn502","volume":"24","author":"S Sarntivijai","year":"2008","unstructured":"Sarntivijai S, Ade AS, Athey BD, States DJ: A bioinformatics analysis of the cell line nomenclature. Bioinformatics 2008, 24(23):2760\u20132766. 10.1093\/bioinformatics\/btn502","journal-title":"Bioinformatics"},{"key":"4796_CR38","unstructured":"Apache Lucene[\n                    http:\/\/lucene.apache.org\n                    \n                  ]"},{"issue":"1","key":"4796_CR39","doi-asserted-by":"publisher","first-page":"103","DOI":"10.1093\/bioinformatics\/bti749","volume":"22","author":"H Liu","year":"2006","unstructured":"Liu H, Hu ZZ, Zhang J, Wu C: BioThesaurus: a web-based thesaurus of protein and gene names. Bioinformatics 2006, 22(1):103\u2013105. 10.1093\/bioinformatics\/bti749","journal-title":"Bioinformatics"},{"key":"4796_CR40","unstructured":"GOCat \u2013 Gene Ontology Categorizer[\n                    http:\/\/eagl.unige.ch\/GOCat\n                    \n                  ]"},{"key":"4796_CR41","unstructured":"GenNorm[\n                    http:\/\/ikmbio.csie.ncku.edu.tw\/GN\/\n                    \n                  ]"},{"issue":"27","key":"4796_CR42","doi-asserted-by":"publisher","first-page":"1032","DOI":"10.1093\/bioinformatics\/btr042","volume":"1","author":"M Huang","year":"2011","unstructured":"Huang M, Liu J, Zhu X: GeneTUKit: a software for document-level gene normalization. Bioinformatics 2011, 1(27):1032\u20131033.","journal-title":"Bioinformatics"},{"key":"4796_CR43","unstructured":"IASL-IISR Gene Mention\/Normalization Tool[\n                    http:\/\/sites.google.com\/site\/potinglai\/downloads\n                    \n                  ]"},{"issue":"3","key":"4796_CR44","doi-asserted-by":"publisher","first-page":"412","DOI":"10.1109\/TCBB.2010.45","volume":"7","author":"D Hong-Jie","year":"2010","unstructured":"Hong-Jie D, Po-Ting L, Tsai RTH: Multistage Gene Normalization and SVM-Based Ranking for Protein Interactor Extraction in Full-Text Articles. IEEE\/ACM Trans Comput Biol Bioinform 2010, 7(3):412\u2013420.","journal-title":"IEEE\/ACM Trans Comput Biol Bioinform"},{"key":"4796_CR45","first-page":"24","volume-title":"Proceedings of the BioCreative III workshop","author":"Z Lu","year":"2010","unstructured":"Lu Z, Wilbur WJ: Overview of BioCreative III Gene Normalization. In Proceedings of the BioCreative III workshop. Bethesda, MD, USA; 2010:24\u201345."},{"issue":"6","key":"4796_CR46","doi-asserted-by":"publisher","first-page":"658","DOI":"10.1093\/bioinformatics\/bti783","volume":"22","author":"P Ruch","year":"2006","unstructured":"Ruch P: Automatic assignment of biomedical categories: toward a generic approach. Bioinformatics 2006, 22(6):658\u2013664. 10.1093\/bioinformatics\/bti783","journal-title":"Bioinformatics"},{"issue":"Suppl 2","key":"4796_CR47","doi-asserted-by":"publisher","first-page":"S13","DOI":"10.1186\/gb-2008-9-s2-s13","volume":"9","author":"F Rinaldi","year":"2008","unstructured":"Rinaldi F, Kappeler T, Kaljurand K, Schneider G, Klenner M, Clematide S, Hess M, von Allmen JM, Parisot P, Romacker M, et al.: OntoGene in BioCreative II. Genome Biol 2008, 9(Suppl 2):S13. 10.1186\/gb-2008-9-s2-s13","journal-title":"Genome Biol"},{"issue":"3","key":"4796_CR48","doi-asserted-by":"publisher","first-page":"472","DOI":"10.1109\/TCBB.2010.50","volume":"7","author":"F Rinaldi","year":"2010","unstructured":"Rinaldi F, Schneider G, Kaljurand K, Clematide S, Vachon T, Romacker M: OntoGene in BioCreative II.5. IEEE\/ACM Trans Comput Biol Bioinform 2010, 7(3):472\u2013480.","journal-title":"IEEE\/ACM Trans Comput Biol Bioinform"},{"key":"4796_CR49","first-page":"55","volume-title":"Proceedings of the BioCreative III workshop","author":"S Bhattacharya","year":"2010","unstructured":"Bhattacharya S, Sehgal AK, Srinivasan P: Cross-species Gene Normalization at the University of Iowa. In Proceedings of the BioCreative III workshop. Bethesda, MD, USA; 2010:55\u201359."},{"key":"4796_CR50","first-page":"119","volume-title":"Proceedings of the BioCreative III Workshop","author":"S Matos","year":"2010","unstructured":"Matos S, Campos D, Oliveira JL: Vector-space models and terminologies in gene normalization and document classification. In Proceedings of the BioCreative III Workshop. Bethesda, MD, USA; 2010:119\u2013124."},{"key":"4796_CR51","first-page":"33","volume-title":"Proceedings of the 12th Conference of the European Chapter of the Association for Computational Linguistics","author":"E Agirre","year":"2009","unstructured":"Agirre E, Soroa A: Personalizing PageRank for word sense disambiguation. In Proceedings of the 12th Conference of the European Chapter of the Association for Computational Linguistics. Athens, Greece: Association for Computational Linguistics; 2009:33\u201341."},{"key":"4796_CR52","volume-title":"Proceedings of the 11th international conference on World Wide Web","author":"TH Haveliwala","year":"2002","unstructured":"Haveliwala TH: Topic-sensitive PageRank. In Proceedings of the 11th international conference on World Wide Web. Honolulu, Hawaii, USA: ACM; 2002."},{"key":"4796_CR53","volume-title":"Proceedings of the seventh international conference on World Wide Web 7","author":"S Brin","year":"1998","unstructured":"Brin S, Page L: The anatomy of a large-scale hypertextual Web search engine. In Proceedings of the seventh international conference on World Wide Web 7. Brisbane, Australia: Elsevier Science Publishers B. V.; 1998."},{"issue":"1","key":"4796_CR54","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"M Ashburner","year":"2000","unstructured":"Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al.: Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25(1):25\u201329. 10.1038\/75556","journal-title":"Nat Genet"},{"key":"4796_CR55","doi-asserted-by":"publisher","first-page":"baq023","DOI":"10.1093\/database\/baq023","volume":"2010","author":"B Turner","year":"2010","unstructured":"Turner B, Razick S, Turinsky AL, Vlasblom J, Crowdy EK, Cho E, Morrison K, Donaldson IM, Wodak SJ: iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence. Database (Oxford) 2010, 2010: baq023.","journal-title":"Database (Oxford)"},{"key":"4796_CR56","unstructured":"HomoloGene[\n                    http:\/\/www.ncbi.nlm.nih.gov\/homologene\n                    \n                  ]"},{"issue":"5","key":"4796_CR57","doi-asserted-by":"publisher","first-page":"497","DOI":"10.1197\/jamia.M2085","volume":"13","author":"H Liu","year":"2006","unstructured":"Liu H, Hu ZZ, Torii M, Wu C, Friedman C: Quantitative assessment of dictionary-based protein named entity tagging. J Am Med Inform Assoc 2006, 13(5):497\u2013507. 10.1197\/jamia.M2085","journal-title":"J Am Med Inform Assoc"},{"key":"4796_CR58","first-page":"451","volume-title":"Pac Symp Biocomput","author":"AS Schwartz","year":"2003","unstructured":"Schwartz AS, Hearst MA: A simple algorithm for identifying abbreviation definitions in biomedical text. Pac Symp Biocomput 2003, 451\u2013462."}],"container-title":["BMC Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-S8-S2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2105-12-S8-S2\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2105-12-S8-S2.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,1,23]],"date-time":"2019-01-23T10:38:37Z","timestamp":1548239917000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/1471-2105-12-S8-S2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,10,3]]},"references-count":58,"journal-issue":{"issue":"S8","published-print":{"date-parts":[[2011,12]]}},"alternative-id":["4796"],"URL":"https:\/\/doi.org\/10.1186\/1471-2105-12-s8-s2","relation":{},"ISSN":["1471-2105"],"issn-type":[{"value":"1471-2105","type":"electronic"}],"subject":[],"published":{"date-parts":[[2011,10,3]]},"article-number":"S2"}}