{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,9]],"date-time":"2026-04-09T10:28:50Z","timestamp":1775730530967,"version":"3.50.1"},"reference-count":148,"publisher":"Springer Science and Business Media LLC","issue":"1","license":[{"start":{"date-parts":[[2006,1,31]],"date-time":"2006-01-31T00:00:00Z","timestamp":1138665600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/2.0"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":["BMC Genomics"],"published-print":{"date-parts":[[2006,12]]},"abstract":"<jats:title>Abstract<\/jats:title>\n          <jats:sec>\n            <jats:title>Background<\/jats:title>\n            <jats:p>Kinesins, a superfamily of molecular motors, use microtubules as tracks and transport diverse cellular cargoes. All kinesins contain a highly conserved ~350 amino acid motor domain. Previous analysis of the completed genome sequence of one flowering plant (Arabidopsis) has resulted in identification of 61 kinesins. The recent completion of genome sequencing of several photosynthetic and non-photosynthetic eukaryotes that belong to divergent lineages offers a unique opportunity to conduct a comprehensive comparative analysis of kinesins in plant and non-plant systems and infer their evolutionary relationships.<\/jats:p>\n          <\/jats:sec>\n          <jats:sec>\n            <jats:title>Results<\/jats:title>\n            <jats:p>We used the kinesin motor domain to identify kinesins in the completed genome sequences of 19 species, including 13 newly sequenced genomes. Among the newly analyzed genomes, six represent photosynthetic eukaryotes. A total of 529 kinesins was used to perform comprehensive analysis of kinesins and to construct gene trees using the Bayesian and parsimony approaches. The previously recognized 14 families of kinesins are resolved as distinct lineages in our inferred gene tree. At least three of the 14 kinesin families are not represented in flowering plants. <jats:italic>Chlamydomonas<\/jats:italic>, a green alga that is part of the lineage that includes land plants, has at least nine of the 14 known kinesin families. Seven of ten families present in flowering plants are represented in <jats:italic>Chlamydomonas<\/jats:italic>, indicating that these families were retained in both the flowering-plant and green algae lineages.<\/jats:p>\n          <\/jats:sec>\n          <jats:sec>\n            <jats:title>Conclusion<\/jats:title>\n            <jats:p>The increase in the number of kinesins in flowering plants is due to vast expansion of the Kinesin-14 and Kinesin-7 families. The Kinesin-14 family, which typically contains a C-terminal motor, has many plant kinesins that have the motor domain at the N terminus, in the middle, or the C terminus. Several domains in kinesins are present exclusively either in plant or animal lineages. Addition of novel domains to kinesins in lineage-specific groups contributed to the functional diversification of kinesins. Results from our gene-tree analyses indicate that there was tremendous lineage-specific duplication and diversification of kinesins in eukaryotes. Since the functions of only a few plant kinesins are reported in the literature, this comprehensive comparative analysis will be useful in designing functional studies with photosynthetic eukaryotes.<\/jats:p>\n          <\/jats:sec>","DOI":"10.1186\/1471-2164-7-18","type":"journal-article","created":{"date-parts":[[2006,2,4]],"date-time":"2006-02-04T19:16:14Z","timestamp":1139080574000},"update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":104,"title":["Comprehensive comparative analysis of kinesins in photosynthetic eukaryotes"],"prefix":"10.1186","volume":"7","author":[{"given":"Dale N","family":"Richardson","sequence":"first","affiliation":[]},{"given":"Mark P","family":"Simmons","sequence":"additional","affiliation":[]},{"given":"Anireddy SN","family":"Reddy","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2006,1,31]]},"reference":[{"key":"401_CR1","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1016\/S0074-7696(01)04004-9","volume":"204","author":"ASN Reddy","year":"2001","unstructured":"Reddy ASN: Molecular motors and their functions in plants. Int Rev Cytol & Cell Bio. 2001, 204: 97-178.","journal-title":"Int Rev Cytol & Cell Bio"},{"key":"401_CR2","doi-asserted-by":"publisher","first-page":"467","DOI":"10.1016\/S0092-8674(03)00111-9","volume":"112","author":"RD Vale","year":"2003","unstructured":"Vale RD: The molecular motor toolbox for intracellular transport. Cell. 2003, 112: 467-480. 10.1016\/S0092-8674(03)00111-9.","journal-title":"Cell"},{"key":"401_CR3","doi-asserted-by":"publisher","first-page":"519","DOI":"10.1126\/science.279.5350.519","volume":"279","author":"N Hirokawa","year":"1998","unstructured":"Hirokawa N: Kinesin and dynein superfamily proteins and the mechanism of organelle transport. Science. 1998, 279: 519-526. 10.1126\/science.279.5350.519.","journal-title":"Science"},{"key":"401_CR4","doi-asserted-by":"publisher","first-page":"527","DOI":"10.1126\/science.279.5350.527","volume":"279","author":"V Mermall","year":"1998","unstructured":"Mermall V, Post PL, Mooseker MS: Unconventional myosins in cell movement, membrane traffic, and signal transduction. Science. 1998, 279: 527-533. 10.1126\/science.279.5350.527.","journal-title":"Science"},{"key":"401_CR5","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1146\/annurev.cellbio.15.1.141","volume":"15","author":"LSB Goldstein","year":"1999","unstructured":"Goldstein LSB, Philip AV: The road less traveled: Emerging principles of kinesin motor utilization. Annu Rev Cell Dev Biol. 1999, 15: 141-183. 10.1146\/annurev.cellbio.15.1.141.","journal-title":"Annu Rev Cell Dev Biol"},{"key":"401_CR6","doi-asserted-by":"publisher","first-page":"7004","DOI":"10.1073\/pnas.111145398","volume":"98","author":"H Miki","year":"2001","unstructured":"Miki H, Setou M, Kaneshiro K, Hirokawa N: All kinesin superfamily protein, KIF, genes in mouse and human. Proc Natl Acad Sci USA. 2001, 98: 7004-7011. 10.1073\/pnas.111145398.","journal-title":"Proc Natl Acad Sci USA"},{"key":"401_CR7","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1016\/S0092-8674(85)80099-4","volume":"42","author":"RD Vale","year":"1985","unstructured":"Vale RD, Reese TS, Sheetz MP: Identification of a novel force-generating protein, kinesin, involved in microtubule-based motility. Cell. 1985, 42: 39-50. 10.1016\/S0092-8674(85)80099-4.","journal-title":"Cell"},{"key":"401_CR8","doi-asserted-by":"publisher","first-page":"745","DOI":"10.1146\/annurev.cellbio.13.1.745","volume":"13","author":"RD Vale","year":"1997","unstructured":"Vale RD, Fletterick RJ: The design plan of kinesin motors. Annu Rev Cell Dev Biol. 1997, 13: 745-777. 10.1146\/annurev.cellbio.13.1.745.","journal-title":"Annu Rev Cell Dev Biol"},{"key":"401_CR9","volume-title":"Trends Cell Biol","author":"H Miki","year":"2005","unstructured":"Miki H, Okada Y, Hirokawa N: Analysis of the kinesin superfamily: insights into structure and function. Trends Cell Biol. 2005"},{"key":"401_CR10","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1002\/cm.970230104","volume":"23","author":"PL Leopold","year":"1992","unstructured":"Leopold PL, McDowall AW, Pfister KK, Bloom GS, Brady ST: Association of kinesin with characterized membrane-bounded organelles. Cell Motil Cytoskeleton. 1992, 23: 19-33. 10.1002\/cm.970230104.","journal-title":"Cell Motil Cytoskeleton"},{"key":"401_CR11","doi-asserted-by":"publisher","first-page":"540","DOI":"10.1038\/359540a0","volume":"359","author":"KE Sawin","year":"1992","unstructured":"Sawin KE, LeGuellec K, Philippe M, Mitchison TJ: Mitotic spindle organization by a plus-end-directed microtubule motor. Nature. 1992, 359: 540-543. 10.1038\/359540a0.","journal-title":"Nature"},{"key":"401_CR12","doi-asserted-by":"publisher","first-page":"1735","DOI":"10.1073\/pnas.93.5.1735","volume":"93","author":"NR Barton","year":"1996","unstructured":"Barton NR, Goldstein LSB: Going mobile: Microtubule motors and chromosome segregation. Proc Natl Acad Sci USA. 1996, 93: 1735-1742. 10.1073\/pnas.93.5.1735.","journal-title":"Proc Natl Acad Sci USA"},{"key":"401_CR13","doi-asserted-by":"publisher","first-page":"318","DOI":"10.1002\/(SICI)1097-0169(1997)38:4<318::AID-CM2>3.0.CO;2-#","volume":"38","author":"JH Carson","year":"1997","unstructured":"Carson JH, Worboys K, Ainger K, Barbarese E: Translocation of myelin basic protein mRNA in oligodendrocytes requires microtubules and kinesin. Cell Motil Cytoskeleton. 1997, 38: 318-328. 10.1002\/(SICI)1097-0169(1997)38:4<318::AID-CM2>3.0.CO;2-#.","journal-title":"Cell Motil Cytoskeleton"},{"key":"401_CR14","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1083\/jcb.200408113","volume":"167","author":"CJ Lawrence","year":"2004","unstructured":"Lawrence CJ, Dawe RK, Christie KR, Cleveland DW, Dawson SC, Endow SA, Goldstein LS, Goodson HV, Hirokawa N, Howard J, Malmberg RL, Mclntosh JR, Miki H, Mitchison TJ, Okada Y, Reddy AS, Saxton WM, Schliwa M, Scholey JM, Vale RD, Walczak CE, Wordeman L: A standardized kinesin nomenclature. J Cell Biol. 2004, 167: 19-22. 10.1083\/jcb.200408113.","journal-title":"J Cell Biol"},{"key":"401_CR15","doi-asserted-by":"publisher","first-page":"1159","DOI":"10.1016\/0092-8674(90)90412-8","volume":"63","author":"HB McDonald","year":"1990","unstructured":"McDonald HB, Steward RJ, Goldstein LSB: The kinesin-like ncd protein of Drosophila is a minus end-directed microtubule motor. Cell. 1990, 63: 1159-1165. 10.1016\/0092-8674(90)90412-8.","journal-title":"Cell"},{"key":"401_CR16","doi-asserted-by":"publisher","first-page":"780","DOI":"10.1038\/347780a0","volume":"347","author":"RA Walker","year":"1990","unstructured":"Walker RA, Salmon ED, Endow SA: The Drosophila claret segregation protein is a minus-end directed motor molecule. Nature. 1990, 347: 780-782. 10.1038\/347780a0.","journal-title":"Nature"},{"key":"401_CR17","doi-asserted-by":"crossref","first-page":"2708","DOI":"10.1002\/j.1460-2075.1994.tb06561.x","volume":"13","author":"SA Endow","year":"1994","unstructured":"Endow SA, Kang SJ, Satterwhite LL, Rose MD, Skeen VP, Salmon ED: Yeast Kar3 is a minus-end microtubule motor protein that destabilizes microtubules preferentially at the minus ends. EMBO J. 1994, 13: 2708-2713.","journal-title":"EMBO J"},{"key":"401_CR18","first-page":"433","volume-title":"Molecular Motors","author":"ASN Reddy","year":"2003","unstructured":"Reddy ASN: Molecular motors in plant cells. Molecular Motors. Edited by: Schliwa M. 2003, Weinheim: Wiley-VCH, 433-469."},{"key":"401_CR19","doi-asserted-by":"publisher","first-page":"3877","DOI":"10.1104\/pp.104.052621","volume":"136","author":"YR Lee","year":"2004","unstructured":"Lee YR, Liu B: Cytoskeletal motors in Arabidopsis. Sixty-one kinesins and seventeen myosins. Plant Physiol. 2004, 136: 3877-3883. 10.1104\/pp.104.052621.","journal-title":"Plant Physiol"},{"key":"401_CR20","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1105\/tpc.8.1.119","volume":"8","author":"B Liu","year":"1996","unstructured":"Liu B, Cyr RJ, Palevitz BA: A kinesin-like protein, KatAp, in the cells of Arabidopsis and other plants. Plant Cell. 1996, 8: 119-132. 10.1105\/tpc.8.1.119.","journal-title":"Plant Cell"},{"key":"401_CR21","doi-asserted-by":"publisher","first-page":"797","DOI":"10.1016\/S0960-9822(00)00564-9","volume":"10","author":"Y-RJ Lee","year":"2000","unstructured":"Lee Y-RJ, Liu B: Identification of a phragmoplast-associated kinesin-related protein in higher plants. Curr Biol. 2000, 10: 797-800. 10.1016\/S0960-9822(00)00564-9.","journal-title":"Curr Biol"},{"key":"401_CR22","doi-asserted-by":"publisher","first-page":"2427","DOI":"10.1105\/tpc.13.11.2427","volume":"13","author":"YR Lee","year":"2001","unstructured":"Lee YR, Giang HM, Liu B: A novel plant kinesin-related protein specifically associates with the phragmoplast organelles. Plant Cell. 2001, 13: 2427-2439. 10.1105\/tpc.13.11.2427.","journal-title":"Plant Cell"},{"key":"401_CR23","doi-asserted-by":"publisher","first-page":"2401","DOI":"10.1242\/dev.00114","volume":"129","author":"C Chen","year":"2002","unstructured":"Chen C, Marcus A, Li W, Hu Y, Calzada JP, Grossniklaus U, Cyr RJ, Ma H: The Arabidopsis ATK1 gene is required for spindle morphogenesis in male meiosis. Development. 2002, 129: 2401-2409. 10.1242\/dev.00114.","journal-title":"Development"},{"key":"401_CR24","doi-asserted-by":"publisher","first-page":"1717","DOI":"10.1091\/mbc.E02-09-0586","volume":"14","author":"AI Marcus","year":"2003","unstructured":"Marcus AI, Li W, Ma H, Cyr RJ: A kinesin mutant with an atypical bipolar spindle undergoes normal mitosis. Mol Biol Cell. 2003, 14: 1717-1726. 10.1091\/mbc.E02-09-0586.","journal-title":"Mol Biol Cell"},{"key":"401_CR25","doi-asserted-by":"publisher","first-page":"87","DOI":"10.1016\/S0092-8674(02)00691-8","volume":"109","author":"R Nishihama","year":"2002","unstructured":"Nishihama R, Soyano T, Ishikawa M, Araki S, Tanaka H, Asada T, Trie K, Ito M, Terada M, Banno H, Yamazaki Y, Machida Y: Expansion of the cell plate in plant cytokinesis requires a kinesin-like protein\/MAPKKK complex. Cell. 2002, 109: 87-99. 10.1016\/S0092-8674(02)00691-8.","journal-title":"Cell"},{"key":"401_CR26","doi-asserted-by":"publisher","first-page":"153","DOI":"10.1016\/S0960-9822(01)00655-8","volume":"12","author":"G Strompen","year":"2002","unstructured":"Strompen G, El Kasmi F, Richter S, Lukowitz W, Assaad FF, Jurgens G, Mayer U: The Arabidopsis HINKEL gene encodes a kinesin-related protein involved in cytokinesis and is expressed in a cell cycle-dependent manner. Curr Biol. 2002, 12: 153-158. 10.1016\/S0960-9822(01)00655-8.","journal-title":"Curr Biol"},{"key":"401_CR27","doi-asserted-by":"publisher","first-page":"229","DOI":"10.1046\/j.1365-313X.2003.01713.x","volume":"34","author":"CY Yang","year":"2003","unstructured":"Yang CY, Spielman M, Coles JP, Li Y, Ghelani S, Bourdon V, Brown RC, Lemmon BE, Scott RJ, Dickinson HG: TETRASPORE encodes a kinesin required for male meiotic cytokinesis in Arabidopsis. Plant j. 2003, 34: 229-240. 10.1046\/j.1365-313X.2003.01713.x.","journal-title":"Plant j"},{"key":"401_CR28","first-page":"1584","volume-title":"Mol Biol Cell","author":"JC Ambrose","year":"2005","unstructured":"Ambrose JC, Li W, Marcus A, Ma H, Cyr R: A Minus-End Directed Kinesin with +TIP Activity Is Involved in Spindle Morphogenesis. Mol Biol Cell. 2005, 1584-1592. 10.1091\/mbc.E04-10-0935."},{"key":"401_CR29","doi-asserted-by":"publisher","first-page":"1429","DOI":"10.1046\/j.1365-313x.1997.12061429.x","volume":"12","author":"J Bowser","year":"1997","unstructured":"Bowser J, Reddy AS: Localization of a kinesin-like calmodulin-binding protein in dividing cells of Arabidopsis and tobacco. Plant J. 1997, 12: 1429-1437. 10.1046\/j.1365-313x.1997.12061429.x.","journal-title":"Plant J"},{"key":"401_CR30","doi-asserted-by":"publisher","first-page":"6261","DOI":"10.1073\/pnas.94.12.6261","volume":"94","author":"DG Oppenheimer","year":"1997","unstructured":"Oppenheimer DG, Pollock MA, Vacik J, Szymanski DB, Ericson B, Feldmann K, Marks D: Essential role of a kinesin-like protein in Arabidopsis trichome morphogenesis. Proc Natl Acad Sci USA. 1997, 94: 6261-6266. 10.1073\/pnas.94.12.6261.","journal-title":"Proc Natl Acad Sci USA"},{"key":"401_CR31","doi-asserted-by":"publisher","first-page":"979","DOI":"10.1105\/tpc.12.6.979","volume":"12","author":"JW Voss","year":"2000","unstructured":"Voss JW, Safadi F, Reddy ASN, Hepler PK: The kinesin-like calmodulin binding protein is differentially involved in cell division. Plant Cell. 2000, 12: 979-990. 10.1105\/tpc.12.6.979.","journal-title":"Plant Cell"},{"key":"401_CR32","doi-asserted-by":"publisher","first-page":"503","DOI":"10.1016\/S1360-1385(00)01792-1","volume":"5","author":"ASN Reddy","year":"2000","unstructured":"Reddy ASN, Day IS: The role of the cytoskeleton and a molecular motor in trichome morphogenesis. Trends Plant Sci. 2000, 5: 503-505. 10.1016\/S1360-1385(00)01792-1.","journal-title":"Trends Plant Sci"},{"key":"401_CR33","doi-asserted-by":"publisher","first-page":"185","DOI":"10.1105\/tpc.016600","volume":"16","author":"VS Reddy","year":"2004","unstructured":"Reddy VS, Day IS, Thomas T, Reddy AS: KIC, a novel Ca2+ binding protein with one EF-hand motif, interacts with a microtubule motor protein and regulates trichome morphogenesis. Plant Cell. 2004, 16: 185-200. 10.1105\/tpc.016600.","journal-title":"Plant Cell"},{"key":"401_CR34","doi-asserted-by":"publisher","first-page":"811","DOI":"10.1091\/mbc.E04-05-0400","volume":"16","author":"L Lu","year":"2005","unstructured":"Lu L, Lee YR, Pan R, Maloof JN, Liu B: An internal motor Kinesin is associated with the Golgi apparatus and plays a role in trichome morphogenesis in Arabidopsis. Mol Biol Cell. 2005, 16: 811-823. 10.1091\/mbc.E04-05-0400.","journal-title":"Mol Biol Cell"},{"key":"401_CR35","doi-asserted-by":"publisher","first-page":"3101","DOI":"10.1105\/tpc.005801","volume":"14","author":"R Zhong","year":"2002","unstructured":"Zhong R, Burk DH, MWH , Ye ZH: A kinesin-like protein is essential for oriented deposition of cellulose microfibrils and cell wall strength. Plant Cell. 2002, 14: 3101-3117. 10.1105\/tpc.005801.","journal-title":"Plant Cell"},{"key":"401_CR36","doi-asserted-by":"publisher","first-page":"724","DOI":"10.1104\/pp.127.3.724","volume":"127","author":"R Itoh","year":"2001","unstructured":"Itoh R, Fujiwara M, Yoshida S: Kinesin-related proteins with a mitochondrial targeting signal. Plant Physiol. 2001, 127: 724-726. 10.1104\/pp.127.3.724.","journal-title":"Plant Physiol"},{"key":"401_CR37","doi-asserted-by":"publisher","first-page":"1817","DOI":"10.1105\/tpc.003681","volume":"14","author":"LJ Kong","year":"2002","unstructured":"Kong LJ, Hanley-Bowdoin L: A geminivirus replication protein interacts with a protein kinase and a motor protein that display different expression patterns during plant development and infection. Plant Cell. 2002, 14: 1817-1832. 10.1105\/tpc.003681.","journal-title":"Plant Cell"},{"key":"401_CR38","doi-asserted-by":"publisher","first-page":"3945","DOI":"10.1104\/pp.104.052340","volume":"136","author":"ML Preuss","year":"2004","unstructured":"Preuss ML, Kovar DR, Lee YR, Staiger CJ, Delmer DP, Liu B: A plant-specific kinesin binds to actin microfilaments and interacts with cortical microtubules in cotton fibers. Plant Physiol. 2004, 136: 3945-3955. 10.1104\/pp.104.052340.","journal-title":"Plant Physiol"},{"key":"401_CR39","doi-asserted-by":"publisher","first-page":"322","DOI":"10.1073\/pnas.94.1.322","volume":"94","author":"H Song","year":"1997","unstructured":"Song H, Golovkin M, Reddy ASN, Endow SA: In vitro motility of AtKCBP, a calmodulin-binding kinesin-like protein of Arabidopsis. Proc Natl Acad Sci USA. 1997, 94: 322-327. 10.1073\/pnas.94.1.322.","journal-title":"Proc Natl Acad Sci USA"},{"key":"401_CR40","doi-asserted-by":"publisher","first-page":"144","DOI":"10.1002\/cm.10045","volume":"52","author":"AI Marcus","year":"2002","unstructured":"Marcus AI, Ambrose JC, Blickley L, Hancock WO, Cyr RJ: Arabidopsis thaliana protein, ATK1, is a minus-end directed kinesin that exhibits non-processive movement. Cell Motil Cytoskeleton. 2002, 52: 144-150. 10.1002\/cm.10045.","journal-title":"Cell Motil Cytoskeleton"},{"key":"401_CR41","doi-asserted-by":"crossref","first-page":"2249","DOI":"10.1242\/jcs.107.8.2249","volume":"107","author":"T Asada","year":"1994","unstructured":"Asada T, Shibaoka H: Isolation of polypeptides with microtubule-translocating activity from phragmoplasts of tobacco BY-2 cells. J Cell Sci. 1994, 107: 2249-2257.","journal-title":"J Cell Sci"},{"key":"401_CR42","doi-asserted-by":"crossref","first-page":"42","DOI":"10.1007\/s00239-001-0016-y","volume":"54","author":"CJ Lawrence","year":"2002","unstructured":"Lawrence CJ, Malmberg RL, Muszynski MG, Dawe RK: Maximum likelihood methods reveal conservation of function among closely related kinesin families. J Mol Evol. 2002, 54: 42-53.","journal-title":"J Mol Evol"},{"key":"401_CR43","doi-asserted-by":"publisher","first-page":"2.1","DOI":"10.1186\/1471-2164-2-2","volume":"2","author":"ASN Reddy","year":"2001","unstructured":"Reddy ASN, Day IS: Kinesins in the Arabidopsis genome: A comparative analysis among eukaryotes. BMC Genomics. 2001, 2: 2.1-2.13. 10.1186\/1471-2164-2-2.","journal-title":"BMC Genomics"},{"key":"401_CR44","doi-asserted-by":"publisher","first-page":"457","DOI":"10.1016\/S0959-437X(05)80192-3","volume":"1","author":"ML Sogin","year":"1991","unstructured":"Sogin ML: Early evolution and the origin of eukaryotes. Curr Opin Genet Dev. 1991, 1: 457-463. 10.1016\/S0959-437X(05)80192-3.","journal-title":"Curr Opin Genet Dev"},{"key":"401_CR45","first-page":"65","volume":"11","author":"T Hashimoto","year":"1994","unstructured":"Hashimoto T, Nakamura Y, Nakamura F, Shirakura T, Adachi J, Goto N, Okamoto K, Hasegawa M: Protein phylogeny gives a robust estimation for early divergences of eukaryotes: phylogenetic place of a mitochondria-lacking protozoan, Giardia lamblia. Mol Biol Evol. 1994, 11: 65-71.","journal-title":"Mol Biol Evol"},{"key":"401_CR46","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1038\/nature03481","volume":"435","author":"L Eichinger","year":"2005","unstructured":"Eichinger L, Pachebat JA, Glockner G, Rajandream MA, Sucgang R, Berriman M, Song J, Olsen R, Szafranski K, Xu Q, Tunggal B, Kummerfeld S, Madera M, Konfortov BA, Rivero F, Bankier AT, Lehmann R, Hamlin N, Davies R, Gaudet P, Fey P, Pilcher K, Chen G, Saunders D, Sodergren E, Davis P, Kerhornou A, Nie X, Hall N, Anjard C, Hemphill L, Bason N, Farbrother P, Desany B, Just E, Morio T, Rost R, Churcher C, Cooper J, Haydock S, van Driessche N, Cronin A, Goodhead I, Muzny D, Mourier T, Pain A, Lu M, Harper D, Lindsay R, Hauser H, James K, Quiles M, Madan Babu M, Saito T, Buchrieser C, Wardroper A, Felder M, Thangavelu M, Johnson D, Knights A, Loulseged H, Mungall K, Oliver K, Price C, Quail MA, Urushihara H, Hernandez J, Rabbinowitsch E, Steffen D, Sanders M, Ma J, Kohara Y, Sharp S, Simmonds M, Spiegler S, Tivey A, Sugano S, White B, Walker D, Woodward J, Winckler T, Tanaka Y, Shaulsky G, Schleicher M, Weinstock G, Rosenthal A, Cox EC, Chisholm RL, Gibbs R, Loomis WF, Platzer M, Kay RR, Williams J, Dear PH, Noegel AA, Barrell B, Kuspa A: The genome of the social amoeba Dictyostelium discoideum. Nature. 2005, 435: 43-57. 10.1038\/nature03481.","journal-title":"Nature"},{"key":"401_CR47","doi-asserted-by":"publisher","first-page":"409","DOI":"10.1093\/molbev\/msi023","volume":"22","author":"N Arisue","year":"2005","unstructured":"Arisue N, Hasegawa M, Hashimoto T: Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data. Mol Biol Evol. 2005, 22: 409-420. 10.1093\/molbev\/msi023.","journal-title":"Mol Biol Evol"},{"key":"401_CR48","doi-asserted-by":"publisher","first-page":"1113","DOI":"10.1038\/nature03949","volume":"436","author":"TA Richards","year":"2005","unstructured":"Richards TA, Cavalier-Smith T: Myosin domain evolution and the primary divergence of eukaryotes. Nature. 2005, 436: 1113-1118. 10.1038\/nature03949.","journal-title":"Nature"},{"key":"401_CR49","doi-asserted-by":"publisher","first-page":"474","DOI":"10.1038\/sj.cr.7290316","volume":"15","author":"D He","year":"2005","unstructured":"He D, Wen JF, Chen WQ, Lu SQ, Xin de D: Identification, characteristic and phylogenetic analysis of type II DNA topoisomerase gene in Giardia lamblia. Cell Res. 2005, 15: 474-482. 10.1038\/sj.cr.7290316.","journal-title":"Cell Res"},{"key":"401_CR50","doi-asserted-by":"publisher","first-page":"1703","DOI":"10.1126\/science.1085544","volume":"300","author":"SL Baldauf","year":"2003","unstructured":"Baldauf SL: The deep roots of eukaryotes. Science. 2003, 300: 1703-1706. 10.1126\/science.1085544.","journal-title":"Science"},{"key":"401_CR51","doi-asserted-by":"publisher","first-page":"354","DOI":"10.1126\/science.1095964","volume":"305","author":"PG Falkowski","year":"2004","unstructured":"Falkowski PG, Katz ME, Knoll AM, Quigg A, Raven JA, Schofield O, Taylor FJR: The evolution of modern eukaryotic phytoplankton. Science. 2004, 305: 354-360. 10.1126\/science.1095964.","journal-title":"Science"},{"key":"401_CR52","doi-asserted-by":"crossref","first-page":"1524","DOI":"10.1093\/oxfordjournals.molbev.a004215","volume":"19","author":"N Iwabe","year":"2002","unstructured":"Iwabe N, Miyata T: Kinesin-related genes from diplomonad, sponge, amphioxus, and cyclostomes: divergence pattern of kinesin family and evolution of giardial membrane-bounded organella. Mol Biol Evol. 2002, 19: 1524-1533.","journal-title":"Mol Biol Evol"},{"key":"401_CR53","doi-asserted-by":"publisher","first-page":"66","DOI":"10.1186\/1471-2105-6-66","volume":"6","author":"AR Subramanian","year":"2005","unstructured":"Subramanian AR, Weyer-Menkhoff J, Kaufmann M, Morgenstern B: DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment. BMC Bioinformatics. 2005, 6: 66-10.1186\/1471-2105-6-66.","journal-title":"BMC Bioinformatics"},{"key":"401_CR54","doi-asserted-by":"publisher","first-page":"W33","DOI":"10.1093\/nar\/gnh029","volume":"32","author":"B Morgenstern","year":"2004","unstructured":"Morgenstern B: DIALIGN: multiple DNA and protein sequence alignment at BiBiServ. Nucleic Acids Res. 2004, 32: W33-36. 10.1093\/nar\/gnh029.","journal-title":"Nucleic Acids Res"},{"key":"401_CR55","doi-asserted-by":"publisher","first-page":"4876","DOI":"10.1093\/nar\/25.24.4876","volume":"25","author":"JD Thompson","year":"1997","unstructured":"Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG: The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25: 4876-4882. 10.1093\/nar\/25.24.4876.","journal-title":"Nucleic Acids Res"},{"key":"401_CR56","doi-asserted-by":"publisher","first-page":"290","DOI":"10.1093\/bioinformatics\/14.3.290","volume":"14","author":"B Morgenstern","year":"1998","unstructured":"Morgenstern B, Freeh K, Dress A, Werner T: DIALIGN: finding local similarities by multiple sequence alignment. Bioinformatics. 1998, 14: 290-294. 10.1093\/bioinformatics\/14.3.290.","journal-title":"Bioinformatics"},{"key":"401_CR57","first-page":"378","volume":"8","author":"JA Lake","year":"1991","unstructured":"Lake JA: The order of sequence alignment can bias the selection of tree topology. Mol Biol Evol. 1991, 8: 378-385.","journal-title":"Mol Biol Evol"},{"key":"401_CR58","doi-asserted-by":"publisher","first-page":"2682","DOI":"10.1093\/nar\/27.13.2682","volume":"27","author":"JD Thompson","year":"1999","unstructured":"Thompson JD, Plewniak F, Poch O: A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res. 1999, 27: 2682-2690. 10.1093\/nar\/27.13.2682.","journal-title":"Nucleic Acids Res"},{"key":"401_CR59","doi-asserted-by":"publisher","first-page":"126","DOI":"10.1016\/S0014-5793(02)03189-7","volume":"529","author":"T Lassmann","year":"2002","unstructured":"Lassmann T, Sonnhammer EL: Quality assessment of multiple alignment programs. FEBS Lett. 2002, 529: 126-130. 10.1016\/S0014-5793(02)03189-7.","journal-title":"FEBS Lett"},{"key":"401_CR60","doi-asserted-by":"crossref","first-page":"7","DOI":"10.2307\/2992432","volume":"38","author":"AG Kluge","year":"1989","unstructured":"Kluge AG: A concern for evidence and a phylogenetic hypothesis for relationships among Epicrates (Boidae, Serpentes). Systematic Zoology. 1989, 38: 7-25.","journal-title":"Systematic Zoology"},{"key":"401_CR61","doi-asserted-by":"publisher","first-page":"221","DOI":"10.1111\/j.1096-0031.1996.tb00010.x","volume":"12","author":"KC Nixon","year":"1996","unstructured":"Nixon KC, Carpenter JM: On simultaneous analysis. Cladistics. 1996, 12: 221-242. 10.1111\/j.1096-0031.1996.tb00010.x.","journal-title":"Cladistics"},{"key":"401_CR62","doi-asserted-by":"publisher","first-page":"454","DOI":"10.1080\/106351501300318049","volume":"50","author":"MP Simmons","year":"2001","unstructured":"Simmons MP, Ochoterena H, Carr TG: Incorporation, relative homoplasy, and effect of gap characters in sequence-based phylogenetic analyses. Syst Biol. 2001, 50: 454-462. 10.1080\/106351501300318049.","journal-title":"Syst Biol"},{"key":"401_CR63","doi-asserted-by":"crossref","first-page":"401","DOI":"10.2307\/2412923","volume":"27","author":"J Felsenstein","year":"1978","unstructured":"Felsenstein J: Cases in which parsimony or compatibility methods will be postively misleading. Systematic Zool. 1978, 27: 401-410.","journal-title":"Systematic Zool"},{"key":"401_CR64","doi-asserted-by":"publisher","first-page":"9","DOI":"10.1111\/j.1096-0031.1999.tb00391.x","volume":"15","author":"ME Siddall","year":"1999","unstructured":"Siddall ME, Whiting MF: Long-branch abstractions. Cladistics. 1999, 15: 9-24. 10.1111\/j.1096-0031.1999.tb00391.x.","journal-title":"Cladistics"},{"key":"401_CR65","doi-asserted-by":"publisher","first-page":"813","DOI":"10.1038\/nrm952","volume":"3","author":"JL Rosenbaum","year":"2002","unstructured":"Rosenbaum JL, Witman GB: Intraflagellar transport. Nat Rev Mol Cell Biol. 2002, 3: 813-825. 10.1038\/nrm952.","journal-title":"Nat Rev Mol Cell Biol"},{"key":"401_CR66","doi-asserted-by":"publisher","first-page":"24.21","DOI":"10.1186\/gb-2001-2-7-research0024","volume":"2","author":"ASN Reddy","year":"2001","unstructured":"Reddy ASN, Day IS: Analysis of the myosins encoded in the recently completed Arabidopsis thaliana genome sequence. Genome Biol. 2001, 2: 24.21-24.17. 10.1186\/gb-2001-2-7-research0024.","journal-title":"Genome Biol"},{"key":"401_CR67","doi-asserted-by":"publisher","first-page":"825","DOI":"10.1083\/jcb.125.4.825","volume":"125","author":"SH Lillie","year":"1994","unstructured":"Lillie SH, Brown SS: Immunofluorescence localization of the unconventional myosin, Myo2p, and the putative kinesin-related protein, Smylp, to the same regions of polarized growth in Saccharomyces cerevisiae. J Cell Biol. 1994, 125: 825-842. 10.1083\/jcb.125.4.825.","journal-title":"J Cell Biol"},{"key":"401_CR68","doi-asserted-by":"publisher","first-page":"873","DOI":"10.1083\/jcb.140.4.873","volume":"140","author":"SH Lillie","year":"1998","unstructured":"Lillie SH, Brown SS: Smylp, a kinesin-related protein that does not require microtubules. J Cell Biol. 1998, 140: 873-883. 10.1083\/jcb.140.4.873.","journal-title":"J Cell Biol"},{"key":"401_CR69","doi-asserted-by":"publisher","first-page":"381","DOI":"10.1006\/bojl.2000.0380","volume":"133","author":"DE Soltis","year":"2000","unstructured":"Soltis DE, PS S, Chase MW, Mort ME, Albach DC, Zanis M, Savolainen V, Hahn WH, Hoot SB, Fay MF, Axtell M, Swensen SM, Nixon KC, JC F: Angiosperm phylogeny inferred from a combined data set of 18S rDNA, rbcL, and atpB sequences. Botanical J Linnean Soc. 2000, 133: 381-461. 10.1006\/bojl.2000.0380.","journal-title":"Botanical J Linnean Soc"},{"key":"401_CR70","doi-asserted-by":"publisher","first-page":"1813","DOI":"10.1093\/molbev\/msh203","volume":"21","author":"T Nishiyama","year":"2004","unstructured":"Nishiyama T, Wolf PG, Kugita M, Sinclair RB, Sugita M, Sugiura C, Wakasugi T, Yamada K, Yoshinaga K, Yamaguchi K, Ueda K, Hasebe M: Chloroplast phylogeny indicates that bryophytes are monophyletic. Mol Biol Evol. 2004, 21: 1813-1819. 10.1093\/molbev\/msh203.","journal-title":"Mol Biol Evol"},{"key":"401_CR71","doi-asserted-by":"publisher","first-page":"1772","DOI":"10.1093\/molbev\/msi172","volume":"22","author":"TR Bachvaroff","year":"2005","unstructured":"Bachvaroff TR, Sanchez Puerta MV, Delwiche CF: Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages. Mol Biol Evol. 2005, 22: 1772-1782. 10.1093\/molbev\/msi172.","journal-title":"Mol Biol Evol"},{"key":"401_CR72","first-page":"461","volume-title":"Enclyopedia of Molecular Cell Biology and Molecular Medicine","author":"ASN Reddy","year":"2005","unstructured":"Reddy ASN: Molecular motors in plant cells. Enclyopedia of Molecular Cell Biology and Molecular Medicine. Edited by: Meyers RA. 2005, Weinheim: Wiley-VCH, 8: 461-494."},{"key":"401_CR73","doi-asserted-by":"publisher","first-page":"1417","DOI":"10.1104\/pp.104.044818","volume":"135","author":"M Vanstraelen","year":"2004","unstructured":"Vanstraelen M, Torres Acosta JA, De Veylder L, Inze D, Geelen D: A plant-specific subclass of C-terminal kinesins contains a conserved a-type cyclin-dependent kinase site implicated in folding and dimerization. Plant Physiol. 2004, 135: 1417-1429. 10.1104\/pp.104.044818.","journal-title":"Plant Physiol"},{"key":"401_CR74","doi-asserted-by":"publisher","first-page":"362","DOI":"10.1034\/j.1600-0854.2001.25020508.x","volume":"2","author":"CJ Lawrence","year":"2001","unstructured":"Lawrence CJ, Morris NR, Meagher RB, Dawe RK: Dyneins have run their course in plant lineage. Traffic. 2001, 2: 362-363. 10.1034\/j.1600-0854.2001.25020508.x.","journal-title":"Traffic"},{"key":"401_CR75","doi-asserted-by":"publisher","first-page":"930","DOI":"10.1034\/j.1600-0854.2002.31208.x","volume":"3","author":"SM King","year":"2002","unstructured":"King SM: Dyneins motor on in plants. Traffic. 2002, 3: 930-931. 10.1034\/j.1600-0854.2002.31208.x.","journal-title":"Traffic"},{"key":"401_CR76","doi-asserted-by":"publisher","first-page":"45","DOI":"10.1016\/j.pbi.2004.11.005","volume":"8","author":"JY Kim","year":"2005","unstructured":"Kim JY: Regulation of short-distance transport of RNA and protein. Curr Opin Plant Biol. 2005, 8: 45-52. 10.1016\/j.pbi.2004.11.005.","journal-title":"Curr Opin Plant Biol"},{"key":"401_CR77","doi-asserted-by":"publisher","first-page":"1199","DOI":"10.1111\/j.1365-2443.2004.00798.x","volume":"9","author":"H Tanaka","year":"2004","unstructured":"Tanaka H, Ishikawa M, Kitamura S, Takahashi Y, Soyano T, Machida C, Machida Y: The AtNACK1\/HINKEL and STUD\/TETRASPORE\/AtNACK2 genes, which encode functionally redundant kinesins, are essential for cytokinesis in Arabidopsis. Genes Cells. 2004, 9: 1199-1211. 10.1111\/j.1365-2443.2004.00798.x.","journal-title":"Genes Cells"},{"key":"401_CR78","doi-asserted-by":"publisher","first-page":"653","DOI":"10.1038\/nature02398","volume":"428","author":"M Matsuzaki","year":"2004","unstructured":"Matsuzaki M, Misumi O, Shin IT, Maruyama S, Takahara M, Miyagishima SY, Mori T, Nishida K, Yagisawa F, Yoshida Y, Nishimura Y, Nakao S, Kobayashi T, Momoyama Y, Higashiyama T, Minoda A, Sano M, Nomoto H, Oishi K, Hayashi H, Ohta F, Nishizaka S, Haga S, Miura S, Morishita T, Kabeya Y, Terasawa K, Suzuki Y, Ishii Y, Asakawa S, Takano H, Ohta N, Kuroiwa H, Tanaka K, Shimizu N, Sugano S, Sato N, Nozaki H, Ogasawara N, Kohara Y, Kuroiwa T: Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature. 2004, 428: 653-657. 10.1038\/nature02398.","journal-title":"Nature"},{"key":"401_CR79","doi-asserted-by":"publisher","first-page":"1019","DOI":"10.1016\/0092-8674(90)90350-N","volume":"60","author":"AP Enos","year":"1990","unstructured":"Enos AP, Morris NR: Mutation of a gene that encodes a kinesin-like protein blocks nuclear division in A. nidulans. Cell. 1990, 60: 1019-1027. 10.1016\/0092-8674(90)90350-N.","journal-title":"Cell"},{"key":"401_CR80","doi-asserted-by":"crossref","first-page":"179","DOI":"10.1242\/jcs.110.2.179","volume":"110","author":"T Asada","year":"1997","unstructured":"Asada T, Kuriyama R, Shibaoka H: TKRP125, a kinesin-related protein involved in the centrosome-independent organization of the cytokinetic apparatus in tobacco BY-2 cells. J Cell Sci. 1997, 110: 179-189.","journal-title":"J Cell Sci"},{"key":"401_CR81","doi-asserted-by":"publisher","first-page":"69","DOI":"10.1016\/S0092-8674(00)80960-5","volume":"96","author":"A Desai","year":"1999","unstructured":"Desai A, Verma S, Mitchison TJ, Walczak CE: Kin I kinesins are microtubule-destabilizing enzymes. Cell. 1999, 96: 69-78. 10.1016\/S0092-8674(00)80960-5.","journal-title":"Cell"},{"key":"401_CR82","doi-asserted-by":"publisher","first-page":"229","DOI":"10.1016\/S0092-8674(03)00522-1","volume":"114","author":"N Homma","year":"2003","unstructured":"Homma N, Takei Y, Tanaka Y, Nakata T, Terada S, Kikkawa M, Noda Y, Hirokawa N: Kinesin superfamily protein 2A (KIF2A) functions in suppression of collateral branch extension. Cell. 2003, 114: 229-239. 10.1016\/S0092-8674(03)00522-1.","journal-title":"Cell"},{"key":"401_CR83","unstructured":"Simple Modular Architecture Research Tool."},{"key":"401_CR84","doi-asserted-by":"publisher","first-page":"1139","DOI":"10.1046\/j.1365-313X.1997.12051139.x","volume":"12","author":"SB Narasimhulu","year":"1997","unstructured":"Narasimhulu SB, Kao Y-L, Reddy ASN: Interaction of Arabidopsis kinesin-like calmodulin-binding protein with tubulin subunits: Modulation by Ca2+-calmodulin. Plant J. 1997, 12: 1139-1149. 10.1046\/j.1365-313X.1997.12051139.x.","journal-title":"Plant J"},{"key":"401_CR85","doi-asserted-by":"publisher","first-page":"325","DOI":"10.1038\/nature02834","volume":"431","author":"KL Weber","year":"2004","unstructured":"Weber KL, Sokac AM, Berg JS, Cheney RE, Bement WM: A microtubule-binding myosin required for nuclear anchoring and spindle assembly. Nature. 2004, 431: 325-329. 10.1038\/nature02834.","journal-title":"Nature"},{"key":"401_CR86","doi-asserted-by":"publisher","first-page":"1419","DOI":"10.1016\/S0969-2126(98)00141-5","volume":"6","author":"S Banuelos","year":"1998","unstructured":"Banuelos S, Saraste M, Carugo KD: Structural comparisons of calponin homology domains: implications for actin binding. Structure. 1998, 6: 1419-1431. 10.1016\/S0969-2126(98)00141-5.","journal-title":"Structure"},{"key":"401_CR87","doi-asserted-by":"publisher","first-page":"117","DOI":"10.1042\/0264-6021:3440117","volume":"344","author":"BD Leinweber","year":"1999","unstructured":"Leinweber BD, Leavis PC, Grabarek Z, Wang CL, Morgan KG: Extracellular regulated kinase (ERK) interaction with actin and the calponin homology (CH) domain of actin-binding proteins. Biochem J. 1999, 344: 117-123. 10.1042\/0264-6021:3440117.","journal-title":"Biochem J"},{"key":"401_CR88","doi-asserted-by":"publisher","first-page":"8443","DOI":"10.1073\/pnas.93.16.8443","volume":"93","author":"H Yamazaki","year":"1996","unstructured":"Yamazaki H, Nakata T, Okada Y, Hirokawa N: Cloning and characterization of KAP3: a novel kinesin superfamily-associated protein of KIF3A\/3B. Proc Natl Acad Sci USA. 1996, 93: 8443-8448. 10.1073\/pnas.93.16.8443.","journal-title":"Proc Natl Acad Sci USA"},{"key":"401_CR89","doi-asserted-by":"crossref","first-page":"457","DOI":"10.1002\/j.1460-2075.1996.tb00378.x","volume":"15","author":"N Tokai","year":"1996","unstructured":"Tokai N, Fujimoto-Nishiyama A, Toyoshima Y, Yonemure S, Tsukita S, Inoue J, Yamamoto T: Kid, a novel kinesin-like DNA binding protein, is localized to chromosomes and the mitotic spindle. EMBO J. 1996, 15: 457-467.","journal-title":"EMBO J"},{"key":"401_CR90","first-page":"9903","volume-title":"Proc Natl Acad Sci USA","author":"AH Patterson","year":"2004","unstructured":"Patterson AH, Bowers JE, Chapman BA: Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proc Natl Acad Sci USA. 2004, 9903-9908. 10.1073\/pnas.0307901101."},{"key":"401_CR91","doi-asserted-by":"publisher","first-page":"1523","DOI":"10.1105\/tpc.12.9.1523","volume":"12","author":"AH Paterson","year":"2000","unstructured":"Paterson AH, Bowers JE, Burow MD, Draye X, Elsik CG, Jiang CX, Katsar CS, Lan TH, Lin YR, Ming R, Wright RJ: Comparative genomics of plant chromosomes. Plant Cell. 2000, 12: 1523-1540. 10.1105\/tpc.12.9.1523.","journal-title":"Plant Cell"},{"key":"401_CR92","doi-asserted-by":"publisher","first-page":"796","DOI":"10.1038\/35048692","volume":"408","author":"TAG Initiative","year":"2000","unstructured":"Initiative TAG: Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature. 2000, 408: 796-815. 10.1038\/35048692.","journal-title":"Nature"},{"key":"401_CR93","doi-asserted-by":"publisher","first-page":"e38","DOI":"10.1371\/journal.pbio.0030038","volume":"3","author":"J Yu","year":"2005","unstructured":"Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S, Zeng C, Zhang J, Zhang Y, Li R, Xu Z, Li S, Li X, Zheng H, Cong L, Lin L, Yin J, Geng J, Li G, Shi J, Liu J, Lv H, Li J, Wang J, Deng Y, Ran L, Shi X, Wang X, Wu Q, Li C, Ren X, Wang J, Wang X, Li D, Liu D, Zhang X, Ji Z, Zhao W, Sun Y, Zhang Z, Bao J, Han Y, Dong L, Ji J, Chen P, Wu S, Liu J, Xiao Y, Bu D, Tan J, Yang L, Ye C, Zhang J, Xu J, Zhou Y, Yu Y, Zhang B, Zhuang S, Wei H, Liu B, Lei M, Yu H, Li Y, Xu H, Wei S, He X, Fang L, Zhang Z, Zhang Y, Huang X, Su Z, Tong W, Li J, Tong Z, Li S, Ye J, Wang L, Fang L, Lei T, Chen C, Chen H, Xu Z, Li H, Huang H, Zhang F, Xu H, Li N, Zhao C, Li S, Dong L, Huang Y, Li L, Xi Y, Qi Q, Li W, Zhang B, Hu W, Zhang Y, Tian X, Jiao Y, Liang X, Jin J, Gao L, Zheng W, Hao B, Liu S, Wang W, Yuan L, Cao M, McDermott J, Samudrala R, Wang J, Wong GK, Yang H: The Genomes of Oryza sativa: a history of duplications. PLoS Biol. 2005, 3: e38-10.1371\/journal.pbio.0030038.","journal-title":"PLoS Biol"},{"key":"401_CR94","doi-asserted-by":"publisher","first-page":"610","DOI":"10.1139\/g04-016","volume":"47","author":"R Guyot","year":"2004","unstructured":"Guyot R, Keller B: Ancestral genome duplication in rice. Genome. 2004, 47: 610-614. 10.1139\/g04-016.","journal-title":"Genome"},{"key":"401_CR95","doi-asserted-by":"publisher","first-page":"117","DOI":"10.1016\/S0378-1119(99)00370-4","volume":"239","author":"TW Gong","year":"1999","unstructured":"Gong TW, Winnicki RS, Kohrman DC, Lomax MI: A novel mouse kinesin of the UNC-104\/KIF1 subfamily encoded by the Kif1b gene. Gene. 1999, 239: 117-127. 10.1016\/S0378-1119(99)00370-4.","journal-title":"Gene"},{"key":"401_CR96","doi-asserted-by":"publisher","first-page":"587","DOI":"10.1016\/S0092-8674(01)00363-4","volume":"105","author":"C Zhao","year":"2001","unstructured":"Zhao C, Takita J, Tanaka Y, Setou M, Nakagawa T, Takeda S, Yang HW, Terada S, Nakata T, Takei Y, Saito M, Tsuji S, Hayashi Y, Hirokawa N: Charcot-Marie-Tooth disease type 2A caused by mutation in a microtubule motor KIF1Bbeta. Cell. 2001, 105: 587-597. 10.1016\/S0092-8674(01)00363-4.","journal-title":"Cell"},{"key":"401_CR97","unstructured":"BLAST Plant Genomes. [http:\/\/www.ncbi.nlm.nih.gov\/BLAST\/Genome\/PlantBlast.shtml?10]"},{"key":"401_CR98","unstructured":"NCBI BLAST. [http:\/\/www.ncbi.nlm.nih.gov\/BLAST\/]"},{"key":"401_CR99","unstructured":"Bioverse. [http:\/\/bioverse.compbio.washington.edu\/]"},{"key":"401_CR100","unstructured":"Beijing Genomics Institute. [http:\/\/rise.genomics.org.cn]"},{"key":"401_CR101","doi-asserted-by":"publisher","first-page":"D377","DOI":"10.1093\/nar\/gkh085","volume":"32","author":"W Zhao","year":"2004","unstructured":"Zhao W, Wang J, He X, Huang X, Jiao Y, Dai M, Wei S, Fu J, Chen Y, Ren X, Zhang Y, Ni P, Zhang J, Li S, Wang J, Wong GK, Zhao H, Yu J, Yang H, Wang J: BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. Nucleic Acids Res. 2004, 32: D377-382. 10.1093\/nar\/gkh085.","journal-title":"Nucleic Acids Res"},{"key":"401_CR102","doi-asserted-by":"publisher","first-page":"847","DOI":"10.1093\/bioinformatics\/17.9.847","volume":"17","author":"EM Zdobnov","year":"2001","unstructured":"Zdobnov EM, Apweiler R: InterProScan \u2013 an integration platform for the signature-recognition methods in InterPro. Bioinformatics. 2001, 17: 847-848. 10.1093\/bioinformatics\/17.9.847.","journal-title":"Bioinformatics"},{"key":"401_CR103","unstructured":"The Arabidopsis Information Resource (TAIR). [http:\/\/www.arabidopsis.org]"},{"key":"401_CR104","unstructured":"The Joint Genome Institute Genome Portal. [http:\/\/genome.jgi-psf.org\/]"},{"key":"401_CR105","doi-asserted-by":"publisher","first-page":"368","DOI":"10.1007\/BF01734359","volume":"17","author":"J Felsenstein","year":"1981","unstructured":"Felsenstein J: Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol. 1981, 17: 368-376. 10.1007\/BF01734359.","journal-title":"J Mol Evol"},{"key":"401_CR106","unstructured":"Cyanidioschyzon merolae Genome Project. [http:\/\/merolae.biol.s.u-tokyo.ac.jp\/]"},{"key":"401_CR107","unstructured":"GiardiaDB. [http:\/\/gmod.mbl.edu\/perl\/site\/giardia?page=intro]"},{"key":"401_CR108","unstructured":"The Kinesin HomePage. [http:\/\/www.proweb.org\/kinesin\/]"},{"key":"401_CR109","unstructured":"NCBI Batch Entrez. [http:\/\/www.ncbi.nlm.nih.gov\/entrez\/batchentrez.cgi?db=Protein]"},{"key":"401_CR110","unstructured":"Celera Discovery System. [http:\/\/publication.celera.com\/humanpub\/index.jsp]"},{"key":"401_CR111","unstructured":"Flybase. [http:\/\/flybase.bio.indiana.edu\/]"},{"key":"401_CR112","unstructured":"Wormbase. [http:\/\/www.wormbase.org\/]"},{"key":"401_CR113","unstructured":"Dictybase. [http:\/\/www.dictybase.org\/]"},{"key":"401_CR114","unstructured":"PlasmoDB: The Plasmodium Genome Resource. [http:\/\/plasmodb.org\/PlasmoDB.shtml]"},{"key":"401_CR115","unstructured":"The Sanger Institute: The Leishmania major Genome Project. [http:\/\/www.sanger.ac.uk\/Projects\/L_major\/]"},{"key":"401_CR116","unstructured":"Saccharomyces Genome Database. [http:\/\/www.yeastgenome.org\/]"},{"key":"401_CR117","unstructured":"S. Pombe: GeneDB. [http:\/\/www.genedb.org\/genedb\/pombe\/index.jsp]"},{"key":"401_CR118","unstructured":"Interproscan. [http:\/\/www.ebi.ac.uk\/InterProScan\/]"},{"key":"401_CR119","doi-asserted-by":"publisher","first-page":"276","DOI":"10.1016\/S0168-9525(00)02024-2","volume":"16","author":"P Rice","year":"2000","unstructured":"Rice P, Longden I, Bleasby A: EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000, 16: 276-277. 10.1016\/S0168-9525(00)02024-2.","journal-title":"Trends Genet"},{"key":"401_CR120","doi-asserted-by":"publisher","first-page":"65","DOI":"10.2165\/00822942-200504010-00008","volume":"4","author":"K Muller","year":"2005","unstructured":"Muller K: SeqState: Primer Design and Sequence Statistics for Phylogenetic DNA Datasets. Appl Bioinformatics. 2005, 4: 65-69. 10.2165\/00822942-200504010-00008.","journal-title":"Appl Bioinformatics"},{"key":"401_CR121","doi-asserted-by":"publisher","first-page":"369","DOI":"10.1080\/10635159950173889","volume":"49","author":"MP Simmons","year":"2000","unstructured":"Simmons MP, Ochoterena H: Gaps as characters in sequence-based phylogenetic analyses. Syst Biol. 2000, 49: 369-381. 10.1080\/10635159950173889.","journal-title":"Syst Biol"},{"key":"401_CR122","doi-asserted-by":"publisher","first-page":"274","DOI":"10.1111\/j.1096-0031.2000.tb00283.x","volume":"16","author":"MP Simmons","year":"2000","unstructured":"Simmons MP: A fundamental problem with amino-acid-sequence characters for phylogenetic analyses. Cladistics. 2000, 16: 274-282. 10.1111\/j.1096-0031.2000.tb00283.x.","journal-title":"Cladistics"},{"key":"401_CR123","doi-asserted-by":"publisher","first-page":"200","DOI":"10.1111\/j.1096-0031.2002.tb00148.x","volume":"18","author":"MP Simmons","year":"2002","unstructured":"Simmons MP, Ochoterena H, Freudenstein JV: Conflict between amino acid and nucleotide characters. Cladistics. 2002, 18: 200-206. 10.1111\/j.1096-0031.2002.tb00148.x.","journal-title":"Cladistics"},{"key":"401_CR124","doi-asserted-by":"publisher","first-page":"354","DOI":"10.1111\/j.1096-0031.2002.tb00156.x","volume":"18","author":"MP Simmons","year":"2002","unstructured":"Simmons MP, Freudenstein JV: Artifacts of coding amino acids and other composite characters for phylogenetic analysis. Cladistics. 2002, 18: 354-365. 10.1111\/j.1096-0031.2002.tb00156.x.","journal-title":"Cladistics"},{"key":"401_CR125","doi-asserted-by":"publisher","first-page":"78","DOI":"10.1016\/S1055-7903(02)00202-6","volume":"24","author":"MP Simmons","year":"2002","unstructured":"Simmons MP, Ochoterena H, Freudenstein JV: Amino acid vs. nucleotide characters: challenging preconceived notions. Mol Phylogenet Evol. 2002, 24: 78-90. 10.1016\/S1055-7903(02)00202-6.","journal-title":"Mol Phylogenet Evol"},{"key":"401_CR126","doi-asserted-by":"crossref","first-page":"717","DOI":"10.1093\/oxfordjournals.molbev.a025811","volume":"14","author":"Z Yang","year":"1997","unstructured":"Yang Z, Rannala B: Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method. Mol Biol Evol. 1997, 14: 717-724.","journal-title":"Mol Biol Evol"},{"key":"401_CR127","volume-title":"PAUP*: Phylogenetic analysis using parsimony. (*and other methods)","author":"DL Swofford","year":"2001","unstructured":"Swofford DL: PAUP*: Phylogenetic analysis using parsimony. (*and other methods). 2001, Sunderland, MA: Sinauer Associates"},{"key":"401_CR128","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1111\/j.1096-0031.1996.tb00196.x","volume":"12","author":"JS Farris","year":"1996","unstructured":"Farris JS, Albert VA, Kallersjo M, Lipscomb D, Kluge AG: Parsimony jackknifing outperforms neighbor-joining. Cladistics. 1996, 12: 99-124. 10.1111\/j.1096-0031.1996.tb00196.x.","journal-title":"Cladistics"},{"key":"401_CR129","doi-asserted-by":"crossref","first-page":"783","DOI":"10.1111\/j.1558-5646.1985.tb00420.x","volume":"39","author":"J Felsenstein","year":"1985","unstructured":"Felsenstein J: Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 1985, 39: 783-791.","journal-title":"Evolution"},{"key":"401_CR130","doi-asserted-by":"publisher","first-page":"754","DOI":"10.1093\/bioinformatics\/17.8.754","volume":"17","author":"JP Huelsenbeck","year":"2001","unstructured":"Huelsenbeck JP, Ronquist F: MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 2001, 17: 754-755. 10.1093\/bioinformatics\/17.8.754.","journal-title":"Bioinformatics"},{"key":"401_CR131","volume-title":"MrBayes 3.1 manual","author":"F Ronquist","year":"2005","unstructured":"Ronquist F, Huelsenbeck JP, van der Mark P: MrBayes 3.1 manual. 2005, Downloaded 5\/17\/2005., [http:\/\/mrbaves.csit.fsu.edu\/manual.phd]"},{"key":"401_CR132","doi-asserted-by":"publisher","first-page":"581","DOI":"10.1016\/S0092-8240(97)00001-3","volume":"59","author":"C Tuffley","year":"1997","unstructured":"Tuffley C, Steel M: Links between maximum likelihood and maximum parsimony under a simple model of site substitution. Bull Math Biol. 1997, 59: 581-607. 10.1016\/S0092-8240(97)00001-3.","journal-title":"Bull Math Biol"},{"key":"401_CR133","doi-asserted-by":"publisher","first-page":"351","DOI":"10.1016\/j.ympev.2003.08.004","volume":"31","author":"MP Simmons","year":"2004","unstructured":"Simmons MP, Miya M: Efficiently resolving the basal clades of a phylogenetic tree using Bayesian and parsimony approaches: a case study using mitogenomic data from 100 higher teleost fishes. Mol Phylogenet Evol. 2004, 31: 351-362. 10.1016\/j.ympev.2003.08.004.","journal-title":"Mol Phylogenet Evol"},{"key":"401_CR134","doi-asserted-by":"publisher","first-page":"16138","DOI":"10.1073\/pnas.212646199","volume":"99","author":"Y Suzuki","year":"2002","unstructured":"Suzuki Y, Glazko GV, Nei M: Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proc Natl Acad Sci USA. 2002, 99: 16138-16143. 10.1073\/pnas.212646199.","journal-title":"Proc Natl Acad Sci USA"},{"key":"401_CR135","doi-asserted-by":"crossref","first-page":"477","DOI":"10.1080\/10635150390218213","volume":"52","author":"MP Cummings","year":"2003","unstructured":"Cummings MP, Handley SA, Myers DS, Reed DL, Rokas A, Winka K: Comparing bootstrap and posterior probability values in the four-taxon case. Syst Biol. 2003, 52: 477-487.","journal-title":"Syst Biol"},{"key":"401_CR136","doi-asserted-by":"publisher","first-page":"188","DOI":"10.1093\/molbev\/msh014","volume":"21","author":"MP Simmons","year":"2004","unstructured":"Simmons MP, Pickett KM, Miya M: How meaningful are Bayesian posterior probabilities?. Mol Biol Evol. 2004, 21: 188-199. 10.1093\/molbev\/msh014.","journal-title":"Mol Biol Evol"},{"key":"401_CR137","first-page":"148","volume-title":"Parsimony and Bayesian phylogenetics. Parsimony, phylogeny, and genomics","author":"PA Goloboff","year":"2005","unstructured":"Goloboff PA, Pol D: Parsimony and Bayesian phylogenetics. Parsimony, phylogeny, and genomics. Edited by: Albert VA. 2005, Oxford University Press, 148-159."},{"key":"401_CR138","doi-asserted-by":"crossref","first-page":"1875","DOI":"10.1242\/jcs.107.7.1875","volume":"107","author":"HV Goodson","year":"1994","unstructured":"Goodson HV, Kang SJ, Endow SA: Molecular phylogeny of the kinesin family of microtubule motor proteins. J Cell Sci. 1994, 107: 1875-1884.","journal-title":"J Cell Sci"},{"key":"401_CR139","doi-asserted-by":"crossref","first-page":"3681","DOI":"10.1242\/jcs.113.21.3681","volume":"113","author":"AJ Kim","year":"2000","unstructured":"Kim AJ, Endow SA: A kinesin family tree. J Cell Sci. 2000, 113: 3681-3682.","journal-title":"J Cell Sci"},{"key":"401_CR140","doi-asserted-by":"publisher","first-page":"413","DOI":"10.1111\/j.1096-0031.1993.tb00234.x","volume":"9","author":"KC Nixon","year":"1993","unstructured":"Nixon KC, Carpenter JM: On outgroups. Cladistics. 1993, 9: 413-426. 10.1111\/j.1096-0031.1993.tb00234.x.","journal-title":"Cladistics"},{"key":"401_CR141","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/S1087-1845(03)00022-7","volume":"39","author":"CL Schoch","year":"2003","unstructured":"Schoch CL, Aist JR, Yoder OC, Gillian Turgeon B: A complete inventory of fungal kinesins in representative filamentous ascomycetes. Fungal Genet Biol. 2003, 39: 1-15. 10.1016\/S1087-1845(03)00022-7.","journal-title":"Fungal Genet Biol"},{"key":"401_CR142","doi-asserted-by":"publisher","first-page":"1711","DOI":"10.1104\/pp.105.060913","volume":"138","author":"S Abdel-Ghany","year":"2005","unstructured":"Abdel-Ghany S, Day IS, Simmons M, grens P, Reddy ASN: Origin and evolution of kinesin-like calmodulin-binding protein. Plant Physiol. 2005, 138: 1711-1722. 10.1104\/pp.105.060913.","journal-title":"Plant Physiol"},{"key":"401_CR143","doi-asserted-by":"publisher","first-page":"786","DOI":"10.1111\/j.1471-8286.2004.00813.x","volume":"4","author":"J M\u00fcller","year":"2004","unstructured":"M\u00fcller J, M\u00fcller K: TreeGraph: automated drawing of complex tree figures using an extensible tree description format. Mol Ecol Notes. 2004, 4: 786-788. 10.1111\/j.1471-8286.2004.00813.x.","journal-title":"Mol Ecol Notes"},{"key":"401_CR144","unstructured":"TreeGraph. [http:\/\/www.botanik.uni-bonn.de\/system\/downloads\/TreeGraph\/]"},{"key":"401_CR145","unstructured":"KOME. [http:\/\/cdna01.dna.affrc.go.jp\/cDNA\/]"},{"key":"401_CR146","doi-asserted-by":"publisher","first-page":"F63","DOI":"10.1083\/jcb.150.2.F63","volume":"150","author":"LS Goldstein","year":"2000","unstructured":"Goldstein LS, Gunawardena S: Flying through the drosophila cytoskeletal genome. J Cell Biol. 2000, 150: F63-68. 10.1083\/jcb.150.2.F63.","journal-title":"J Cell Biol"},{"key":"401_CR147","doi-asserted-by":"publisher","first-page":"20","DOI":"10.1034\/j.1600-0854.2002.30104.x","volume":"3","author":"SS Siddiqui","year":"2002","unstructured":"Siddiqui SS: Metazoan Motor Models: Kinesin Superfamily inC. elegans. Traffic. 2002, 3: 20-28. 10.1034\/j.1600-0854.2002.30104.x.","journal-title":"Traffic"},{"key":"401_CR148","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1186\/1471-2164-4-47","volume":"4","author":"M Kollmar","year":"2003","unstructured":"Kollmar M, Glockner G: Identification and phylogenetic analysis of Dictyostelium discoideum kinesin proteins. BMC Genomics. 2003, 4: 47-10.1186\/1471-2164-4-47.","journal-title":"BMC Genomics"}],"container-title":["BMC Genomics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2164-7-18.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"http:\/\/link.springer.com\/article\/10.1186\/1471-2164-7-18\/fulltext.html","content-type":"text\/html","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1186\/1471-2164-7-18.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,9,1]],"date-time":"2021-09-01T01:34:53Z","timestamp":1630460093000},"score":1,"resource":{"primary":{"URL":"https:\/\/bmcgenomics.biomedcentral.com\/articles\/10.1186\/1471-2164-7-18"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006,1,31]]},"references-count":148,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2006,12]]}},"alternative-id":["401"],"URL":"https:\/\/doi.org\/10.1186\/1471-2164-7-18","relation":{},"ISSN":["1471-2164"],"issn-type":[{"value":"1471-2164","type":"electronic"}],"subject":[],"published":{"date-parts":[[2006,1,31]]},"assertion":[{"value":"1 September 2005","order":1,"name":"received","label":"Received","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"31 January 2006","order":2,"name":"accepted","label":"Accepted","group":{"name":"ArticleHistory","label":"Article History"}},{"value":"31 January 2006","order":3,"name":"first_online","label":"First Online","group":{"name":"ArticleHistory","label":"Article History"}}],"article-number":"18"}}