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With dye-swapping and replicated arrays, we found 904 genes\/ESTs that are differentially expressed. We validated the gene expression using real-time RT-PCR. We found that the expression patterns of these genes\/ESTs correctly classified the 12 patients into ovarian and nonovarian endometriosis. We identified gene clusters that are location-specific. In addition, we identified several biological themes using Expression Analysis Systematic Explorer. Finally, we identified 79 pathways with over 100 genes with known functions, which include oxidative stress, focal adhesion, Wnt signaling, and MAPK signaling. The identification of these genes and their associated pathways provides new insight. Our findings will stimulate future investigations on molecular genetic mechanisms underlying the pathogenesis of endometriosis.<\/jats:p>","DOI":"10.1210\/en.2005-0426","type":"journal-article","created":{"date-parts":[[2005,9,30]],"date-time":"2005-09-30T00:33:37Z","timestamp":1128040417000},"page":"232-246","source":"Crossref","is-referenced-by-count":175,"title":["Transcriptional Characterizations of Differences between Eutopic and Ectopic Endometrium"],"prefix":"10.1210","volume":"147","author":[{"given":"Yan","family":"Wu","sequence":"first","affiliation":[{"name":"Deparments of Pediatrics (Y.W., P.J., X.W., S.G., S.-W.G.), Medical College of Wisconsin, Milwaukee, Wisconsin 53226"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andre\u0301","family":"Kajdacsy-Balla","sequence":"first","affiliation":[{"name":"Department of Pathology (A.K.-B.), University of Illinois, Chicago, Illinois 60612"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Estil","family":"Strawn","sequence":"first","affiliation":[{"name":"Departments of Obstetrics and Gynecology (E.S., G.H.), Medical College of Wisconsin, Milwaukee, Wisconsin 53226"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zainab","family":"Basir","sequence":"first","affiliation":[{"name":"Departments of Pathology (Z.B.), Medical College of Wisconsin, Milwaukee, Wisconsin 53226"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gloria","family":"Halverson","sequence":"first","affiliation":[{"name":"Departments of Obstetrics and Gynecology (E.S., G.H.), Medical College of Wisconsin, Milwaukee, Wisconsin 53226"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Parthav","family":"Jailwala","sequence":"first","affiliation":[{"name":"Deparments of Pediatrics (Y.W., P.J., X.W., S.G., S.-W.G.), Medical College of Wisconsin, Milwaukee, Wisconsin 53226"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuedong","family":"Wang","sequence":"first","affiliation":[{"name":"Department of Statistics and Applied Probability (Y.W.), University of California, Santa Barbara, California 93106"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xujing","family":"Wang","sequence":"first","affiliation":[{"name":"Deparments of Pediatrics (Y.W., P.J., X.W., S.G., S.-W.G.), Medical College of Wisconsin, Milwaukee, Wisconsin 53226"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Soumitra","family":"Ghosh","sequence":"first","affiliation":[{"name":"Deparments of Pediatrics (Y.W., P.J., X.W., S.G., S.-W.G.), Medical College of Wisconsin, Milwaukee, Wisconsin 53226"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sun-Wei","family":"Guo","sequence":"first","affiliation":[{"name":"Deparments of Pediatrics (Y.W., P.J., X.W., S.G., S.-W.G.), Medical College of Wisconsin, Milwaukee, Wisconsin 53226"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"80","reference":[{"key":"2020071613041487100_R1","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1016\/S0889-8545(05)70302-8","article-title":"Epidemiology of endometriosis.","volume":"24","author":"Eskenazi","year":"1997","journal-title":"Obstet Gynecol Clin North Am"},{"key":"2020071613041487100_R2","first-page":"10","article-title":"How old is endometriosis? 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