{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,8]],"date-time":"2026-09-08T23:29:29Z","timestamp":1788910169321,"version":"build-2803163510"},"reference-count":116,"publisher":"The Company of Biologists","issue":"11","license":[{"start":{"date-parts":[[2025,12,2]],"date-time":"2025-12-02T00:00:00Z","timestamp":1764633600000},"content-version":"vor","delay-in-days":17,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0"}],"funder":[{"name":"Aberdeen Grant Academy"},{"name":"CB Dennis British Beekeepers\u2019 Research Trust"},{"DOI":"10.13039\/501100000882","name":"University of Aberdeen","doi-asserted-by":"crossref","id":[{"id":"10.13039\/501100000882","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025,11,15]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n                  <jats:p>Honey bees (Apis mellifera) provide important ecosystem services to both natural and human-managed environments, but are increasingly threatened by a variety of pathogens, the most common of which is deformed wing virus (DWV). DWV is known to replicate in the honey bee brain and has been documented as both improving and impairing olfactory learning and memory. We examined the transcriptomic response of the honey bee mushroom bodies \u2013 an area of the insect brain associated with higher cognitive functions \u2013 in bees with naturally occurring DWV infections, which varied in their ability to perform an associative learning task. RNA-sequencing analysis detected increased expression of genes involved in the immune response, including important antimicrobial peptides such as hymenoptaecin, apidaecin, and abaecin, and the downregulation of lysozyme, prophenoloxidase, and other genes associated with responses to a range of stressors. Additionally, gene ontology enrichment analysis revealed overrepresentation of key biological processes that form part of the immune response. We also noted significant differential expression of long non-coding RNAs (lncRNAs) presumed to be acting in a regulatory manner, and used these lncRNAs to construct gene regulatory networks. Strikingly, in contrast to previous studies on bees with artificially induced infections that have examined viral loads in the abdomen and non-specific areas of the brain, no correlation between DWV load in the mushroom bodies and cognitive function was noted. This highlights the complexity of host-pathogen interactions in honey bee neural tissues and the benefits of a spatially refined approach to brain transcriptomics in naturally occurring infections.<\/jats:p>","DOI":"10.1242\/bio.062204","type":"journal-article","created":{"date-parts":[[2025,10,27]],"date-time":"2025-10-27T10:29:37Z","timestamp":1761560977000},"source":"Crossref","is-referenced-by-count":2,"title":["Neurotranscriptomic profiling of deformed wing virus-infected honey bee foragers (\n                    <i>Apis mellifera<\/i>\n                    ) with different cognitive abilities"],"prefix":"10.1242","volume":"14","author":[{"ORCID":"https:\/\/orcid.org\/0009-0003-1924-0397","authenticated-orcid":false,"given":"Simon E.","family":"Loughran","sequence":"first","affiliation":[{"name":"School of Biological Sciences, University of Aberdeen 1 , AB24 3UL Aberdeen ,","place":["UK"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lauren","family":"Dingle","sequence":"additional","affiliation":[{"name":"School of Biological Sciences, University of Aberdeen 1 , AB24 3UL Aberdeen ,","place":["UK"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alan S.","family":"Bowman","sequence":"additional","affiliation":[{"name":"School of Biological Sciences, University of Aberdeen 1 , AB24 3UL Aberdeen ,","place":["UK"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9134-3994","authenticated-orcid":false,"given":"Fabio","family":"Manfredini","sequence":"additional","affiliation":[{"name":"School of Biological Sciences, University of Aberdeen 1 , AB24 3UL Aberdeen ,","place":["UK"]},{"name":"University of Milan 2 Department of Food, Environmental and Nutritional Sciences (DeFENS) , , 20133 Milan ,","place":["Italy"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"237","published-online":{"date-parts":[[2025,12,2]]},"reference":[{"key":"2025120203345222900_BIO062204C1","doi-asserted-by":"publisher","first-page":"10224","DOI":"10.1073\/pnas.96.18.10224","article-title":"Homeotic genes and the arthropod head: expression patterns of the labial, proboscipedia, and Deformed genes in crustaceans and insects","volume":"96","author":"Abzhanov","year":"1999","journal-title":"Proc. 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