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Understanding how vertebral segmentation and anteroposterior positional identity are patterned requires understanding vertebral column cellular and developmental biology. In this study, we characterized alignment of somites and vertebrae, distribution of individual sclerotome progeny along the anteroposterior axis and development of the axial skeleton in zebrafish. Our clonal analysis of zebrafish sclerotome shows that anterior and posterior somite domains are not lineage-restricted compartments with respect to distribution along the anteroposterior axis but support a \u2018leaky\u2019 resegmentation in development from somite to vertebral column. Alignment of somites with vertebrae suggests that the first two somites do not contribute to the vertebral column. Characterization of vertebral column development allowed examination of the relationship between vertebral formula and expression patterns of zebrafish Hox genes. Our results support co-localization of the anterior expression boundaries of zebrafish hoxc6 homologs with a cervical\/thoracic transition and also suggest Hox-independent patterning of regionally specific posterior vertebrae.<\/jats:p>","DOI":"10.1242\/dev.129.16.3851","type":"journal-article","created":{"date-parts":[[2021,4,26]],"date-time":"2021-04-26T05:01:15Z","timestamp":1619413275000},"page":"3851-3860","source":"Crossref","is-referenced-by-count":181,"title":["Segmental relationship between somites and vertebral column in zebrafish"],"prefix":"10.1242","volume":"129","author":[{"given":"Elizabeth M.","family":"Morin-Kensicki","sequence":"first","affiliation":[{"name":"Present address: Department of Genetics, Campus Box 7264, University of North Carolina, Chapel Hill, NC, 27599-7264, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ellie","family":"Melancon","sequence":"additional","affiliation":[{"name":"Institute of Neuroscience, 1254 University of Oregon, Eugene, OR 97403-1254, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Judith S.","family":"Eisen","sequence":"additional","affiliation":[{"name":"Present address: Department of Genetics, Campus Box 7264, University of North Carolina, Chapel Hill, NC, 27599-7264, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"237","reference":[{"key":"2021042604232756200_AHN-AND-GIBSON-1999","unstructured":"Ahn, D.-G. and Gibson, G. 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