{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,30]],"date-time":"2026-07-30T22:30:40Z","timestamp":1785450640234,"version":"3.56.0"},"reference-count":183,"publisher":"The Company of Biologists","issue":"22","license":[{"start":{"date-parts":[[2025,11,13]],"date-time":"2025-11-13T00:00:00Z","timestamp":1762992000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"crossref","award":["5T32GM088129-10"],"award-info":[{"award-number":["5T32GM088129-10"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"crossref","award":["1R01HL159159"],"award-info":[{"award-number":["1R01HL159159"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"crossref","award":["T32HL007284"],"award-info":[{"award-number":["T32HL007284"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100004917","name":"Cancer Prevention and Research Institute of Texas","doi-asserted-by":"crossref","award":["RP200402"],"award-info":[{"award-number":["RP200402"]}],"id":[{"id":"10.13039\/100004917","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100018088","name":"School of Medicine, University of Virginia","doi-asserted-by":"crossref","id":[{"id":"10.13039\/100018088","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100008457","name":"University of Virginia","doi-asserted-by":"crossref","id":[{"id":"10.13039\/100008457","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025,11,15]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n                  <jats:p>Here, we present MultiSite Assembly of Gateway Induced Clones (MAGIC), which leverages Gateway-based recombinatorial cloning technology for rapid, modular assembly of plasmids to facilitate transgenesis in cells and vertebrate animal models. The MAGIC collection of plasmids spans a range of in vitro and in vivo uses, from tools for optically and chemically tunable gene expression, to simultaneous expression of microRNAs and fluorescent reporters, to a suite of distinct subcellular compartmental fluorescent reporters, to Cre and Dre recombinase-dependent gene expression. MAGIC system components are compatible with existing MultiSite Gateway Tol2 systems currently used in zebrafish and mammalian lentiviral and adenoviral Destination vectors, allowing rapid cross-species experimentation. The kit also includes novel vectors for stable transgene integration into host genomes in vitro or in vivo when used with piggyBac transposase, I-Sce meganuclease or Tol2 transposase. Collectively, the MAGIC system facilitates transgenesis in cultured mammalian cells, mouse, chick and zebrafish embryos, enabling the rapid generation of innovative DNA constructs for biological research due to a shared, common plasmid platform.<\/jats:p>","DOI":"10.1242\/dev.204308","type":"journal-article","created":{"date-parts":[[2025,11,13]],"date-time":"2025-11-13T11:57:11Z","timestamp":1763035031000},"source":"Crossref","is-referenced-by-count":1,"title":["MultiSite Assembly of Gateway Induced Clones (MAGIC): a flexible cloning toolbox for use in vertebrate model systems"],"prefix":"10.1242","volume":"152","author":[{"suffix":"III","given":"William B.","family":"Gillespie","sequence":"first","affiliation":[{"name":"University of Virginia School of Medicine 1 Department of Cell Biology , , Charlottesville, VA 22903 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuwen","family":"Zhang","sequence":"additional","affiliation":[{"name":"University of Virginia School of Medicine 1 Department of Cell Biology , , Charlottesville, VA 22903 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Oscar E.","family":"Ruiz","sequence":"additional","affiliation":[{"name":"Baylor College of Medicine 2 Department of Integrative Physiology , , Houston, TX 77030 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"suffix":"III","given":"Juan","family":"Cerda","sequence":"additional","affiliation":[{"name":"Baylor College of Medicine 2 Department of Integrative Physiology , , Houston, TX 77030 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Joshua","family":"Ortiz-Guzman","sequence":"additional","affiliation":[{"name":"Baylor College of Medicine 3 Department of Molecular and Human Genetics , , Houston, TX 77030,","place":["USA"]},{"name":"Jan and Dan Duncan Neurological Research Institute, Texas Children's Hospital 4 , Houston, TX 77030,","place":["USA"]},{"name":"Baylor College of Medicine 5 Department of Neuroscience , , Houston, TX 77030,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michelle","family":"Sherman","sequence":"additional","affiliation":[{"name":"University of Virginia School of Medicine 1 Department of Cell Biology , , Charlottesville, VA 22903 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Williamson D.","family":"Turner","sequence":"additional","affiliation":[{"name":"Baylor College of Medicine 2 Department of Integrative Physiology , , Houston, TX 77030 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gabrielle","family":"Largoza","sequence":"additional","affiliation":[{"name":"University of Virginia School of Medicine 1 Department of Cell Biology , , Charlottesville, VA 22903 ,","place":["USA"]},{"name":"Baylor College of Medicine 2 Department of Integrative Physiology , , Houston, TX 77030 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lili E.","family":"Mosser","sequence":"additional","affiliation":[{"name":"University of Virginia School of Medicine 1 Department of Cell Biology , , Charlottesville, VA 22903 ,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Esther","family":"Fujimoto","sequence":"additional","affiliation":[{"name":"University of Utah 6 Department of Human Genetics , , Salt Lake City, UT 84112,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chi-Bin","family":"Chien","sequence":"additional","affiliation":[{"name":"University of Utah 6 Department of Human Genetics , , Salt Lake City, UT 84112,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kristen M.","family":"Kwan","sequence":"additional","affiliation":[{"name":"University of Utah 6 Department of Human Genetics , , Salt Lake City, UT 84112,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Benjamin R.","family":"Arenkiel","sequence":"additional","affiliation":[{"name":"Baylor College of Medicine 3 Department of Molecular and Human Genetics , , Houston, TX 77030,","place":["USA"]},{"name":"Jan and Dan Duncan Neurological Research Institute, Texas Children's Hospital 4 , Houston, TX 77030,","place":["USA"]},{"name":"Baylor College of Medicine 5 Department of Neuroscience , , Houston, TX 77030,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4634-8830","authenticated-orcid":false,"given":"W. Patrick","family":"Devine","sequence":"additional","affiliation":[{"name":"University of California San Francisco 7 Department of Pathology , , San Francisco, CA 94115,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3225-2937","authenticated-orcid":false,"given":"Joshua D.","family":"Wythe","sequence":"additional","affiliation":[{"name":"University of Virginia School of Medicine 1 Department of Cell Biology , , Charlottesville, VA 22903 ,","place":["USA"]},{"name":"Baylor College of Medicine 2 Department of Integrative Physiology , , Houston, TX 77030 ,","place":["USA"]},{"name":"University of Virginia School of Medicine 8 Department of Neuroscience , , Charlottesville, VA 22903,","place":["USA"]},{"name":"Brain, Immunology, and Glia (BIG) Center, University of Virginia School of Medicine 9 , Charlottesville, VA 22903,","place":["USA"]},{"name":"Robert M. Berne Cardiovascular Research Center, University of Virginia School of Medicine 10 , Charlottesville, VA 22903,","place":["USA"]},{"name":"University of Virginia Comprehensive Cancer Center, University of Virginia School of Medicine 11 , Charlottesville, VA 22903,","place":["USA"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"237","published-online":{"date-parts":[[2025,11,13]]},"reference":[{"key":"2025111306570327700_DEV204308C1","doi-asserted-by":"publisher","first-page":"817","DOI":"10.1002\/jgm.566","article-title":"Second-generation tetracycline-regulatable promoter: repositioned tet operator elements optimize transactivator synergy while shorter minimal promoter offers tight basal leakiness","volume":"6","author":"Agha-Mohammadi","year":"2004","journal-title":"J. Gene Med."},{"key":"2025111306570327700_DEV204308C2","doi-asserted-by":"publisher","first-page":"508","DOI":"10.1242\/dmm.003087","article-title":"Dre recombinase, like Cre, is a highly efficient site-specific recombinase in E. coli, mammalian cells and mice","volume":"2","author":"Anastassiadis","year":"2009","journal-title":"Dis. Model. Mech."},{"key":"2025111306570327700_DEV204308C3","doi-asserted-by":"publisher","first-page":"648","DOI":"10.1038\/s41592-023-02085-6","article-title":"StayGold variants for molecular fusion and membrane-targeting applications","volume":"21","author":"Ando","year":"2024","journal-title":"Nat. Methods"},{"key":"2025111306570327700_DEV204308C4","doi-asserted-by":"publisher","first-page":"67","DOI":"10.3109\/10409238.2010.546389","article-title":"Bacterial phytochromes: more than meets the light","volume":"46","author":"Auldridge","year":"2011","journal-title":"Crit. Rev. Biochem. Mol. Biol."},{"key":"2025111306570327700_DEV204308C5","doi-asserted-by":"publisher","first-page":"281","DOI":"10.1016\/S0092-8674(04)00045-5","article-title":"MicroRNAs: genomics, biogenesis, mechanism, and function","volume":"116","author":"Bartel","year":"2004","journal-title":"Cell"},{"key":"2025111306570327700_DEV204308C6","doi-asserted-by":"publisher","first-page":"399","DOI":"10.1186\/1471-2164-8-399","article-title":"The full-ORF clone resource of the German cDNA Consortium","volume":"8","author":"Bechtel","year":"2007","journal-title":"BMC Genomics"},{"key":"2025111306570327700_DEV204308C7","doi-asserted-by":"publisher","first-page":"443","DOI":"10.1002\/dvg.22385","article-title":"503unc, a small and muscle-specific zebrafish promoter","volume":"51","author":"Berger","year":"2013","journal-title":"Genesis"},{"key":"2025111306570327700_DEV204308C8","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1038\/nmeth.4074","article-title":"mScarlet: a bright monomeric red fluorescent protein for cellular imaging","volume":"14","author":"Bindels","year":"2017","journal-title":"Nat. Methods"},{"key":"2025111306570327700_DEV204308C9","doi-asserted-by":"publisher","first-page":"384","DOI":"10.1101\/gad.233577.113","article-title":"Restricted expression of cdc25a in the tailbud is essential for formation of the zebrafish posterior body","volume":"28","author":"Bouldin","year":"2014","journal-title":"Genes Dev."},{"key":"2025111306570327700_DEV204308C10","doi-asserted-by":"publisher","first-page":"321","DOI":"10.1186\/1471-2164-9-321","article-title":"The ORFeome of Staphylococcus aureus v 1.1","volume":"9","author":"Brandner","year":"2008","journal-title":"BMC Genomics"},{"key":"2025111306570327700_DEV204308C11","doi-asserted-by":"publisher","first-page":"135","DOI":"10.1002\/dvg.20275","article-title":"Pan-myocardial expression of Cre recombinase throughout mouse development","volume":"45","author":"Breckenridge","year":"2007","journal-title":"Genesis"},{"key":"2025111306570327700_DEV204308C12","doi-asserted-by":"publisher","first-page":"355","DOI":"10.1073\/pnas.96.2.355","article-title":"Adenovirus-mediated regulable target gene expression in vivo","volume":"96","author":"Burcin","year":"1999","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111306570327700_DEV204308C13","doi-asserted-by":"publisher","first-page":"e50","DOI":"10.1038\/mtna.2012.12","article-title":"A hyperactive transposase promotes persistent gene transfer of a piggyBac DNA transposon","volume":"1","author":"Burnight","year":"2012","journal-title":"Mol. Ther. Nucleic Acids"},{"key":"2025111306570327700_DEV204308C14","doi-asserted-by":"publisher","first-page":"e51270","DOI":"10.1371\/journal.pone.0051270","article-title":"Two types of Tet-On transgenic lines for doxycycline-inducible gene expression in zebrafish rod photoreceptors and a Gateway-based tet-on toolkit","volume":"7","author":"Campbell","year":"2012","journal-title":"PLoS ONE"},{"key":"2025111306570327700_DEV204308C15","doi-asserted-by":"publisher","first-page":"e6529","DOI":"10.1371\/journal.pone.0006529","article-title":"A versatile viral system for expression and depletion of proteins in mammalian cells","volume":"4","author":"Campeau","year":"2009","journal-title":"PLoS ONE"},{"key":"2025111306570327700_DEV204308C16","doi-asserted-by":"publisher","first-page":"e3000343","DOI":"10.1371\/journal.pbio.3000343","article-title":"FishNET: An automated relational database for zebrafish colony management","volume":"17","author":"Cantu Gutierrez","year":"2019","journal-title":"PLoS Biol."},{"key":"2025111306570327700_DEV204308C17","doi-asserted-by":"publisher","first-page":"932","DOI":"10.1093\/neuonc\/noaa297","article-title":"Identification of diverse tumor endothelial cell populations in malignant glioma","volume":"23","author":"Carlson","year":"2021","journal-title":"Neuro Oncol."},{"key":"2025111306570327700_DEV204308C18","doi-asserted-by":"publisher","first-page":"4248","DOI":"10.1128\/MCB.9.10.4248","article-title":"Efficiency of utilization of the simian virus 40 late polyadenylation site: effects of upstream sequences","volume":"9","author":"Carswell","year":"1989","journal-title":"Mol. Cell. Biol."},{"key":"2025111306570327700_DEV204308C19","doi-asserted-by":"publisher","first-page":"156","DOI":"10.1016\/0042-6822(89)90117-7","article-title":"Transposon mutagenesis of baculoviruses: analysis of Trichoplusia ni transposon IFP2 insertions within the FP-locus of nuclear polyhedrosis viruses","volume":"172","author":"Cary","year":"1989","journal-title":"Virology"},{"key":"2025111306570327700_DEV204308C20","doi-asserted-by":"publisher","first-page":"172","DOI":"10.1016\/j.jneumeth.2012.03.016","article-title":"A method for stable transgenesis of radial glia lineage in rat neocortex by piggyBac mediated transposition","volume":"207","author":"Chen","year":"2012","journal-title":"J. Neurosci. Methods"},{"key":"2025111306570327700_DEV204308C21","doi-asserted-by":"publisher","first-page":"2111","DOI":"10.1101\/gr.2512204","article-title":"Concerted assembly and cloning of multiple DNA segments using in vitro site-specific recombination: functional analysis of multi-segment expression clones","volume":"14","author":"Cheo","year":"2004","journal-title":"Genome Res."},{"key":"2025111306570327700_DEV204308C22","doi-asserted-by":"publisher","first-page":"572","DOI":"10.1038\/nmeth.2888","article-title":"Non-invasive intravital imaging of cellular differentiation with a bright red-excitable fluorescent protein","volume":"11","author":"Chu","year":"2014","journal-title":"Nat. Methods"},{"key":"2025111306570327700_DEV204308C23","doi-asserted-by":"publisher","first-page":"575","DOI":"10.1073\/pnas.94.2.575","article-title":"Characterization of the chicken beta-globin insulator","volume":"94","author":"Chung","year":"1997","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111306570327700_DEV204308C24","first-page":"13","article-title":"pTRE-Tight Vectors","volume":"18","author":"CLONTECH","year":"2003","journal-title":"Clontechniques"},{"key":"2025111306570327700_DEV204308C25","doi-asserted-by":"publisher","first-page":"303","DOI":"10.1023\/A:1008826230315","article-title":"Nuclear localization signals enhance germline transmission of a transgene in zebrafish","volume":"7","author":"Collas","year":"1998","journal-title":"Transgenic Res."},{"key":"2025111306570327700_DEV204308C26","doi-asserted-by":"publisher","first-page":"491","DOI":"10.1091\/mbc.E18-06-0340","article-title":"Combining near-infrared fluorescence with Brainbow to visualize expression of specific genes within a multicolor context","volume":"30","author":"Cook","year":"2019","journal-title":"Mol. Biol. Cell"},{"key":"2025111306570327700_DEV204308C27","doi-asserted-by":"publisher","first-page":"33","DOI":"10.1016\/0378-1119(95)00685-0","article-title":"FACS-optimized mutants of the green fluorescent protein (GFP)","volume":"173","author":"Cormack","year":"1996","journal-title":"Gene"},{"key":"2025111306570327700_DEV204308C28","doi-asserted-by":"publisher","first-page":"11737","DOI":"10.1074\/jbc.273.19.11737","article-title":"The human ICAM-2 promoter is endothelial cell-specific in vitro and in vivo and contains critical Sp1 and GATA binding sites","volume":"273","author":"Cowan","year":"1998","journal-title":"J. Biol. Chem."},{"key":"2025111306570327700_DEV204308C29","doi-asserted-by":"publisher","first-page":"416","DOI":"10.1016\/j.jnutbio.2005.03.017","article-title":"Targeted and proximity-dependent promiscuous protein biotinylation by a mutant Escherichia coli biotin protein ligase","volume":"16","author":"Cronan","year":"2005","journal-title":"J. Nutr. Biochem."},{"key":"2025111306570327700_DEV204308C30","doi-asserted-by":"publisher","first-page":"7953","DOI":"10.1073\/pnas.88.18.7953","article-title":"High-frequency germ-line transmission of plasmid DNA sequences injected into fertilized zebrafish eggs","volume":"88","author":"Culp","year":"1991","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111306570327700_DEV204308C31","doi-asserted-by":"publisher","first-page":"6209","DOI":"10.1128\/JVI.78.12.6209-6221.2004","article-title":"Identification of synthetic endothelial cell-specific promoters by use of a high-throughput screen","volume":"78","author":"Dai","year":"2004","journal-title":"J. Virol."},{"key":"2025111306570327700_DEV204308C32","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1038\/mtm.2013.5","article-title":"Targeted CNS delivery using human minipromoters and demonstrated compatibility with adeno-associated viral vectors","volume":"1","author":"De Leeuw","year":"2014","journal-title":"Mol. Ther. Methods Clin. Dev."},{"key":"2025111306570327700_DEV204308C33","doi-asserted-by":"publisher","first-page":"293","DOI":"10.2174\/157015906778520782","article-title":"Molecular mechanisms, biological actions, and neuropharmacology of the growth-associated protein GAP-43","volume":"4","author":"Denny","year":"2006","journal-title":"Curr. Neuropharmacol."},{"key":"2025111306570327700_DEV204308C34","doi-asserted-by":"publisher","first-page":"e03848","DOI":"10.7554\/eLife.03848","article-title":"Early patterning and specification of cardiac progenitors in gastrulating mesoderm","volume":"3","author":"Devine","year":"2014","journal-title":"eLife"},{"key":"2025111306570327700_DEV204308C35","doi-asserted-by":"publisher","first-page":"3931","DOI":"10.1242\/dev.01256","article-title":"Mef2c is a direct transcriptional target of ISL1 and GATA factors in the anterior heart field during mouse embryonic development","volume":"131","author":"Dodou","year":"2004","journal-title":"Development"},{"key":"2025111306570327700_DEV204308C36","doi-asserted-by":"publisher","first-page":"69","DOI":"10.1089\/zeb.2016.1321","article-title":"A Tol2 Gateway-compatible toolbox for the study of the nervous system and neurodegenerative disease","volume":"14","author":"Don","year":"2017","journal-title":"Zebrafish"},{"key":"2025111306570327700_DEV204308C37","doi-asserted-by":"publisher","first-page":"5085","DOI":"10.1128\/JVI.72.6.5085-5092.1998","article-title":"Woodchuck hepatitis virus contains a tripartite posttranscriptional regulatory element","volume":"72","author":"Donello","year":"1998","journal-title":"J. Virol."},{"key":"2025111306570327700_DEV204308C38","doi-asserted-by":"publisher","first-page":"1027","DOI":"10.1099\/0022-1317-82-5-1027","article-title":"The \u2018cleavage\u2019 activities of foot-and-mouth disease virus 2A site-directed mutants and naturally occurring \u20182A-like\u2019 sequences","volume":"82","author":"Donnelly","year":"2001","journal-title":"J. Gen. Virol."},{"key":"2025111306570327700_DEV204308C39","doi-asserted-by":"publisher","first-page":"229","DOI":"10.1006\/dbio.2001.0515","article-title":"A transgenic Lef1\/beta-catenin-dependent reporter is expressed in spatially restricted domains throughout zebrafish development","volume":"241","author":"Dorsky","year":"2002","journal-title":"Dev. Biol."},{"key":"2025111306570327700_DEV204308C40","doi-asserted-by":"publisher","first-page":"2201","DOI":"10.1101\/gr.2456204","article-title":"Generation of the Brucella melitensis ORFeome version 1.1","volume":"14","author":"Dricot","year":"2004","journal-title":"Genome Res."},{"key":"2025111306570327700_DEV204308C41","doi-asserted-by":"publisher","first-page":"e61268","DOI":"10.7554\/eLife.61268","article-title":"A single-chain and fast-responding light-inducible Cre recombinase as a novel optogenetic switch","volume":"10","author":"Duplus-Bottin","year":"2021","journal-title":"eLife"},{"key":"2025111306570327700_DEV204308C42","doi-asserted-by":"publisher","first-page":"2169","DOI":"10.1101\/gr.2497604","article-title":"A first version of the Caenorhabditis elegans promoterome","volume":"14","author":"Dupuy","year":"2004","journal-title":"Genome Res."},{"key":"2025111306570327700_DEV204308C43","doi-asserted-by":"publisher","first-page":"113","DOI":"10.1016\/j.ydbio.2008.04.042","article-title":"Mifepristone-inducible LexPR system to drive and control gene expression in transgenic zebrafish","volume":"320","author":"Emelyanov","year":"2008","journal-title":"Dev. Biol."},{"key":"2025111306570327700_DEV204308C44","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1242\/dev.99.1.15","article-title":"Distribution, expression and germ line transmission of exogenous DNA sequences following microinjection into Xenopus laevis eggs","volume":"99","author":"Etkin","year":"1987","journal-title":"Development"},{"key":"2025111306570327700_DEV204308C45","doi-asserted-by":"publisher","first-page":"752","DOI":"10.1006\/bbrc.1997.7124","article-title":"Regulation of Cre recombinase activity by mutated estrogen receptor ligand-binding domains","volume":"237","author":"Feil","year":"1997","journal-title":"Biochem. Biophys. Res. Commun."},{"key":"2025111306570327700_DEV204308C46","doi-asserted-by":"publisher","first-page":"272","DOI":"10.1016\/j.devcel.2008.07.008","article-title":"miR-126 regulates angiogenic signaling and vascular integrity","volume":"15","author":"Fish","year":"2008","journal-title":"Dev. Cell"},{"key":"2025111306570327700_DEV204308C47","doi-asserted-by":"publisher","first-page":"3241","DOI":"10.1038\/s41598-019-40092-w","article-title":"Lifeact-GFP alters F-actin organization, cellular morphology and biophysical behaviour","volume":"9","author":"Flores","year":"2019","journal-title":"Sci. Rep."},{"key":"2025111306570327700_DEV204308C48","doi-asserted-by":"publisher","first-page":"e0159277","DOI":"10.1371\/journal.pone.0159277","article-title":"A MultiSite Gateway toolkit for rapid cloning of vertebrate expression constructs with diverse research applications","volume":"11","author":"Fowler","year":"2016","journal-title":"PLoS ONE"},{"key":"2025111306570327700_DEV204308C49","doi-asserted-by":"publisher","first-page":"541","DOI":"10.1038\/s41592-023-01809-y","article-title":"mScarlet3: a brilliant and fast-maturing red fluorescent protein","volume":"20","author":"Gadella","year":"2023","journal-title":"Nat. Methods"},{"key":"2025111306570327700_DEV204308C50","doi-asserted-by":"publisher","first-page":"4044","DOI":"10.1038\/s41467-020-17836-8","article-title":"Optogenetic control of protein binding using light-switchable nanobodies","volume":"11","author":"Gil","year":"2020","journal-title":"Nat. Commun."},{"key":"2025111306570327700_DEV204308C51","doi-asserted-by":"publisher","first-page":"751","DOI":"10.1038\/ncomms1738","article-title":"Structure-guided evolution of cyan fluorescent proteins towards a quantum yield of 93%","volume":"3","author":"Goedhart","year":"2012","journal-title":"Nat. Commun."},{"key":"2025111306570327700_DEV204308C52","doi-asserted-by":"publisher","first-page":"5547","DOI":"10.1073\/pnas.89.12.5547","article-title":"Tight control of gene expression in mammalian cells by tetracycline-responsive promoters","volume":"89","author":"Gossen","year":"1992","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111306570327700_DEV204308C53","doi-asserted-by":"publisher","first-page":"1766","DOI":"10.1126\/science.7792603","article-title":"Transcriptional activation by tetracyclines in mammalian cells","volume":"268","author":"Gossen","year":"1995","journal-title":"Science"},{"key":"2025111306570327700_DEV204308C54","doi-asserted-by":"publisher","first-page":"345","DOI":"10.1016\/j.ydbio.2015.09.004","article-title":"The Xenopus ORFeome: a resource that enables functional genomics","volume":"408","author":"Grant","year":"2015","journal-title":"Dev. Biol."},{"key":"2025111306570327700_DEV204308C55","doi-asserted-by":"publisher","first-page":"179","DOI":"10.1007\/978-1-4939-7265-4_15","article-title":"Synthesis of Janelia Fluor HaloTag and SNAP-Tag ligands and their use in cellular imaging experiments","volume":"1663","author":"Grimm","year":"2017","journal-title":"Methods Mol. Biol."},{"key":"2025111306570327700_DEV204308C56","doi-asserted-by":"publisher","first-page":"1953","DOI":"10.1242\/dev.127.9.1953","article-title":"Laser-induced gene expression in specific cells of transgenic zebrafish","volume":"127","author":"Halloran","year":"2000","journal-title":"Development"},{"key":"2025111306570327700_DEV204308C57","doi-asserted-by":"publisher","first-page":"442","DOI":"10.1016\/j.devcel.2015.04.001","article-title":"Chemokine-guided angiogenesis directs coronary vasculature formation in zebrafish","volume":"33","author":"Harrison","year":"2015","journal-title":"Dev. Cell"},{"key":"2025111306570327700_DEV204308C58","doi-asserted-by":"publisher","first-page":"1788","DOI":"10.1101\/gr.143000","article-title":"DNA cloning using in vitro site-specific recombination","volume":"10","author":"Hartley","year":"2000","journal-title":"Genome Res."},{"key":"2025111306570327700_DEV204308C59","doi-asserted-by":"publisher","first-page":"14280","DOI":"10.1074\/jbc.M312751200","article-title":"Genetically encoded indicators of cellular calcium dynamics based on troponin C and green fluorescent protein","volume":"279","author":"Heim","year":"2004","journal-title":"J. Biol. Chem."},{"key":"2025111306570327700_DEV204308C60","doi-asserted-by":"publisher","first-page":"14896","DOI":"10.1073\/pnas.0906348106","article-title":"Distinct populations of quiescent and proliferative pancreatic beta-cells identified by HOTcre mediated labeling","volume":"106","author":"Hesselson","year":"2009","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111306570327700_DEV204308C61","doi-asserted-by":"publisher","first-page":"695","DOI":"10.1016\/j.neuron.2010.09.027","article-title":"Genetic mosaic dissection of Lis1 and Ndel1 in neuronal migration","volume":"68","author":"Hippenmeyer","year":"2010","journal-title":"Neuron"},{"key":"2025111306570327700_DEV204308C62","doi-asserted-by":"publisher","first-page":"1132","DOI":"10.1038\/s41587-022-01278-2","article-title":"A highly photostable and bright green fluorescent protein","volume":"40","author":"Hirano","year":"2022","journal-title":"Nat. Biotechnol."},{"key":"2025111306570327700_DEV204308C63","doi-asserted-by":"publisher","first-page":"689","DOI":"10.1016\/0092-8674(81)90432-3","article-title":"Nucleotide sequence of the lexA gene of E. coli","volume":"23","author":"Horii","year":"1981","journal-title":"Cell"},{"key":"2025111306570327700_DEV204308C64","doi-asserted-by":"publisher","first-page":"e48","DOI":"10.1093\/nar\/gkv035","article-title":"Increased functional protein expression using nucleotide sequence features enriched in highly expressed genes in zebrafish","volume":"43","author":"Horstick","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"2025111306570327700_DEV204308C65","doi-asserted-by":"publisher","first-page":"112","DOI":"10.1038\/s41467-017-00140-3","article-title":"Genome editing abrogates angiogenesis in vivo","volume":"8","author":"Huang","year":"2017","journal-title":"Nat. Commun."},{"key":"2025111306570327700_DEV204308C66","doi-asserted-by":"publisher","first-page":"383","DOI":"10.1016\/S0092-8674(85)80011-8","article-title":"An intron-encoded protein is active in a gene conversion process that spreads an intron into a mitochondrial gene","volume":"41","author":"Jacquier","year":"1985","journal-title":"Cell"},{"key":"2025111306570327700_DEV204308C67","doi-asserted-by":"publisher","first-page":"109255","DOI":"10.1016\/j.celrep.2021.109255","article-title":"VEGFC\/FLT4-induced cell-cycle arrest mediates sprouting and differentiation of venous and lymphatic endothelial cells","volume":"35","author":"Jerafi-Vider","year":"2021","journal-title":"Cell Rep."},{"key":"2025111306570327700_DEV204308C269","doi-asserted-by":"publisher","first-page":"5199","DOI":"10.1242\/dev.02087","article-title":"Cellular and molecular analyses of vascular tube and lumen formation in zebrafish","volume":"132","author":"Jin","year":"2005","journal-title":"Development"},{"key":"2025111306570327700_DEV204308C268","doi-asserted-by":"publisher","first-page":"1291","DOI":"10.1038\/sj.gt.3301778","article-title":"Evaluation of Tet-on system to avoid transgene down-regulation in ex vivo gene transfer to the CNS","volume":"9","author":"Johansen","year":"2002","journal-title":"Gene Ther."},{"key":"2025111306570327700_DEV204308C68","doi-asserted-by":"publisher","first-page":"E56","DOI":"10.1093\/nar\/29.12.e56","article-title":"A single vector containing modified cre recombinase and LOX recombination sequences for inducible tissue-specific amplification of gene expression","volume":"29","author":"Kaczmarczyk","year":"2001","journal-title":"Nucleic Acids Res."},{"key":"2025111306570327700_DEV204308C69","doi-asserted-by":"publisher","first-page":"aad2197","DOI":"10.1126\/science.aad2197","article-title":"A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation","volume":"351","author":"Kaufman","year":"2016","journal-title":"Science"},{"key":"2025111306570327700_DEV204308C70","doi-asserted-by":"publisher","first-page":"11403","DOI":"10.1073\/pnas.97.21.11403","article-title":"Identification of a functional transposase of the Tol2 element, an Ac-like element from the Japanese medaka fish, and its transposition in the zebrafish germ lineage","volume":"97","author":"Kawakami","year":"2000","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111306570327700_DEV204308C71","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1016\/j.devcel.2004.06.005","article-title":"A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish","volume":"7","author":"Kawakami","year":"2004","journal-title":"Dev. Cell"},{"key":"2025111306570327700_DEV204308C72","doi-asserted-by":"publisher","first-page":"423","DOI":"10.1016\/0092-8674(84)90449-5","article-title":"The RNA lariat: a new ring to the splicing of mRNA precursors","volume":"39","author":"Keller","year":"1984","journal-title":"Cell"},{"key":"2025111306570327700_DEV204308C73","doi-asserted-by":"publisher","first-page":"dev20153","DOI":"10.1242\/dev.201531","article-title":"Next-generation plasmids for transgenesis in zebrafish and beyond","volume":"150","author":"Kemmler","year":"2023","journal-title":"Development"},{"key":"2025111306570327700_DEV204308C74","doi-asserted-by":"publisher","first-page":"1485","DOI":"10.1046\/j.1471-4159.2003.02128.x","article-title":"Transcriptional regulation of human excitatory amino acid transporter 1 (EAAT1): cloning of the EAAT1 promoter and characterization of its basal and inducible activity in human astrocytes","volume":"87","author":"Kim","year":"2003","journal-title":"J. Neurochem."},{"key":"2025111306570327700_DEV204308C75","doi-asserted-by":"publisher","first-page":"1188","DOI":"10.1091\/mbc.E15-12-0844","article-title":"An improved smaller biotin ligase for BioID proximity labeling","volume":"27","author":"Kim","year":"2016","journal-title":"Mol. Biol. Cell"},{"key":"2025111306570327700_DEV204308C76","doi-asserted-by":"publisher","first-page":"111","DOI":"10.1007\/7651_2015_251","article-title":"Inducible transgene expression in human iPS cells using versatile all-in-one piggyBac transposons","volume":"1357","author":"Kim","year":"2016","journal-title":"Methods Mol. Biol."},{"key":"2025111306570327700_DEV204308C77","doi-asserted-by":"publisher","first-page":"253","DOI":"10.1002\/aja.1002030302","article-title":"Stages of embryonic development of the zebrafish","volume":"203","author":"Kimmel","year":"1995","journal-title":"Dev. Dyn."},{"key":"2025111306570327700_DEV204308C78","doi-asserted-by":"publisher","first-page":"512","DOI":"10.1242\/jcs.195164","article-title":"A quantitative FastFUCCI assay defines cell cycle dynamics at a single-cell level","volume":"130","author":"Koh","year":"2017","journal-title":"J. Cell Sci."},{"key":"2025111306570327700_DEV204308C79","doi-asserted-by":"publisher","first-page":"5696","DOI":"10.1128\/MCB.19.8.5696","article-title":"Neoplastic transformation of RK3E by mutant beta-catenin requires deregulation of Tcf\/Lef transcription but not activation of c-myc expression","volume":"19","author":"Kolligs","year":"1999","journal-title":"Mol. Cell. Biol."},{"key":"2025111306570327700_DEV204308C80","doi-asserted-by":"publisher","first-page":"8125","DOI":"10.1093\/nar\/15.20.8125","article-title":"An analysis of 5'-noncoding sequences from 699 vertebrate messenger RNAs","volume":"15","author":"Kozak","year":"1987","journal-title":"Nucleic Acids Res."},{"key":"2025111306570327700_DEV204308C81","doi-asserted-by":"publisher","first-page":"3088","DOI":"10.1002\/dvdy.21343","article-title":"The Tol2kit: a MultiSite Gateway-based construction kit for Tol2 transposon transgenesis constructs","volume":"236","author":"Kwan","year":"2007","journal-title":"Dev. Dyn."},{"key":"2025111306570327700_DEV204308C82","doi-asserted-by":"publisher","first-page":"20","DOI":"10.1089\/zeb.2020.1951","article-title":"TAEL 2.0: an improved optogenetic expression system for zebrafish","volume":"18","author":"LaBelle","year":"2021","journal-title":"Zebrafish"},{"key":"2025111306570327700_DEV204308C83","doi-asserted-by":"publisher","first-page":"34","DOI":"10.1101\/gad.12.1.34","article-title":"New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB","volume":"12","author":"Lagrange","year":"1998","journal-title":"Genes Dev."},{"key":"2025111306570327700_DEV204308C84","doi-asserted-by":"publisher","first-page":"eadn6603","DOI":"10.1126\/sciadv.adn6603","article-title":"pIGLET: Safe harbor landing sites for reproducible and efficient transgenesis in zebrafish","volume":"10","author":"Lalonde","year":"2024","journal-title":"Sci. Adv."},{"key":"2025111306570327700_DEV204308C85","doi-asserted-by":"publisher","first-page":"1005","DOI":"10.1038\/nmeth.2171","article-title":"Improving FRET dynamic range with bright green and red fluorescent proteins","volume":"9","author":"Lam","year":"2012","journal-title":"Nat. Methods"},{"key":"2025111306570327700_DEV204308C86","doi-asserted-by":"publisher","first-page":"2064","DOI":"10.1101\/gr.2496804","article-title":"C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions","volume":"14","author":"Lamesch","year":"2004","journal-title":"Genome Res."},{"key":"2025111306570327700_DEV204308C87","doi-asserted-by":"publisher","first-page":"307","DOI":"10.1016\/j.ygeno.2006.11.012","article-title":"hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes","volume":"89","author":"Lamesch","year":"2007","journal-title":"Genomics"},{"key":"2025111306570327700_DEV204308C88","doi-asserted-by":"publisher","first-page":"669","DOI":"10.1242\/dev.00953","article-title":"Transcriptional regulation of the cardiac-specific MLC2 gene during Xenopus embryonic development","volume":"131","author":"Latinkic","year":"2004","journal-title":"Development"},{"key":"2025111306570327700_DEV204308C89","doi-asserted-by":"publisher","first-page":"34970","DOI":"10.1074\/jbc.273.52.34970","article-title":"Generation of destabilized green fluorescent protein as a transcription reporter","volume":"273","author":"Li","year":"1998","journal-title":"J. Biol. Chem."},{"key":"2025111306570327700_DEV204308C90","doi-asserted-by":"publisher","first-page":"e148","DOI":"10.1093\/nar\/gkr764","article-title":"Mobilization of giant piggyBac transposons in the mouse genome","volume":"39","author":"Li","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"2025111306570327700_DEV204308C91","doi-asserted-by":"publisher","first-page":"828","DOI":"10.1242\/dmm.010827","article-title":"piggyBac as a high-capacity transgenesis and gene-therapy vector in human cells and mice","volume":"6","author":"Li","year":"2013","journal-title":"Dis. Model. Mech."},{"key":"2025111306570327700_DEV204308C92","doi-asserted-by":"publisher","first-page":"E2279","DOI":"10.1073\/pnas.1305987110","article-title":"piggyBac transposase tools for genome engineering","volume":"110","author":"Li","year":"2013","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111306570327700_DEV204308C93","doi-asserted-by":"publisher","first-page":"E478","DOI":"10.1073\/pnas.1121543109","article-title":"A resurrected mammalian hAT transposable element and a closely related insect element are highly active in human cell culture","volume":"110","author":"Li","year":"2013","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111306570327700_DEV204308C94","doi-asserted-by":"publisher","first-page":"77","DOI":"10.1006\/dbio.1994.1009","article-title":"lacZ expression in germline transgenic zebrafish can be detected in living embryos","volume":"161","author":"Lin","year":"1994","journal-title":"Dev. Biol."},{"key":"2025111306570327700_DEV204308C95","doi-asserted-by":"publisher","first-page":"11213","DOI":"10.1016\/S0021-9258(18)99150-7","article-title":"The C terminus of mouse ornithine decarboxylase confers rapid degradation on dihydrofolate reductase. Support for the pest hypothesis","volume":"266","author":"Loetscher","year":"1991","journal-title":"J. Biol. Chem."},{"key":"2025111306570327700_DEV204308C96","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1186\/1472-6750-10-81","article-title":"Improved Tet-responsive promoters with minimized background expression","volume":"10","author":"Loew","year":"2010","journal-title":"BMC Biotechnol."},{"key":"2025111306570327700_DEV204308C97","doi-asserted-by":"publisher","first-page":"1120","DOI":"10.1210\/mend.12.8.0155","article-title":"Positive and negative discrimination of estrogen receptor agonists and antagonists using site-specific DNA recombinase fusion proteins","volume":"12","author":"Logie","year":"1998","journal-title":"Mol. Endocrinol."},{"key":"2025111306570327700_DEV204308C98","doi-asserted-by":"publisher","first-page":"373","DOI":"10.1021\/cb800025k","article-title":"HaloTag: a novel protein labeling technology for cell imaging and protein analysis","volume":"3","author":"Los","year":"2008","journal-title":"ACS Chem. Biol."},{"key":"2025111306570327700_DEV204308C99","doi-asserted-by":"publisher","first-page":"395","DOI":"10.1016\/S0092-8674(85)80012-X","article-title":"Transposition of an intron in yeast mitochondria requires a protein encoded by that intron","volume":"41","author":"Macreadie","year":"1985","journal-title":"Cell"},{"key":"2025111306570327700_DEV204308C100","doi-asserted-by":"publisher","first-page":"133","DOI":"10.1038\/nn.2467","article-title":"A robust and high-throughput Cre reporting and characterization system for the whole mouse brain","volume":"13","author":"Madisen","year":"2010","journal-title":"Nat. Neurosci."},{"key":"2025111306570327700_DEV204308C101","doi-asserted-by":"publisher","first-page":"632","DOI":"10.1186\/1471-2164-13-632","article-title":"Construction of a highly flexible and comprehensive gene collection representing the ORFeome of the human pathogen Chlamydia pneumoniae","volume":"13","author":"Maier","year":"2012","journal-title":"BMC Genomics"},{"key":"2025111306570327700_DEV204308C102","doi-asserted-by":"publisher","first-page":"e17896","DOI":"10.1371\/journal.pone.0017896","article-title":"An improved cerulean fluorescent protein with enhanced brightness and reduced reversible photoswitching","volume":"6","author":"Markwardt","year":"2011","journal-title":"PLoS ONE"},{"key":"2025111306570327700_DEV204308C103","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1073\/pnas.2235688100","article-title":"Electroporation and RNA interference in the rodent retina in vivo and in vitro","volume":"101","author":"Matsuda","year":"2004","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111306570327700_DEV204308C104","doi-asserted-by":"publisher","first-page":"2107","DOI":"10.1093\/emboj\/17.7.2107","article-title":"Nuclear history of a pre-mRNA determines the translational activity of cytoplasmic mRNA","volume":"17","author":"Matsumoto","year":"1998","journal-title":"EMBO J."},{"key":"2025111306570327700_DEV204308C105","doi-asserted-by":"publisher","first-page":"969","DOI":"10.1038\/13657","article-title":"Fluorescent proteins from nonbioluminescent Anthozoa species","volume":"17","author":"Matz","year":"1999","journal-title":"Nat. Biotechnol."},{"key":"2025111306570327700_DEV204308C106","doi-asserted-by":"publisher","first-page":"3665","DOI":"10.1073\/pnas.1019736108","article-title":"The pINDUCER lentiviral toolkit for inducible RNA interference in vitro and in vivo","volume":"108","author":"Meerbrey","year":"2011","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111306570327700_DEV204308C207","doi-asserted-by":"publisher","first-page":"9","DOI":"10.1016\/j.ab.2004.07.011","article-title":"Comparative analysis of inducible expression systems in transient transfection studies","volume":"334","author":"Meyer-Ficca","year":"2004","journal-title":"Anal. Biochem."},{"key":"2025111306570327700_DEV204308C107","doi-asserted-by":"publisher","first-page":"529","DOI":"10.1093\/nar\/9.3.529","article-title":"Organization of the lexA gene of Escherichia coli and nucleotide sequence of the regulatory region","volume":"9","author":"Miki","year":"1981","journal-title":"Nucleic Acids Res."},{"key":"2025111306570327700_DEV204308C108","doi-asserted-by":"publisher","first-page":"269","DOI":"10.1016\/0378-1119(89)90209-6","article-title":"Expression vector system based on the chicken beta-actin promoter directs efficient production of interleukin-5","volume":"79","author":"Miyazaki","year":"1989","journal-title":"Gene"},{"key":"2025111306570327700_DEV204308C209","doi-asserted-by":"publisher","first-page":"21","DOI":"10.1016\/s0304-4165(01)00195-7","article-title":"Characteristics of adenovirus-mediated tetracycline-controllable expression system","volume":"1568","author":"Mizuguchi","year":"2001","journal-title":"Biochim. Biophys. Acta"},{"key":"2025111306570327700_DEV204308C109","doi-asserted-by":"publisher","first-page":"376","DOI":"10.1006\/mthe.2000.0050","article-title":"IRES-dependent second gene expression is significantly lower than cap-dependent first gene expression in a bicistronic vector","volume":"1","author":"Mizuguchi","year":"2000","journal-title":"Mol. Ther."},{"key":"2025111306570327700_DEV204308C110","doi-asserted-by":"publisher","first-page":"1369","DOI":"10.1016\/j.neuron.2015.05.018","article-title":"Epigenomic signatures of neuronal diversity in the mammalian brain","volume":"86","author":"Mo","year":"2015","journal-title":"Neuron"},{"key":"2025111306570327700_DEV204308C111","author":"Mosimann","year":"2022"},{"key":"2025111306570327700_DEV204308C112","doi-asserted-by":"publisher","first-page":"169","DOI":"10.1242\/dev.059345","article-title":"Ubiquitous transgene expression and Cre-based recombination driven by the ubiquitin promoter in zebrafish","volume":"138","author":"Mosimann","year":"2011","journal-title":"Development"},{"key":"2025111306570327700_DEV204308C113","doi-asserted-by":"publisher","first-page":"949","DOI":"10.1002\/dvdy.23989","article-title":"Site-directed zebrafish transgenesis into single landing sites with the phiC31 integrase system","volume":"242","author":"Mosimann","year":"2013","journal-title":"Dev. Dyn."},{"key":"2025111306570327700_DEV204308C114","doi-asserted-by":"publisher","first-page":"196","DOI":"10.1038\/nchembio.1430","article-title":"An optogenetic gene expression system with rapid activation and deactivation kinetics","volume":"10","author":"Motta-Mena","year":"2014","journal-title":"Nat. Chem. Biol."},{"key":"2025111306570327700_DEV204308C115","doi-asserted-by":"publisher","first-page":"593","DOI":"10.1002\/dvg.20335","article-title":"A global double-fluorescent Cre reporter mouse","volume":"45","author":"Muzumdar","year":"2007","journal-title":"Genesis"},{"key":"2025111306570327700_DEV204308C116","doi-asserted-by":"publisher","first-page":"707","DOI":"10.1038\/mt.2009.302","article-title":"piggyBac transposon-mediated long-term gene expression in mice","volume":"18","author":"Nakanishi","year":"2010","journal-title":"Mol. Ther."},{"key":"2025111306570327700_DEV204308C117","doi-asserted-by":"publisher","first-page":"9449","DOI":"10.1073\/pnas.1100262108","article-title":"Structural basis of photosensitivity in a bacterial light-oxygen-voltage\/helix-turn-helix (LOV-HTH) DNA-binding protein","volume":"108","author":"Nash","year":"2011","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111306570327700_DEV204308C118","doi-asserted-by":"publisher","first-page":"63","DOI":"10.1242\/dmm.008367","article-title":"An inducible kras(V12) transgenic zebrafish model for liver tumorigenesis and chemical drug screening","volume":"5","author":"Nguyen","year":"2012","journal-title":"Dis. Model. Mech."},{"key":"2025111306570327700_DEV204308C119","doi-asserted-by":"publisher","first-page":"193","DOI":"10.1016\/0378-1119(91)90434-D","article-title":"Efficient selection for high-expression transfectants with a novel eukaryotic vector","volume":"108","author":"Niwa","year":"1991","journal-title":"Gene"},{"key":"2025111306570327700_DEV204308C120","doi-asserted-by":"publisher","first-page":"1304","DOI":"10.1038\/sj.gt.3301221","article-title":"Influence of promoter and WHV post-transcriptional regulatory element on AAV-mediated transgene expression in the rat brain","volume":"7","author":"Paterna","year":"2000","journal-title":"Gene Ther."},{"key":"2025111306570327700_DEV204308C121","doi-asserted-by":"publisher","first-page":"gkaf528","DOI":"10.1093\/nar\/gkaf528","article-title":"High-resolution profiling reveals coupled transcriptional and translational regulation of transgenes","volume":"53","author":"Peterman","year":"2024","journal-title":"Nucleic Acids Res."},{"key":"2025111306570327700_DEV204308C122","doi-asserted-by":"publisher","first-page":"440","DOI":"10.1016\/j.cell.2014.09.014","article-title":"CRISPR-Cas9 knockin mice for genome editing and cancer modeling","volume":"159","author":"Platt","year":"2014","journal-title":"Cell"},{"key":"2025111306570327700_DEV204308C123","first-page":"49","article-title":"Viral expression cassette elements to enhance transgene target specificity and expression in gene therapy","volume":"19","author":"Powell","year":"2015","journal-title":"Discov. Med."},{"key":"2025111306570327700_DEV204308C224","doi-asserted-by":"publisher","first-page":"34","DOI":"10.1016\/j.ydbio.2010.08.036","article-title":"Cranial vasculature in zebrafish forms by angioblast cluster-derived angiogenesis","volume":"348","author":"Proulx","year":"2010","journal-title":"Dev. Biol."},{"key":"2025111306570327700_DEV204308C124","doi-asserted-by":"publisher","first-page":"e10611","DOI":"10.1371\/journal.pone.0010611","article-title":"Systematic comparison of constitutive promoters and the doxycycline-inducible promoter","volume":"5","author":"Qin","year":"2010","journal-title":"PLoS ONE"},{"key":"2025111306570327700_DEV204308C125","doi-asserted-by":"publisher","first-page":"470","DOI":"10.1186\/1471-2164-11-470","article-title":"The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology","volume":"11","author":"Rajagopala","year":"2010","journal-title":"BMC Genomics"},{"key":"2025111306570327700_DEV204308C126","doi-asserted-by":"publisher","first-page":"458","DOI":"10.1006\/mthe.2000.0190","article-title":"Lentiviral vectors for enhanced gene expression in human hematopoietic cells","volume":"2","author":"Ramezani","year":"2000","journal-title":"Mol. Ther."},{"key":"2025111306570327700_DEV204308C127","doi-asserted-by":"publisher","first-page":"e162","DOI":"10.1371\/journal.pone.0000162","article-title":"High-efficiency FLP and PhiC31 site-specific recombination in mammalian cells","volume":"2","author":"Raymond","year":"2007","journal-title":"PLoS ONE"},{"key":"2025111306570327700_DEV204308C128","doi-asserted-by":"publisher","first-page":"345","DOI":"10.1242\/dev.139238","article-title":"TAEL: a zebrafish-optimized optogenetic gene expression system with fine spatial and temporal control","volume":"144","author":"Reade","year":"2017","journal-title":"Development"},{"key":"2025111306570327700_DEV204308C129","doi-asserted-by":"publisher","first-page":"35","DOI":"10.1038\/ng1140","article-title":"C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression","volume":"34","author":"Reboul","year":"2003","journal-title":"Nat. Genet."},{"key":"2025111306570327700_DEV204308C130","doi-asserted-by":"publisher","first-page":"6883","DOI":"10.1073\/pnas.102179399","article-title":"Position-effect protection and enhancer blocking by the chicken beta-globin insulator are separable activities","volume":"99","author":"Recillas-Targa","year":"2002","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111306570327700_DEV204308C131","doi-asserted-by":"publisher","first-page":"106","DOI":"10.1002\/cyto.10117","article-title":"Stable expression of Anthozoa fluorescent proteins in mammalian cells","volume":"48","author":"Richards","year":"2002","journal-title":"Cytometry"},{"key":"2025111306570327700_DEV204308C132","doi-asserted-by":"publisher","first-page":"605","DOI":"10.1038\/nmeth.1220","article-title":"Lifeact: a versatile marker to visualize F-actin","volume":"5","author":"Riedl","year":"2008","journal-title":"Nat. Methods"},{"key":"2025111306570327700_DEV204308C133","doi-asserted-by":"publisher","first-page":"5332","DOI":"10.1016\/S0021-9258(18)53537-7","article-title":"In vivo analysis of the murine beta-myosin heavy chain gene promoter","volume":"268","author":"Rindt","year":"1993","journal-title":"J. Biol. Chem."},{"key":"2025111306570327700_DEV204308C134","doi-asserted-by":"publisher","first-page":"10024","DOI":"10.1021\/bi301306t","article-title":"Identification of natural and artificial DNA substrates for light-activated LOV-HTH transcription factor EL222","volume":"51","author":"Rivera-Cancel","year":"2012","journal-title":"Biochemistry"},{"key":"2025111306570327700_DEV204308C135","doi-asserted-by":"publisher","first-page":"445","DOI":"10.1038\/nbt945","article-title":"An improved cyan fluorescent protein variant useful for FRET","volume":"22","author":"Rizzo","year":"2004","journal-title":"Nat. Biotechnol."},{"key":"2025111306570327700_DEV204308C136","doi-asserted-by":"publisher","first-page":"887","DOI":"10.1038\/nmeth953","article-title":"Targeting and tracing antigens in live cells with fluorescent nanobodies","volume":"3","author":"Rothbauer","year":"2006","journal-title":"Nat. Methods"},{"key":"2025111306570327700_DEV204308C137","doi-asserted-by":"publisher","first-page":"2128","DOI":"10.1101\/gr.2973604","article-title":"Human ORFeome version 1.1: a platform for reverse proteomics","volume":"14","author":"Rual","year":"2004","journal-title":"Genome Res."},{"key":"2025111306570327700_DEV204308C138","doi-asserted-by":"publisher","first-page":"221","DOI":"10.1016\/j.bcmd.2007.05.003","article-title":"A chromatin insulator blocks interactions between globin regulatory elements and cellular promoters in erythroid cells","volume":"39","author":"Ryu","year":"2007","journal-title":"Blood Cells Mol. Dis."},{"key":"2025111306570327700_DEV204308C139","doi-asserted-by":"publisher","first-page":"487","DOI":"10.1016\/j.cell.2007.12.033","article-title":"Visualizing spatiotemporal dynamics of multicellular cell-cycle progression","volume":"132","author":"Sakaue-Sawano","year":"2008","journal-title":"Cell"},{"key":"2025111306570327700_DEV204308C140","doi-asserted-by":"publisher","first-page":"391","DOI":"10.1016\/j.ymthe.2005.08.012","article-title":"Equal potency of gammaretroviral and lentiviral SIN vectors for expression of O6-methylguanine-DNA methyltransferase in hematopoietic cells","volume":"13","author":"Schambach","year":"2006","journal-title":"Mol. Ther."},{"key":"2025111306570327700_DEV204308C141","doi-asserted-by":"publisher","first-page":"671","DOI":"10.1038\/nmeth.2089","article-title":"NIH Image to ImageJ: 25 years of image analysis","volume":"9","author":"Schneider","year":"2012","journal-title":"Nat. Methods"},{"key":"2025111306570327700_DEV204308C142","doi-asserted-by":"publisher","first-page":"1787","DOI":"10.1093\/nar\/24.9.1787","article-title":"The human ubiquitin C promoter directs high ubiquitous expression of transgenes in mice","volume":"24","author":"Schorpp","year":"1996","journal-title":"Nucleic Acids Res."},{"key":"2025111306570327700_DEV204308C143","doi-asserted-by":"publisher","first-page":"13","DOI":"10.3389\/neuro.04.013.2009","article-title":"The cellular architecture of the larval zebrafish tectum, as revealed by gal4 enhancer trap lines","volume":"3","author":"Scott","year":"2009","journal-title":"Front. Neural Circuits"},{"key":"2025111306570327700_DEV204308C144","doi-asserted-by":"publisher","first-page":"1567","DOI":"10.1038\/nbt1037","article-title":"Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein","volume":"22","author":"Shaner","year":"2004","journal-title":"Nat. Biotechnol."},{"key":"2025111306570327700_DEV204308C145","doi-asserted-by":"publisher","first-page":"751","DOI":"10.1038\/nmeth.2521","article-title":"Near-infrared fluorescent proteins for multicolor in vivo imaging","volume":"10","author":"Shcherbakova","year":"2013","journal-title":"Nat. Methods"},{"key":"2025111306570327700_DEV204308C146","doi-asserted-by":"publisher","first-page":"567","DOI":"10.1042\/BJ20081949","article-title":"Far-red fluorescent tags for protein imaging in living tissues","volume":"418","author":"Shcherbo","year":"2009","journal-title":"Biochem. J."},{"key":"2025111306570327700_DEV204308C147","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1002\/gene.10023","article-title":"Codon-improved Cre recombinase (iCre) expression in the mouse","volume":"32","author":"Shimshek","year":"2002","journal-title":"Genesis"},{"key":"2025111306570327700_DEV204308C148","doi-asserted-by":"publisher","first-page":"3785","DOI":"10.1242\/dev.137901","article-title":"Vegfc acts through ERK to induce sprouting and differentiation of trunk lymphatic progenitors","volume":"143","author":"Shin","year":"2016","journal-title":"Development"},{"key":"2025111306570327700_DEV204308C149","doi-asserted-by":"publisher","first-page":"e97764","DOI":"10.1371\/journal.pone.0097764","article-title":"Development of a multipurpose GATEWAY-based lentiviral tetracycline-regulated conditional RNAi system (GLTR)","volume":"9","author":"Sigl","year":"2014","journal-title":"PLoS ONE"},{"key":"2025111306570327700_DEV204308C150","doi-asserted-by":"publisher","first-page":"e13918","DOI":"10.7554\/eLife.13918","article-title":"A robust activity marking system for exploring active neuronal ensembles","volume":"5","author":"Sorensen","year":"2016","journal-title":"eLife"},{"key":"2025111306570327700_DEV204308C151","doi-asserted-by":"publisher","first-page":"209","DOI":"10.1016\/j.ydbio.2014.06.022","article-title":"The pros and cons of common actin labeling tools for visualizing actin dynamics during Drosophila oogenesis","volume":"393","author":"Spracklen","year":"2014","journal-title":"Dev. Biol."},{"key":"2025111306570327700_DEV204308C152","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1242\/dev.103.2.403","article-title":"Replication, integration and stable germ-line transmission of foreign sequences injected into early zebrafish embryos","volume":"103","author":"Stuart","year":"1988","journal-title":"Development"},{"key":"2025111306570327700_DEV204308C153","doi-asserted-by":"publisher","first-page":"e28674","DOI":"10.1371\/journal.pone.0028674","article-title":"An enhanced monomeric blue fluorescent protein with the high chemical stability of the chromophore","volume":"6","author":"Subach","year":"2011","journal-title":"PLoS ONE"},{"key":"2025111306570327700_DEV204308C154","doi-asserted-by":"publisher","first-page":"91","DOI":"10.1016\/S0925-4773(02)00218-6","article-title":"I-SceI meganuclease mediates highly efficient transgenesis in fish","volume":"118","author":"Thermes","year":"2002","journal-title":"Mech. Dev."},{"key":"2025111306570327700_DEV204308C155","doi-asserted-by":"publisher","first-page":"425","DOI":"10.1016\/j.celrep.2017.03.045","article-title":"Biotagging of specific cell populations in zebrafish reveals gene regulatory logic encoded in the nuclear transcriptome","volume":"19","author":"Trinh","year":"2017","journal-title":"Cell Rep."},{"key":"2025111306570327700_DEV204308C156","doi-asserted-by":"publisher","first-page":"1434","DOI":"10.1101\/gad.8.12.1434","article-title":"Expression of achaete-scute homolog 3 in Xenopus embryos converts ectodermal cells to a neural fate","volume":"8","author":"Turner","year":"1994","journal-title":"Genes Dev."},{"key":"2025111306570327700_DEV204308C157","doi-asserted-by":"publisher","first-page":"14693","DOI":"10.1038\/srep14693","article-title":"Plasma membrane restricted RhoGEF activity is sufficient for RhoA-mediated actin polymerization","volume":"5","author":"Van Unen","year":"2015","journal-title":"Sci. Rep."},{"key":"2025111306570327700_DEV204308C158","doi-asserted-by":"publisher","first-page":"3077","DOI":"10.1002\/dvdy.21354","article-title":"Gateway compatible vectors for analysis of gene function in the zebrafish","volume":"236","author":"Villefranc","year":"2007","journal-title":"Dev. Dyn."},{"key":"2025111306570327700_DEV204308C159","doi-asserted-by":"publisher","first-page":"579","DOI":"10.1038\/nature20602","article-title":"Integrin-YAP\/TAZ-JNK cascade mediates atheroprotective effect of unidirectional shear flow","volume":"540","author":"Wang","year":"2016","journal-title":"Nature"},{"key":"2025111306570327700_DEV204308C160","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1093\/cvr\/cvu174","article-title":"Rapid and highly efficient inducible cardiac gene knockout in adult mice using AAV-mediated expression of Cre recombinase","volume":"104","author":"Werfel","year":"2014","journal-title":"Cardiovasc. Res."},{"key":"2025111306570327700_DEV204308C161","doi-asserted-by":"publisher","first-page":"453","DOI":"10.1016\/j.molcel.2004.10.005","article-title":"Recruitment of histone modifications by USF proteins at a vertebrate barrier element","volume":"16","author":"West","year":"2004","journal-title":"Mol. Cell"},{"key":"2025111306570327700_DEV204308C162","doi-asserted-by":"publisher","first-page":"591","DOI":"10.1101\/gad.6.4.591","article-title":"Specific activation of mammalian Hox promoters in mosaic transgenic zebrafish","volume":"6","author":"Westerfield","year":"1992","journal-title":"Genes Dev."},{"key":"2025111306570327700_DEV204308C163","doi-asserted-by":"publisher","first-page":"2195","DOI":"10.1016\/j.febslet.2006.03.019","article-title":"Identification of new central nervous system specific mouse microRNAs","volume":"580","author":"Wheeler","year":"2006","journal-title":"FEBS Lett."},{"key":"2025111306570327700_DEV204308C164","doi-asserted-by":"publisher","first-page":"8","DOI":"10.3389\/fnmol.2011.00008","article-title":"A molecular toolbox for rapid generation of viral vectors to up- or down-regulate neuronal gene expression in vivo","volume":"4","author":"White","year":"2011","journal-title":"Front. Mol. Neurosci."},{"key":"2025111306570327700_DEV204308C165","doi-asserted-by":"publisher","first-page":"45","DOI":"10.1016\/j.devcel.2013.06.007","article-title":"ETS factors regulate Vegf-dependent arterial specification","volume":"26","author":"Wythe","year":"2013","journal-title":"Dev. Cell"},{"key":"2025111306570327700_DEV204308C166","doi-asserted-by":"publisher","first-page":"1288","DOI":"10.1038\/s41592-025-02676-5","article-title":"A highly stable monomeric red fluorescent protein for advanced microscopy","volume":"22","author":"Xiong","year":"2025","journal-title":"Nat. Methods"},{"key":"2025111306570327700_DEV204308C167","doi-asserted-by":"publisher","first-page":"746818","DOI":"10.3389\/fcell.2021.746818","article-title":"Overexpression of lifeact-GFP disrupts F-actin organization in cardiomyocytes and impairs cardiac function","volume":"9","author":"Xu","year":"2021","journal-title":"Front. Cell Dev. Biol."},{"key":"2025111306570327700_DEV204308C168","doi-asserted-by":"publisher","DOI":"10.21203\/rs.3.rs-5629743\/v1","article-title":"A highly photostable monomeric red fluorescent protein","author":"Xu","year":"2024","journal-title":"Res. Square"},{"key":"2025111306570327700_DEV204308C169","doi-asserted-by":"publisher","first-page":"659","DOI":"10.1038\/nmeth.1638","article-title":"A public genome-scale lentiviral expression library of human ORFs","volume":"8","author":"Yang","year":"2011","journal-title":"Nat. Methods"},{"key":"2025111306570327700_DEV204308C170","doi-asserted-by":"publisher","first-page":"827","DOI":"10.1016\/S1525-0016(03)00104-7","article-title":"Lentiviral vectors with two independent internal promoters transfer high-level expression of multiple transgenes to human hematopoietic stem-progenitor cells","volume":"7","author":"Yu","year":"2003","journal-title":"Mol. Ther."},{"key":"2025111306570327700_DEV204308C171","doi-asserted-by":"publisher","first-page":"1531","DOI":"10.1073\/pnas.1008322108","article-title":"A hyperactive piggyBac transposase for mammalian applications","volume":"108","author":"Yusa","year":"2011","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111306570327700_DEV204308C172","doi-asserted-by":"publisher","first-page":"8620","DOI":"10.1073\/pnas.0402938101","article-title":"The 5'-HS4 chicken beta-globin insulator is a CTCF-dependent nuclear matrix-associated element","volume":"101","author":"Yusufzai","year":"2004","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2025111306570327700_DEV204308C173","doi-asserted-by":"publisher","first-page":"913","DOI":"10.1126\/science.1068539","article-title":"Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells","volume":"296","author":"Zacharias","year":"2002","journal-title":"Science"},{"key":"2025111306570327700_DEV204308C174","doi-asserted-by":"publisher","DOI":"10.1002\/0471142956.cy1227s60","article-title":"Near-infrared molecular probes for in vivo imaging","author":"Zhang","year":"2012","journal-title":"Curr. Protoc. Cytom."},{"key":"2025111306570327700_DEV204308C175","doi-asserted-by":"publisher","first-page":"657","DOI":"10.1038\/s41592-024-02203-y","article-title":"Bright and stable monomeric green fluorescent protein derived from StayGold","volume":"21","author":"Zhang","year":"2024","journal-title":"Nat. Methods"},{"key":"2025111306570327700_DEV204308C176","doi-asserted-by":"publisher","first-page":"1382","DOI":"10.1038\/sj.gt.3302780","article-title":"Optimization of the Tet-On system for regulated gene expression through viral evolution","volume":"13","author":"Zhou","year":"2006","journal-title":"Gene Ther."},{"key":"2025111306570327700_DEV204308C177","doi-asserted-by":"publisher","first-page":"645","DOI":"10.1038\/nature10094","article-title":"Latent TGF-beta binding protein 3 identifies a second heart field in zebrafish","volume":"474","author":"Zhou","year":"2011","journal-title":"Nature"},{"key":"2025111306570327700_DEV204308C178","doi-asserted-by":"publisher","first-page":"265","DOI":"10.1046\/j.1365-313x.2000.00868.x","article-title":"Technical advance: an estrogen receptor-based transactivator XVE mediates highly inducible gene expression in transgenic plants","volume":"24","author":"Zuo","year":"2000","journal-title":"Plant J."}],"container-title":["Development"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/journals.biologists.com\/dev\/article-pdf\/doi\/10.1242\/dev.204308\/3673170\/dev204308.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/journals.biologists.com\/dev\/article-pdf\/doi\/10.1242\/dev.204308\/3673170\/dev204308.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,11,13]],"date-time":"2025-11-13T11:57:12Z","timestamp":1763035032000},"score":1,"resource":{"primary":{"URL":"https:\/\/journals.biologists.com\/dev\/article\/152\/22\/dev204308\/369816\/MultiSite-Assembly-of-Gateway-Induced-Clones-MAGIC"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,11,13]]},"references-count":183,"journal-issue":{"issue":"22","published-print":{"date-parts":[[2025,11,15]]}},"URL":"https:\/\/doi.org\/10.1242\/dev.204308","relation":{},"ISSN":["0950-1991","1477-9129"],"issn-type":[{"value":"0950-1991","type":"print"},{"value":"1477-9129","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,11,13]]},"article-number":"dev204308"}}