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Description of <i>Mycobacterium conceptionense<\/i> sp. nov., a <i>Mycobacterium fortuitum<\/i> group organism isolated from a posttraumatic osteitis inflammation. J. Clin. Microbiol. 44:1268&ndash;1273."},{"key":"3","doi-asserted-by":"publisher","DOI":"10.1016\/S0378-1097(02)00883-2"},{"key":"4","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.67.1.22-32.2001"},{"key":"5","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.68.4.1786-1793.2002"},{"key":"6","doi-asserted-by":"crossref","unstructured":"8. Appelgren, P., F. Farnebo, L. Dotevall, M. Studahl, B. J&ouml;nsson, and B. Petrini. 2008. Late-onset posttraumatic skin and soft-tissue infections caused by rapid-growing mycobacteria in tsunami survivors. Clin. Infect. Dis. 47:e11&ndash;6.","DOI":"10.1086\/589300"},{"key":"7","doi-asserted-by":"crossref","unstructured":"9. Butler, M.J., E.J. Friend, I.S. Hunter, F.S. Kaczmarek, D.A. Sugden, and M. Warren. 1989. Molecular cloning of resistance genes and architecture of a linked gene cluster involved in biosynthesis of oxytetracycline by <i>Streptomyces rimosus<\/i>. Mol. Gen. Genet. 215:231&ndash;238.","DOI":"10.1007\/BF00339722"},{"key":"8","doi-asserted-by":"crossref","unstructured":"10. Chee-Sanford, J.C., R.I. Mackie, S. Koike, I.G. Krapac, Y.-F. Lin, A.C. Yannarell, S. Maxwell, and R.I. Aminov. 2009. Fate and transport of antibiotic residues and antibiotic resistance genes following land application of manure waste. J. Environ. Qual. 38:1086&ndash;1108.","DOI":"10.2134\/jeq2008.0128"},{"key":"9","doi-asserted-by":"publisher","DOI":"10.1099\/ijs.0.64915-0"},{"key":"10","doi-asserted-by":"crossref","unstructured":"12. Coenye, T., T. Spilker, A. Martin, and J.J. LiPuma. 2002. Comparative assessment of genotyping methods for epidemiologic study of <i>Burkholderia cepacia<\/i> genomovar III. J. Clin. Microbiol. 40:3300&ndash;3307.","DOI":"10.1128\/JCM.40.9.3300-3307.2002"},{"key":"11","doi-asserted-by":"crossref","unstructured":"13. Davelos Baines, A.L., K. Xiao, and L.L. Kinkel. 2007. Lack of correspondence between genetic and phenotypic groups amongst soil-borne streptomycetes. FEMS Microbiol. Ecol. 59:564&ndash;575.","DOI":"10.1111\/j.1574-6941.2006.00231.x"},{"key":"12","doi-asserted-by":"publisher","DOI":"10.1126\/science.1120800"},{"key":"13","doi-asserted-by":"crossref","unstructured":"15. De Groote, M.A., and G. Huitt. 2006. Infections due to rapidly growing mycobacteria. Clin. Infect. Dis. 42:1756&ndash;1763.","DOI":"10.1086\/504381"},{"key":"14","doi-asserted-by":"crossref","unstructured":"17. De Rossi, E., J.A. A&iacute;nsa, and G. Riccardi. 2005. Role of mycobacterial efflux transporters in drug resistance: an unresolved question. FEMS Microbiol. Rev. 30:36&ndash;52.","DOI":"10.1111\/j.1574-6976.2005.00002.x"},{"key":"15","doi-asserted-by":"crossref","unstructured":"18. De Rossi, E., P. Arrigo, M. Bellinzoni, P.E.A. Silva, C. Mart&iacute;n, J.A. A&iacute;nsa, P. Guglierame, and G. Riccardi. 2002. The multidrug transporters belonging to major facilitator superfamily (MFS) in <i>Mycobacterium tuberculosis<\/i>. Mol. Med. 8:714&ndash;724.","DOI":"10.1007\/BF03402035"},{"key":"16","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/17.19.7843"},{"key":"17","doi-asserted-by":"crossref","unstructured":"22. Esteban, J., N.Z. Mart&iacute;n-de-Hijas, A. Ortiz, T.J. Kinnari, A. Bodas S&aacute;nchez, I. Gadea, and R. Fern&aacute;ndez-Roblas. 2009. Detection of <i>lfr<\/i>A and <i>tap<\/i> efflux pump genes among clinical isolates of non-pigmented rapidly growing mycobacteria. Int. J. Antimicrob. Agents 34:454&ndash;456.","DOI":"10.1016\/j.ijantimicag.2009.06.026"},{"key":"18","unstructured":"23. Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95\/98\/NT. Nucleic Acids Symp. Ser. 41:95&ndash;98."},{"key":"19","doi-asserted-by":"crossref","unstructured":"24. Han, X.Y., I. D&eacute;, and K.L. Jacobson. 2007. Rapidly growing mycobacteria: clinical and microbiologic studies of 115 cases. Am. J. Clin. Pathol. 128:612&ndash;621.","DOI":"10.1309\/1KB2GKYT1BUEYLB5"},{"key":"20","doi-asserted-by":"crossref","unstructured":"25. Hartmans, S., J.A.M. De Bont, and E. Stackebrandt. 2006. The genus <i>Mycobacterium<\/i>&mdash;nonmedical, p. 889&ndash;918. <i>In<\/i> S. Falkow, E. Rosenberg, K.-H. Schleifer, E. Stackebrandt, and M. Dworkin (ed.), The Prokaryotes, vol. 3. Springer-Verlag, New York.","DOI":"10.1007\/0-387-30743-5_33"},{"key":"21","unstructured":"26. Hindler, J.F., and S. Munro. 2010. Disk diffusion test, p. 5.1.1.&ndash;5.1.13. <i>In<\/i> L.S. Garcia, and H.D. Isenberg (ed.), Clinical Microbiology Procedures Handbook, 3rd ed., vol. 2. ASM Press, Washington, DC."},{"key":"22","doi-asserted-by":"crossref","unstructured":"28. Jirout, J., J. T&#345;&iacute;ska, K. R&#367;&#382;i&#269;kov&aacute;, and D. Elhottov&aacute;. 2009. Disturbing impact of outdoor cattle husbandry on community of arbuscular mycorrhizal fungi in upland pasture soil. Commun. Soil Sci. Plant Anal. 40:736&ndash;745.","DOI":"10.1080\/00103620802693532"},{"key":"23","doi-asserted-by":"crossref","unstructured":"30. Lane, D.J., B. Pace, G.J. Olsen, D.A. Stahl, and N.R. Pace. 1985. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc. Nat. Acad. Sci. U.S.A. 82:6955&ndash;6959.","DOI":"10.1073\/pnas.82.20.6955"},{"key":"24","unstructured":"31. Lanoot, B., M. Vancanneyt, P. Dawyndt, M.C. Cnockaert, J. Zhang, Y. Huang, Z. Liu, and J. Swings. 2004. BOX-PCR fingerprinting as a powerful tool to reveal synonymous names in the genus <i>Streptomyces<\/i>. Emended descriptions are proposed for the species <i>Streptomyces cinereorectus<\/i>, <i>S. fradiae<\/i>, <i>S. tricolor<\/i>, <i>S. colombiensis<\/i>, <i>S. filamentous<\/i>, <i>S. vinaceus<\/i> and <i>S. phaeopurpureus<\/i>. Syst. Appl. Microbiol. 27:84&ndash;92."},{"key":"25","doi-asserted-by":"crossref","unstructured":"32. Levy, S.B., L.M. McMurry, T.M. Barbosa, V. Burdett, P. Courvalin, W. Hillen, M.C. Roberts, J.I. Rood, and D.E. Taylor. 1999. Nomenclature for new tetracycline resistance determinants. Antimicrob. Agents Chemother. 43:1523&ndash;1524.","DOI":"10.1128\/AAC.43.6.1523"},{"key":"26","doi-asserted-by":"crossref","unstructured":"33. Louw, G.E., R.M. Warren, N.C. Gey van Pittius, C.R.E. McEvoy, P.D. Van Helden, and T.C. Victor. 2009. A balancing act: efflux\/influx in mycobacterial drug resistance. Antimicrob. Agents Chemother. 53:3181&ndash;3189.","DOI":"10.1128\/AAC.01577-08"},{"key":"27","doi-asserted-by":"crossref","unstructured":"35. Nash, K.A., N. Andini, Y. 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