{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,5]],"date-time":"2026-09-05T05:16:37Z","timestamp":1788585397096,"version":"build-2803163510"},"reference-count":15,"publisher":"Japanese Society of Microbial Ecology","issue":"3","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Microb. Environ.","Microbes Environ.","Microbes and environments"],"published-print":{"date-parts":[[2026]]},"DOI":"10.1264\/jsme2.me26030","type":"journal-article","created":{"date-parts":[[2026,9,3]],"date-time":"2026-09-03T22:12:21Z","timestamp":1788473541000},"page":"n\/a","source":"Crossref","is-referenced-by-count":0,"title":["Root-associated Bacterial Communities of Sugarcane Cultivated for Traditional Wasanbon Sugar differ among Cultivation Sites in Kagawa, Japan"],"prefix":"10.1264","volume":"41","author":[{"given":"Yasunobu","family":"Yamada","sequence":"first","affiliation":[{"name":"Faculty of Agriculture, Kagawa University"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Md Shahidul","family":"Islam","sequence":"additional","affiliation":[{"name":"Faculty of Agriculture, Kagawa University"},{"name":"The United Graduate School of Agricultural Sciences, Ehime University"},{"name":"Bangladesh Sugarcrop Research Institute"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kaoru","family":"Matsumoto","sequence":"additional","affiliation":[{"name":"Bioinformatics Analysis Center, Kagawa University"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Masahiro","family":"Morokuma","sequence":"additional","affiliation":[{"name":"Faculty of Agriculture, Kagawa University"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mika","family":"Nomura","sequence":"additional","affiliation":[{"name":"Faculty of Agriculture, Kagawa University"},{"name":"Faculty of Agriculture, Saga University"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"336","reference":[{"key":"1","doi-asserted-by":"crossref","unstructured":"Boddey, R.M., Urquiaga, S., Alves, B.J., and Reis, V. (2003) Endophytic nitrogen fixation in sugarcane: present knowledge and future applications. Plant Soil               252: 139\u2013149.","DOI":"10.1023\/A:1024152126541"},{"key":"2","doi-asserted-by":"crossref","unstructured":"Bulgarelli, D., Schlaeppi, K., Spaepen, S., van Themaat, E.V.L., and Schulze-Lefert, P. (2013) Structure and functions of the bacterial microbiota of plants. Annu Rev Plant Biol               64: 807\u2013838.","DOI":"10.1146\/annurev-arplant-050312-120106"},{"key":"3","doi-asserted-by":"crossref","unstructured":"Callahan, B.J., McMurdie, P.J., Rosen, M.J., Han, A.W., Johnson, A.J.A., and Holmes, S.P. (2016) DADA2: High-resolution sample inference from Illumina amplicon data. Nat Methods               13: 581\u2013583.","DOI":"10.1038\/nmeth.3869"},{"key":"4","doi-asserted-by":"crossref","unstructured":"Caro, T.A., McFarlin, J., Jech, S., Fierer, N., and Kopf, S. (2023) Hydrogen stable isotope probing of lipids demonstrates slow rates of microbial growth in soil. Proc Natl Acad Sci U S A               120: e2211625120.","DOI":"10.1073\/pnas.2211625120"},{"key":"5","doi-asserted-by":"crossref","unstructured":"Carvalho, T.L.G., Balsem\u00e3o-Pires, E., Saraiva, R.M., Ferreira, P.C.G., and Hemerly, A.S. (2014) Nitrogen signalling in plant interactions with associative and endophytic diazotrophic bacteria. J Exp Bot               65: 5631\u20135642.","DOI":"10.1093\/jxb\/eru319"},{"key":"6","doi-asserted-by":"crossref","unstructured":"Dong, M., Yang, Z., Cheng, G., Peng, L., Xu, Q., and Xu, J. (2018) Diversity of the bacterial microbiome in the roots of four <i>Saccharum<\/i> species: <i>S. spontaneum<\/i>, <i>S. robustum<\/i>, <i>S. barberi<\/i>, and <i>S. officinarum<\/i>. Front Microbiol               9: 267.","DOI":"10.3389\/fmicb.2018.00267"},{"key":"7","doi-asserted-by":"crossref","unstructured":"Edwards, J., Johnson, C., Santos-Medell\u00edn, C., Lurie, E., Podishetty, N.K., Bhatnagar, S., et al. (2015) Structure, variation, and assembly of the root-associated microbiomes of rice. Proc Natl Acad Sci U S A               112: E911\u2013E920.","DOI":"10.1073\/pnas.1414592112"},{"key":"8","doi-asserted-by":"publisher","unstructured":"Fierer, N., Bradford, M.A., and Jackson, R.B. (2007) Toward an ecological classification of soil bacteria. Ecology               88: 1354\u20131364.","DOI":"10.1890\/05-1839"},{"key":"9","doi-asserted-by":"crossref","unstructured":"Gopalakrishnan, S., Srinivas, V., Sree Vidya, M., and Rathore, A. (2013) Plant growth-promoting activities of <i>Streptomyces<\/i> spp. in sorghum and rice. SpringerPlus               2: 574.","DOI":"10.1186\/2193-1801-2-574"},{"key":"10","doi-asserted-by":"crossref","unstructured":"Hirsch, A.M., and Vald\u00e9s, M. (2010) Micromonospora: an important microbe for biomedicine and potentially for biocontrol and biofuels. Soil Biol Biochem               42: 536\u2013542.","DOI":"10.1016\/j.soilbio.2009.11.023"},{"key":"11","doi-asserted-by":"crossref","unstructured":"Lin, H., and Peddada, S.D. (2024) Multigroup anal\u00adysis of compositions of microbiomes with covariate adjustments and repeated measures. Nat Methods               21: 83\u201391.","DOI":"10.1038\/s41592-023-02092-7"},{"key":"12","doi-asserted-by":"crossref","unstructured":"Ransom-Jones, E., Jones, D.L., McCarthy, A.J., and McDonald, J.E. (2012) The <i>Fibrobacteres<\/i>: an important phylum of cellulose-degrading bacteria. Microb Ecol               63: 267\u2013281.","DOI":"10.1007\/s00248-011-9998-1"},{"key":"13","doi-asserted-by":"publisher","unstructured":"Schliep, K.P. (2011) Phangorn: phylogenetic anal\u00adysis in R. Bioinformatics               27: 592\u2013593.","DOI":"10.1093\/bioinformatics\/btq706"},{"key":"14","doi-asserted-by":"crossref","unstructured":"Supriadi, Shimoura, N., Miyaji, M., Tajima, S., and Nomura, M. (2020) Diversity of the bacteria in the roots of sugarcane used to produce wasanbon in Kagawa, Japan. Plant Biotechnol (Tokyo, Jpn)               37: 99\u2013103.","DOI":"10.5511\/plantbiotechnology.20.0107a"},{"key":"15","doi-asserted-by":"crossref","unstructured":"Wright, E.S. (2015) DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment. BMC Bioinf               16: 322.","DOI":"10.1186\/s12859-015-0749-z"}],"container-title":["Microbes and Environments"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.jstage.jst.go.jp\/article\/jsme2\/41\/3\/41_ME26030\/_pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,9,5]],"date-time":"2026-09-05T04:44:20Z","timestamp":1788583460000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.jstage.jst.go.jp\/article\/jsme2\/41\/3\/41_ME26030\/_article"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026]]},"references-count":15,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2026]]}},"URL":"https:\/\/doi.org\/10.1264\/jsme2.me26030","relation":{},"ISSN":["1342-6311","1347-4405"],"issn-type":[{"value":"1342-6311","type":"print"},{"value":"1347-4405","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026]]},"article-number":"ME26030"}}