{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,12]],"date-time":"2026-05-12T10:32:01Z","timestamp":1778581921237,"version":"3.51.4"},"reference-count":10,"publisher":"F1000 Research Ltd","license":[{"start":{"date-parts":[[2020,8,20]],"date-time":"2020-08-20T00:00:00Z","timestamp":1597881600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Iridian Genomes Inc","award":["IRGEN-43853"],"award-info":[{"award-number":["IRGEN-43853"]}]}],"content-domain":{"domain":["f1000research.com"],"crossmark-restriction":false},"short-container-title":["F1000Res"],"abstract":"\n Eastern Poison Ivy (\n Toxicodendron radicans<\/ns3:italic>\n , Anacardiaceae) is well known in Eastern North America for causing contact dermatitis, an itchy and painful rash in most people who come in contact with it.\u00a0 We present the whole genome sequence and annotation of this species. A total of 96,255,779 paired-ends reads consisting of 28.9 G bases were obtained by sequencing one leaf from a wild-collected plant.\u00a0 The reads were assembled by a\n de novo<\/ns3:italic>\n method followed by alignment to related species. Annotation was performed via GenMark-ES. The raw and assembled data is publicly available via GenBank: Sequence Read Archive (\n SRR10325927<\/ns3:ext-link>\n ) and Assembly (\n GCA_009867345<\/ns3:ext-link>\n ).\n <\/ns3:p>","DOI":"10.12688\/f1000research.25556.1","type":"journal-article","created":{"date-parts":[[2020,8,20]],"date-time":"2020-08-20T11:25:32Z","timestamp":1597922732000},"page":"1015","update-policy":"https:\/\/doi.org\/10.12688\/f1000research.crossmark-policy","source":"Crossref","is-referenced-by-count":2,"title":["The complete genome sequence of Toxicodendron radicans, Eastern Poison Ivy"],"prefix":"10.12688","volume":"9","author":[{"given":"Toby","family":"Pirro","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5642-4203","authenticated-orcid":false,"given":"Stacy","family":"Pirro","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"2560","published-online":{"date-parts":[[2020,8,20]]},"reference":[{"key":"ref-1","doi-asserted-by":"publisher","DOI":"10.5281\/zenodo.3887140","article-title":"Ragtag: Reference-guided genome assembly correction and scaffolding","author":"M Alonge","year":"2020"},{"key":"ref-2","doi-asserted-by":"publisher","first-page":"455-477","DOI":"10.1089\/cmb.2012.0021","article-title":"SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing.","volume":"19","author":"A Bankevich","year":"2012","journal-title":"J Comput 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contact dermatitis to urushiol.","volume":"145","author":"R Kalish","year":"1990","journal-title":"J Immunol."},{"key":"ref-7","doi-asserted-by":"publisher","first-page":"6494-6506","DOI":"10.1093\/nar\/gki937","article-title":"Gene identification in novel eukaryotic genomes by self-training algorithm.","volume":"33","author":"A Lomsadze","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"ref-8","doi-asserted-by":"publisher","first-page":"45-50","DOI":"10.2332\/allergolint.11-RA-0324","article-title":"Recent advances in research on lacquer allergy.","volume":"61","author":"X Ma","year":"2012","journal-title":"Allergol Int."},{"key":"ref-9","doi-asserted-by":"publisher","first-page":"1002-1003","DOI":"10.1001\/archderm.135.8.1002","article-title":"Individual variations in allergic contact dermatitis from urushiol.","volume":"135","author":"J Williams","year":"1999","journal-title":"Arch 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Med."}],"container-title":["F1000Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/f1000research.com\/articles\/9-1015\/v1\/xml","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/f1000research.com\/articles\/9-1015\/v1\/pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/f1000research.com\/articles\/9-1015\/v1\/iparadigms","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,10,5]],"date-time":"2023-10-05T23:00:02Z","timestamp":1696546802000},"score":1,"resource":{"primary":{"URL":"https:\/\/f1000research.com\/articles\/9-1015\/v1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,8,20]]},"references-count":10,"URL":"https:\/\/doi.org\/10.12688\/f1000research.25556.1","relation":{"has-review":[{"id-type":"doi","id":"10.5256\/f1000research.28204.r73876","asserted-by":"subject"},{"id-type":"doi","id":"10.5256\/f1000research.28204.r87604","asserted-by":"subject"},{"id-type":"doi","id":"10.5256\/f1000research.28204.r87604","asserted-by":"object"},{"id-type":"doi","id":"10.5256\/f1000research.28204.r87603","asserted-by":"object"},{"id-type":"doi","id":"10.5256\/f1000research.28204.r73876","asserted-by":"object"}]},"ISSN":["2046-1402"],"issn-type":[{"value":"2046-1402","type":"electronic"}],"subject":[],"published":{"date-parts":[[2020,8,20]]},"assertion":[{"value":"Indexed","URL":"https:\/\/f1000research.com\/articles\/9-1015\/v1#article-reports","order":0,"name":"referee-status","label":"Referee status","group":{"name":"current-referee-status","label":"Current Referee Status"}},{"value":"10.5256\/f1000research.28204.r73876, Rongxi Sun, Jiangxi Agricultural University, Nanchang, China, 13 Nov 2020, version 1, indexed","URL":"https:\/\/f1000research.com\/articles\/9-1015\/v1#referee-response-73876","order":0,"name":"referee-response-73876","label":"Referee Report","group":{"name":"article-reports","label":"Article Reports"}},{"value":"10.5256\/f1000research.28204.r87604, Xuming Zhou, Key Laboratory of Animal Ecology and Conservation Biology, Chinese Academy of Sciences, Beijing, China, 24 Jun 2021, version 1, indexed","URL":"https:\/\/f1000research.com\/articles\/9-1015\/v1#referee-response-87604","order":1,"name":"referee-response-87604","label":"Referee Report","group":{"name":"article-reports","label":"Article Reports"}},{"value":"This study was supported by IRIDIAN GENOMES (IRGEN-43853).","order":2,"name":"grant-information","label":"Grant Information"},{"value":"This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.","order":0,"name":"copyright-info","label":"Copyright"}]}}