{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,27]],"date-time":"2026-02-27T05:12:45Z","timestamp":1772169165506,"version":"3.50.1"},"reference-count":16,"publisher":"F1000 Research Ltd","license":[{"start":{"date-parts":[[2023,1,27]],"date-time":"2023-01-27T00:00:00Z","timestamp":1674777600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100010269","name":"Wellcome Trust","doi-asserted-by":"crossref","award":["218328"],"award-info":[{"award-number":["218328"]}],"id":[{"id":"10.13039\/100010269","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/100010269","name":"Wellcome Trust","doi-asserted-by":"crossref","award":["206194"],"award-info":[{"award-number":["206194"]}],"id":[{"id":"10.13039\/100010269","id-type":"DOI","asserted-by":"crossref"}]}],"content-domain":{"domain":["wellcomeopenresearch.org"],"crossmark-restriction":false},"short-container-title":["Wellcome Open Res"],"abstract":"<ns4:p>\n                    We present a genome assembly from an individual male\n                    <ns4:italic>Acronicta psi<\/ns4:italic>\n                    <ns4:italic\/>\n                    (the Grey Dagger; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 405 megabases in span. The whole assembly is scaffolded into 31 chromosomal pseudomolecules, including the assembled Z sex chromosome. The mitochondrial genome has also been assembled and is 15.4 kilobases long.\n                  <\/ns4:p>","DOI":"10.12688\/wellcomeopenres.18711.1","type":"journal-article","created":{"date-parts":[[2023,1,27]],"date-time":"2023-01-27T09:20:07Z","timestamp":1674811207000},"page":"39","update-policy":"https:\/\/doi.org\/10.12688\/wellcomeopenres.crossmark-policy","source":"Crossref","is-referenced-by-count":0,"title":["The genome sequence of the Grey Dagger, Acronicta psi (Linnaeus, 1758)"],"prefix":"10.12688","volume":"8","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-7223-5333","authenticated-orcid":false,"given":"Gavin R.","family":"Broad","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"name":"Natural History Museum Genome Acquisition Lab","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"name":"Darwin Tree of Life Barcoding collective","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"name":"Wellcome Sanger Institute Tree of Life programme","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"name":"Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"name":"Tree of Life Core Informatics collective","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"name":"Darwin Tree of Life Consortium","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"2560","published-online":{"date-parts":[[2023,1,27]]},"reference":[{"key":"ref-1","doi-asserted-by":"publisher","first-page":"892-905","DOI":"10.1111\/1755-0998.13160","article-title":"MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics.","volume":"20","author":"R Allio","year":"2020","journal-title":"Mol Ecol Resour."},{"key":"ref-2","doi-asserted-by":"publisher","first-page":"326","DOI":"10.12688\/wellcomeopenres.17354.1","article-title":"The genome sequence of the sycamore, Acronicta aceris (Linnaeus, 1758) [version 1; peer review: 2 approved].","volume":"6","author":"D Boyes","year":"2021","journal-title":"Wellcome Open Res."},{"key":"ref-3","doi-asserted-by":"publisher","first-page":"1361-1374","DOI":"10.1534\/g3.119.400908","article-title":"BlobToolKit - Interactive Quality Assessment of Genome Assemblies.","volume":"10","author":"R Challis","year":"2020","journal-title":"G3 (Bethesda)."},{"key":"ref-4","doi-asserted-by":"publisher","first-page":"170-175","DOI":"10.1038\/s41592-020-01056-5","article-title":"Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.","volume":"18","author":"H Cheng","year":"2021","journal-title":"Nat Methods."},{"key":"ref-5","doi-asserted-by":"publisher","first-page":"2896-2898","DOI":"10.1093\/bioinformatics\/btaa025","article-title":"Identifying and removing haplotypic duplication in primary genome assemblies.","volume":"36","author":"D Guan","year":"2020","journal-title":"Bioinformatics."},{"key":"ref-6","article-title":"PretextView (Paired REad TEXTure Viewer): A desktop application for viewing pretext contact maps","author":"E Harry","year":"2022"},{"key":"ref-7","doi-asserted-by":"publisher","DOI":"10.1093\/gigascience\/giaa153","article-title":"Significantly improving the quality of genome assemblies through curation.","volume":"10","author":"K Howe","year":"2021","journal-title":"Gigascience."},{"key":"ref-8","doi-asserted-by":"publisher","first-page":"125","DOI":"10.1186\/s13059-018-1486-1","article-title":"HiGlass: web-based visual exploration and analysis of genome interaction maps.","volume":"19","author":"P Kerpedjiev","year":"2018","journal-title":"Genome Biol."},{"key":"ref-9","doi-asserted-by":"publisher","first-page":"4647-4654","DOI":"10.1093\/molbev\/msab199","article-title":"BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes.","volume":"38","author":"M Manni","year":"2021","journal-title":"Mol Biol Evol."},{"key":"ref-10","doi-asserted-by":"publisher","first-page":"1665-1680","DOI":"10.1016\/j.cell.2014.11.021","article-title":"A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.","volume":"159","author":"S Rao","year":"2014","journal-title":"Cell."},{"key":"ref-11","doi-asserted-by":"publisher","first-page":"737-746","DOI":"10.1038\/s41586-021-03451-0","article-title":"Towards complete and error-free genome assemblies of all vertebrate species.","volume":"592","author":"A Rhie","year":"2021","journal-title":"Nature."},{"key":"ref-12","doi-asserted-by":"publisher","first-page":"1560-1568","DOI":"10.1111\/j.0030-1299.2008.16725.x","article-title":"Specialization pays off: contrasting effects of two types of tannins on oak specialist and generalist moth species.","volume":"117","author":"T Roslin","year":"2008","journal-title":"Oikos."},{"key":"ref-13","article-title":"British and Irish Moths: An Illustrated Guide to Selected Difficult Species.","author":"M Townsend","year":"2011"},{"key":"ref-14","article-title":"MitoHiFi","author":"M Uliano-Silva","year":"2021"},{"key":"ref-15","article-title":"Field Guide to the Moths of Great Britain and Ireland: Third Edition.","author":"P Waring","year":"2017"},{"key":"ref-16","doi-asserted-by":"publisher","DOI":"10.1101\/2022.06.09.495093","article-title":"YaHS: yet another Hi-C scaffolding tool.","author":"C Zhou","year":"2022","journal-title":"bioRxiv."}],"container-title":["Wellcome Open Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-39\/v1\/xml","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-39\/v1\/pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-39\/v1\/iparadigms","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,6,21]],"date-time":"2023-06-21T06:30:13Z","timestamp":1687329013000},"score":1,"resource":{"primary":{"URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-39\/v1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,1,27]]},"references-count":16,"URL":"https:\/\/doi.org\/10.12688\/wellcomeopenres.18711.1","relation":{"has-review":[{"id-type":"doi","id":"10.21956\/wellcomeopenres.20749.r57409","asserted-by":"subject"},{"id-type":"doi","id":"10.21956\/wellcomeopenres.20749.r57416","asserted-by":"subject"},{"id-type":"doi","id":"10.21956\/wellcomeopenres.20749.r57416","asserted-by":"object"},{"id-type":"doi","id":"10.21956\/wellcomeopenres.20749.r57409","asserted-by":"object"}]},"ISSN":["2398-502X"],"issn-type":[{"value":"2398-502X","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,1,27]]},"assertion":[{"value":"Indexed","URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-39\/v1#article-reports","order":0,"name":"referee-status","label":"Referee status","group":{"name":"current-referee-status","label":"Current Referee Status"}},{"value":"10.21956\/wellcomeopenres.20749.r57416, Sivasankaran Kuppusamy, Entomology Research Institute, Loyola Coll\u00e8ge, Chennai, 31 May 2023, version 1, indexed","URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-39\/v1#referee-response-57416","order":0,"name":"referee-response-57416","label":"Referee Report","group":{"name":"article-reports","label":"Article Reports"}},{"value":"10.21956\/wellcomeopenres.20749.r57409, Anyi Mazo-Vargas, The George Washington University, Washington, District of Columbia, 21 Jun 2023, version 1, indexed","URL":"https:\/\/wellcomeopenresearch.org\/articles\/8-39\/v1#referee-response-57409","order":1,"name":"referee-response-57409","label":"Referee Report","group":{"name":"article-reports","label":"Article Reports"}},{"value":"This work was supported by Wellcome through core funding to the Wellcome Sanger Institute (206194, <a href=https:\/\/doi.org\/10.35802\/206194>https:\/\/doi.org\/10.35802\/206194<\/a>) and the Darwin Tree of Life Discretionary Award (218328, <a href=https:\/\/doi.org\/10.35802\/218328>https:\/\/doi.org\/10.35802\/218328<\/a>). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.","order":2,"name":"grant-information","label":"Grant Information"},{"value":"This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.","order":0,"name":"copyright-info","label":"Copyright"}]}}