{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,27]],"date-time":"2026-02-27T05:11:45Z","timestamp":1772169105182,"version":"3.50.1"},"reference-count":32,"publisher":"F1000 Research Ltd","license":[{"start":{"date-parts":[[2026,1,26]],"date-time":"2026-01-26T00:00:00Z","timestamp":1769385600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100018693","name":"Horizon Europe Framework Programme","doi-asserted-by":"publisher","award":["101059492"],"award-info":[{"award-number":["101059492"]}],"id":[{"id":"10.13039\/100018693","id-type":"DOI","asserted-by":"publisher"}]},{"name":"ATLASea: Atlas of marine genomes","award":["ANR-22-EXAT-0003-SEQ-Sea"],"award-info":[{"award-number":["ANR-22-EXAT-0003-SEQ-Sea"]}]},{"DOI":"10.13039\/100014013","name":"UK Research and Innovation","doi-asserted-by":"crossref","id":[{"id":"10.13039\/100014013","id-type":"DOI","asserted-by":"crossref"}]},{"name":"Swiss State Secretariat for Education, Research and Innovation","award":["22.00173"],"award-info":[{"award-number":["22.00173"]}]},{"name":"Swiss State Secretariat for Education, Research and Innovation","award":["24.00054"],"award-info":[{"award-number":["24.00054"]}]},{"name":"Genoscope, the Commissariat \u00e0 l'Energie Atomique et aux \u00c9nergies Alternatives (CEA), France G\u00e9nomique","award":["ANR-10-INBS-09-08"],"award-info":[{"award-number":["ANR-10-INBS-09-08"]}]}],"content-domain":{"domain":["open-research-europe.ec.europa.eu"],"crossmark-restriction":false},"short-container-title":["Open Res Europe"],"abstract":"<ns3:p>\n                    <ns3:italic>Albinaria teres<\/ns3:italic>\n                    is a small rock-dwelling terrestrial gastropod of Greece. It is a polytypic species containing ten subspecies, all endemic to the island of Crete, highlighting the high diversification which characterize the whole genus of\n                    <ns3:italic>Albinaria<\/ns3:italic>\n                    . The reference genome of\n                    <ns3:italic>Albinaria teres<\/ns3:italic>\n                    offers a crucial resource for uncovering phylogenetic relationships within the enigmatic genus of\n                    <ns3:italic>Albinaria,<\/ns3:italic>\n                    as well as for unravelling the genetic basis of its environmental adaptations. The entirety of the genome sequence was assembled into 31 contiguous chromosomal pseudomolecules. This chromosome-level assembly encompasses 1.71 Gb, composed of 418 contigs and 43 scaffolds, with contig and scaffold N50 values of 7.88 Mb and 57.6 Mb, respectively.\n                  <\/ns3:p>","DOI":"10.12688\/openreseurope.22093.1","type":"journal-article","created":{"date-parts":[[2026,1,26]],"date-time":"2026-01-26T15:19:06Z","timestamp":1769440746000},"page":"25","update-policy":"https:\/\/doi.org\/10.12688\/openreseurope.crossmark-policy","source":"Crossref","is-referenced-by-count":0,"title":["ERGA-BGE genome of Albinaria teres (Olivier, 1801): a rock-dwelling land snail endemic to the island of Crete, Greece"],"prefix":"10.12688","volume":"6","author":[{"ORCID":"https:\/\/orcid.org\/0009-0001-5397-8876","authenticated-orcid":false,"given":"Danae","family":"Karakasi","sequence":"first","affiliation":[]},{"given":"Katerina","family":"Vardinoyannis","sequence":"additional","affiliation":[]},{"given":"Giannis","family":"Bolanakis","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0009-0004-5434-0550","authenticated-orcid":false,"given":"Eleftherios","family":"Bitzilekis","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6291-9245","authenticated-orcid":false,"given":"Manos","family":"Stratakis","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5067-9600","authenticated-orcid":false,"given":"Petros","family":"Lymberakis","sequence":"additional","affiliation":[]},{"given":"Nikolaos","family":"Poulakakis","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1374-4474","authenticated-orcid":false,"given":"Rita","family":"Monteiro","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1284-3115","authenticated-orcid":false,"given":"Astrid","family":"B\u00f6hne","sequence":"additional","affiliation":[]},{"given":"Rosa","family":"Fern\u00e1ndez","sequence":"additional","affiliation":[]},{"given":"Nuria","family":"Escudero","sequence":"additional","affiliation":[]},{"name":"Genoscope Sequencing Team","sequence":"additional","affiliation":[]},{"given":"Alice","family":"Moussy","sequence":"additional","affiliation":[]},{"given":"Corinne","family":"Cruaud","sequence":"additional","affiliation":[]},{"given":"Karine","family":"Labadie","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0009-0009-9164-3311","authenticated-orcid":false,"given":"Lola","family":"Demirdjian","sequence":"additional","affiliation":[]},{"given":"Adama","family":"N\u2019dar","sequence":"additional","affiliation":[]},{"given":"Francesca Floriana","family":"Tricomi","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8843-3596","authenticated-orcid":false,"given":"Leanne","family":"Haggerty","sequence":"additional","affiliation":[]},{"given":"Fergal","family":"Martin","sequence":"additional","affiliation":[]},{"given":"Patrick","family":"Wincker","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3161-8367","authenticated-orcid":false,"given":"Pedro H","family":"Oliveira","sequence":"additional","affiliation":[]},{"given":"Jean-Marc","family":"Aury","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8293-4816","authenticated-orcid":false,"given":"Tom","family":"Brown","sequence":"additional","affiliation":[]}],"member":"2560","published-online":{"date-parts":[[2026,1,26]]},"reference":[{"key":"ref-1","doi-asserted-by":"publisher","DOI":"10.1093\/database\/baw093","article-title":"The ensembl gene annotation system.","volume":"2016","author":"B Aken","year":"2016","journal-title":"Database (Oxford)."},{"key":"ref-2","doi-asserted-by":"publisher","first-page":"439-460","DOI":"10.1093\/sysbio\/syab050","article-title":"Evaluating species delimitation methods in radiations: the land snail Albinaria cretensis complex on Crete.","volume":"71","author":"S Bamberger","year":"2022","journal-title":"Syst Biol."},{"key":"ref-3","doi-asserted-by":"publisher","DOI":"10.1093\/zoolinnean\/zlae061","article-title":"Phylogeny and species delimitation in Albinaria from western Crete (Gastropoda: Clausiliidae).","volume":"203","author":"E Becher","year":"2024","journal-title":"Zool J Linn Soc."},{"key":"ref-4","doi-asserted-by":"publisher","DOI":"10.48546\/WORKFLOWHUB.WORKFLOW.1096.1","article-title":"ERGA-BGE genome report ANNOT analyses.","author":"D De Panis","year":"2024a"},{"key":"ref-5","doi-asserted-by":"publisher","DOI":"10.48546\/WORKFLOWHUB.WORKFLOW.1104.1","article-title":"ERGA-BGE genome report ASM analyses (one-asm HiFi + HiC).","author":"D De Panis","year":"2024b"},{"key":"ref-6","doi-asserted-by":"publisher","first-page":"531-542","DOI":"10.1111\/j.1096-3642.2005.00154.x","article-title":"Towards a monophyletic genus Albinaria (Gastropoda, Pulmonata): the first molecular study into the phylogenetic position of eastern Albinaria species.","volume":"143","author":"D De Weerd","year":"2005","journal-title":"Zool J Linn Soc."},{"key":"ref-7","doi-asserted-by":"publisher","first-page":"414-426","DOI":"10.1080\/14772000.2016.1271368","article-title":"Inferring phylogenetic patterns of land snails of the genus Albinaria on the Island of Dia (Crete, Greece).","volume":"15","author":"A Dimopoulou","year":"2017","journal-title":"Syst Biodivers."},{"key":"ref-8","doi-asserted-by":"publisher","first-page":"116-125","DOI":"10.2307\/2410926","article-title":"Mitochondrial phylogeography of the land snail Albinaria in Crete: long-term geological and short-term vicariance effects.","volume":"52","author":"V Douris","year":"1998a","journal-title":"Evolution."},{"key":"ref-9","doi-asserted-by":"publisher","first-page":"81-92","DOI":"10.1093\/mollus\/64.1.81","article-title":"Phylogenetic analysis of mitochondrial DNA and morphological characters suggest a need for taxonomic re-evaluation within the alopiinae (Gastropoda: Clausiliidae).","volume":"64","author":"V Douris","year":"1998b","journal-title":"J Molluscan Stud."},{"key":"ref-10","doi-asserted-by":"publisher","first-page":"65-78","DOI":"10.1093\/mollus\/61.1.65","article-title":"Mitochondrial DNA and morphological differentiation of Albinaria populations (gastropoda: clausiliidae).","volume":"61","author":"V Douris","year":"1995","journal-title":"J Molluscan Stud."},{"key":"ref-12","doi-asserted-by":"publisher","first-page":"755-770","DOI":"10.1111\/j.1095-8312.2000.tb01289.x","article-title":"Gene flow and differential mortality in a contact zone between two Albinaria species (Gastropoda; Clausiliidae).","volume":"71","author":"S Giokas","year":"2000","journal-title":"Biol J Linn Soc."},{"key":"ref-13","doi-asserted-by":"publisher","first-page":"263-272","DOI":"10.1111\/j.1095-8312.1991.tb00598.x","article-title":"What about non-adaptive radiation?","volume":"43","author":"E Gittenberger","year":"1991","journal-title":"Biol J Linn Soc."},{"key":"ref-14","doi-asserted-by":"publisher","first-page":"W70-W74","DOI":"10.1093\/nar\/gkn188","article-title":"The Vienna RNA Websuite.","volume":"36","author":"A Gruber","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"ref-15","doi-asserted-by":"publisher","first-page":"e51","DOI":"10.1002\/cpbi.51","article-title":"Non-coding RNA analysis using the Rfam database.","volume":"62","author":"I Kalvari","year":"2018","journal-title":"Curr Protoc Bioinformatics."},{"key":"ref-16","doi-asserted-by":"publisher","first-page":"603-611","DOI":"10.1111\/zsc.12125","article-title":"Multiple reversals of chirality in the land snail genus Albinaria (Gastropoda, Clausiliidae).","volume":"44","author":"P Kornilios","year":"2015","journal-title":"Zoologica Scripta."},{"key":"ref-17","doi-asserted-by":"publisher","first-page":"D155-D162","DOI":"10.1093\/nar\/gky1141","article-title":"miRBase: from microRNA sequences to function.","volume":"47","author":"A Kozomara","year":"2019","journal-title":"Nucleic Acids Res."},{"key":"ref-18","doi-asserted-by":"publisher","first-page":"3094-3100","DOI":"10.1093\/bioinformatics\/bty191","article-title":"Minimap2: pairwise alignment for nucleotide sequences.","volume":"34","author":"H Li","year":"2018","journal-title":"Bioinformatics."},{"key":"ref-19","doi-asserted-by":"publisher","first-page":"4647-4654","DOI":"10.1093\/molbev\/msab199","article-title":"BUSCo update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes.","volume":"38","author":"M Manni","year":"2021","journal-title":"Mol Biol Evol."},{"key":"ref-20","doi-asserted-by":"publisher","first-page":"252","DOI":"10.1038\/d41586-023-02229-w","article-title":"Biodiversity: an atlas of European reference genomes.","volume":"619","author":"C Mazzoni","year":"2023","journal-title":"Nature."},{"key":"ref-21","article-title":"MolluscaBase","year":"2025"},{"key":"ref-22","doi-asserted-by":"publisher","first-page":"2933-2935","DOI":"10.1093\/bioinformatics\/btt509","article-title":"Infernal 1.1: 100-fold faster RNA homology searches.","volume":"29","author":"E Nawrocki","year":"2013","journal-title":"Bioinformatics."},{"key":"ref-23","article-title":"Greek Red List","year":"2023"},{"key":"ref-24","first-page":"345-352","article-title":"Higher than anticipated diversity within an Albinaria species (Gastropoda, Pulmonata, Clausiliidae) in southern Turkey.","volume":"18","author":"B P\u00e1ll-Gergely","year":"2012","journal-title":"Journal of Biological Research-Thessaloniki."},{"key":"ref-25","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-020-02134-9","article-title":"Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies.","volume":"21","author":"A Rhie","year":"2020","journal-title":"Genome Biol."},{"key":"ref-26","doi-asserted-by":"publisher","first-page":"301-312","DOI":"10.1093\/oso\/9780198549802.003.0026","article-title":"Allozyme variation in some cretan albinaria (Gastropoda): paraphyletic species as natural phenomena","author":"M Schilthuizen","year":"1995"},{"key":"ref-27","doi-asserted-by":"publisher","first-page":"457-462","DOI":"10.1006\/mpev.1995.1042","article-title":"Phylogenetic Relationships Inferred from the Sequence and Secondary Structure of ITS1 rRNA in Albinaria and Putative Isabellaria Species (Gastropoda, Pulmonata, Clausiliidae).","volume":"4","author":"M Schilthuizen","year":"1995","journal-title":"molecular phylogenetics and evolution."},{"key":"ref-28","doi-asserted-by":"publisher","first-page":"317-326","DOI":"10.1111\/j.1095-8312.2004.00391.x","article-title":"Phylogeography of the land snail Albinaria hippolyti (Pulmonata: Clausiliidae) from Crete, inferred from ITS-1 sequences: PHYLOGEOGRAPHY OF A GREEK LAND SNAIL.","volume":"83","author":"M Schilthuizen","year":"2004","journal-title":"Biol J Linn Soc."},{"key":"ref-29","first-page":"137-157","article-title":"A revision of the polytypic Albinaria hippolyti (Boettger, 1878) from Crete (Gastropoda Pulmonata: Clausiliidae).","volume":"67","author":"M Schilthuizen","year":"1993","journal-title":"Zoologische Mededelingen."},{"key":"ref-30","article-title":"IUCN Red List of Threatened Species: Albinaria teres.","author":"K Triantis","year":"2023","journal-title":"IUCN Red List of Threatened Species."},{"key":"ref-32","doi-asserted-by":"publisher","first-page":"D506-D515","DOI":"10.1093\/nar\/gky1049","article-title":"UniProt: a worldwide hub of protein knowledge.","volume":"47","year":"2019","journal-title":"Nucleic Acids Research."},{"key":"ref-33","doi-asserted-by":"publisher","first-page":"200-208","DOI":"10.1006\/mpev.2000.0826","article-title":"Molecular evidence for repetitive parallel evolution of shell structure in clausiliidae (Gastropoda, Pulmonata).","volume":"17","author":"C Van Moorsel","year":"2000","journal-title":"Mol Phylogenet Evol."},{"key":"ref-34","doi-asserted-by":"publisher","first-page":"143-245","DOI":"10.1127\/arch.moll\/1869-0963\/139\/143-245","article-title":"Revision of the genus Albinaria in Crete (Greece): presence of geographically variable monotypic and polytypic species (Gastropoda: Clausiliidae).","volume":"139","author":"F Welter-Schultes","year":"2010","journal-title":"Archiv F\u00fcr Molluskenkunde International Journal of Malacology."}],"container-title":["Open Research Europe"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/open-research-europe.ec.europa.eu\/articles\/6-25\/v1\/xml","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/open-research-europe.ec.europa.eu\/articles\/6-25\/v1\/pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/open-research-europe.ec.europa.eu\/articles\/6-25\/v1\/iparadigms","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T08:44:09Z","timestamp":1772095449000},"score":1,"resource":{"primary":{"URL":"https:\/\/open-research-europe.ec.europa.eu\/articles\/6-25\/v1"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,1,26]]},"references-count":32,"URL":"https:\/\/doi.org\/10.12688\/openreseurope.22093.1","relation":{"has-review":[{"id-type":"doi","id":"10.21956\/openreseurope.23909.r68961","asserted-by":"subject"},{"id-type":"doi","id":"10.21956\/openreseurope.23909.r68957","asserted-by":"subject"},{"id-type":"doi","id":"10.21956\/openreseurope.23909.r68957","asserted-by":"object"},{"id-type":"doi","id":"10.21956\/openreseurope.23909.r68961","asserted-by":"object"}]},"ISSN":["2732-5121"],"issn-type":[{"value":"2732-5121","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,1,26]]},"assertion":[{"value":"Approved with reservations, Approved with reservations","URL":"https:\/\/open-research-europe.ec.europa.eu\/articles\/6-25\/v1#article-reports","order":0,"name":"referee-status","label":"Referee status","group":{"name":"current-referee-status","label":"Current Referee Status"}},{"value":"10.21956\/openreseurope.23909.r68957, Maurine Neiman, Srivarshini Saravanakumar, University of Iowa, Iowa City, Iowa, 10 Feb 2026, version 1, 2 approved with reservations","URL":"https:\/\/open-research-europe.ec.europa.eu\/articles\/6-25\/v1#referee-response-68957","order":0,"name":"referee-response-68957","label":"Referee Report","group":{"name":"article-reports","label":"Article Reports"}},{"value":"10.21956\/openreseurope.23909.r68961, Yasuto ISHII, Tohoku University, Sendai, 26 Feb 2026, version 1, 2 approved with reservations","URL":"https:\/\/open-research-europe.ec.europa.eu\/articles\/6-25\/v1#referee-response-68961","order":1,"name":"referee-response-68961","label":"Referee Report","group":{"name":"article-reports","label":"Article Reports"}},{"value":"This project received funding from Horizon Europe under the Biodiversity, Circular Economy and Environment (REA.B.3); co-funded by the Swiss State Secretariat for Education, Research and Innovation (SERI) under contract numbers 22.00173 and 24.00054; and by the UK Research and Innovation (UKRI) under the Department for Business, Energy and Industrial Strategy\u2019s Horizon Europe Guarantee Scheme. This work was supported by the Genoscope, the Commissariat \u00e0 l'Energie Atomique et aux \u00c9nergies Alternatives (CEA), France G\u00e9nomique (ANR-10-INBS-09-08) and the exploratory research programme \u201cATLASea: Atlas of marine genomes\u201d and its targeted project SEQ-Sea (ANR-22-EXAT-0003-SEQ-Sea). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.","order":2,"name":"grant-information","label":"Grant Information"},{"value":"This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.","order":0,"name":"copyright-info","label":"Copyright"}]}}