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Doublet,                B., Butaye,                P.,                Imberechts,              H., Collard,                J. M.,                Chaslus-Dancla,              E. and                Cloeckaert,              A.          2004. <i>Salmonella<\/i> agona harboring genomic            island 1-A. <i>Emerg. Infect. Dis.<\/i>          10: 756\u2013758.","DOI":"10.3201\/eid1004.030417"},{"key":"2","doi-asserted-by":"crossref","unstructured":"2. Haubold,                B. and                Hudson, R.              R.          2000. LIAN 3.0: detecting linkage disequilibrium in multilocus            data. Linkage Analysis. <i>Bioinformatics<\/i>          16: 847\u2013848.","DOI":"10.1093\/bioinformatics\/16.9.847"},{"key":"3","doi-asserted-by":"crossref","unstructured":"3. Huson, D.                H. and Bryant,                D.          2006. Application of phylogenetic networks in evolutionary            studies. <i>Mol. Biol. Evol.<\/i>          23: 254\u2013267.","DOI":"10.1093\/molbev\/msj030"},{"key":"4","unstructured":"4. Kawamura,                M.,              Shibata, M.,                Takahashi,              M., Yokoyama,                K.,                Matsushita,              S., Nakama,                A. and Kai,                A.          2009. Serovar distribution of <i>Salmonella<\/i>            isolated from domestic and imported cases from 2000 to 2008 in Tokyo.              <i>Ann. Rep. Tokyo Metr. Inst. Pub. Health<\/i>          60: 39\u201344 (in          Japanese)."},{"key":"5","unstructured":"5. Kobayashi,                T.,                Takahashi,              E., Yatsu,                J. and                Saito,            N.          2008. Serovars and drug susceptibility of              <i>Salmonella<\/i> strain isolated from human in Miyagi            (2005\u20132007). <i>Ann. Rep. Miyagi Pref. Inst. Pub. Health              Environ.<\/i>          26: 44\u201347 (in          Japanese)."},{"key":"6","unstructured":"6. Kurazono,                T.,                Matsushita,              A., Sunaoshi,                K. and              Aoki,            A.          2017. Serovars and antimicrobial sensitivity of              <i>Salmonella<\/i> isolated from human sources in Saitama Prefecture            (2016). <i>Ann. Rep. Saitama Pref. Inst. Pub.              Health<\/i>          51: 61\u201362 (in          Japanese)."},{"key":"7","doi-asserted-by":"crossref","unstructured":"7. Morse, S.                S.          1995. Factors in the emergence of infectious            diseases. <i>Emerg. Infect. Dis.<\/i>          1: 7\u201315.","DOI":"10.3201\/eid0101.950102"},{"key":"8","unstructured":"8. Murakami,                S., Seki,                M., Suzuki,                Y., Takano,                A., Suzuki,                K.,              Okazaki, M.,                Kobayashi,              T., Torii,                Y.,                Fujimaki,              T. and                Yokoyama,              E.          2016. Investigation of <i>Salmonella<\/i> Agona            colonized in broiler chickens and <i>Salmonella<\/i> contamination in minced            chicken. <i>J. Jpn. Soc. Poult. Dis.<\/i>          52: 180\u2013184 (in          Japanese)."},{"key":"9","doi-asserted-by":"crossref","unstructured":"9. Sasaki,              Y., Ikeda,                A.,                Ishikawa,              K., Murakami,                M.,                Kusukawa,              M., Asai,                T. and                Yamada,            Y.          2012. Prevalence and antimicrobial susceptibility of            Salmonella in Japanese broiler flocks. <i>Epidemiol.              Infect.<\/i>          140: 2074\u20132081.","DOI":"10.1017\/S0950268812000039"},{"key":"10","doi-asserted-by":"crossref","unstructured":"10. Tamura,              K., Stecher,                G.,                Peterson,              D., Filipski,                A. and                Kumar,            S.          2013. MEGA6: molecular evolutionary genetics analysis version            6.0. <i>Mol. Biol. Evol.<\/i>          30: 2725\u20132729.","DOI":"10.1093\/molbev\/mst197"},{"key":"11","doi-asserted-by":"crossref","unstructured":"11. Yokoyama,                E.,                Maruyama,              S., Kabeya,                H., Hara,                S., Sata,                S., Kuroki,                T. and                Yamamoto,              T.          2007. Prevalence and genetic properties of <i>Salmonella              enterica<\/i> serovar typhimurium definitive phage type 104 isolated from              <i>Rattus norvegicus<\/i> and <i>Rattus rattus<\/i> house rats in            Yokohama City, Japan. <i>Appl. Environ.            Microbiol.<\/i>          73: 2624\u20132630.","DOI":"10.1128\/AEM.02465-06"},{"key":"12","doi-asserted-by":"crossref","unstructured":"12. Yokoyama,                E., Torii,                Y.,                Shigemura,              H., Ishige,                T.,                Yanagimoto,              K., Uematsu,                K., Ando,                N. and                Murakami,              S.          2019. Isolation of <i>Salmonella enterica<\/i>            serovar Agona strains and their similarities to strains derived from a clone caused a            serovar shift in broilers. <i>J. Infect.              Chemother.<\/i>          25: 71\u201374.","DOI":"10.1016\/j.jiac.2018.07.003"},{"key":"13","unstructured":"13. Zhou,              Z., McCann,                A., Litrup,                E., Murphy,                R.,                Cormican,              M., Fanning,                S., Brown,                D.,              Guttman, D.              S., Brisse,                S. and                Achtman,            M.          2013. Neutral genomic microevolution of a recently emerged            pathogen, <i>Salmonella enterica<\/i> serovar Agona.              <i>PLoS Genet.<\/i>          9: e1003471."}],"container-title":["Journal of Veterinary Medical Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/www.jstage.jst.go.jp\/article\/jvms\/81\/8\/81_18-0522\/_pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,8,9]],"date-time":"2019-08-09T23:19:20Z","timestamp":1565392760000},"score":1,"resource":{"primary":{"URL":"https:\/\/www.jstage.jst.go.jp\/article\/jvms\/81\/8\/81_18-0522\/_article"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019]]},"references-count":13,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2019]]}},"URL":"https:\/\/doi.org\/10.1292\/jvms.18-0522","relation":{},"ISSN":["0916-7250","1347-7439"],"issn-type":[{"value":"0916-7250","type":"print"},{"value":"1347-7439","type":"electronic"}],"subject":[],"published":{"date-parts":[[2019]]}}}