{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,7]],"date-time":"2026-04-07T11:19:39Z","timestamp":1775560779650,"version":"3.50.1"},"reference-count":15,"publisher":"Public Library of Science (PLoS)","issue":"8","license":[{"start":{"date-parts":[[2009,8,21]],"date-time":"2009-08-21T00:00:00Z","timestamp":1250812800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"DOI":"10.1371\/journal.pcbi.1000475","type":"journal-article","created":{"date-parts":[[2009,8,20]],"date-time":"2009-08-20T21:19:51Z","timestamp":1250803191000},"page":"e1000475","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":127,"title":["Accurate Prediction of DnaK-Peptide Binding via Homology Modelling and Experimental Data"],"prefix":"10.1371","volume":"5","author":[{"given":"Joost","family":"Van Durme","sequence":"first","affiliation":[]},{"given":"Sebastian","family":"Maurer-Stroh","sequence":"additional","affiliation":[]},{"given":"Rodrigo","family":"Gallardo","sequence":"additional","affiliation":[]},{"given":"Hannah","family":"Wilkinson","sequence":"additional","affiliation":[]},{"given":"Frederic","family":"Rousseau","sequence":"additional","affiliation":[]},{"given":"Joost","family":"Schymkowitz","sequence":"additional","affiliation":[]}],"member":"340","published-online":{"date-parts":[[2009,8,21]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"670","DOI":"10.1007\/s00018-004-4464-6","article-title":"Hsp70 chaperones: cellular functions and molecular mechanism.","volume":"62","author":"MP Mayer","year":"2005","journal-title":"Cell Mol Life Sci"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"1852","DOI":"10.1126\/science.1068408","article-title":"Molecular chaperones in the cytosol: from nascent chain to folded protein.","volume":"295","author":"FU Hartl","year":"2002","journal-title":"Science"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"1501","DOI":"10.1093\/emboj\/16.7.1501","article-title":"Substrate specificity of the DnaK chaperone determined by screening cellulose-bound peptide libraries.","volume":"16","author":"S Rudiger","year":"1997","journal-title":"EMBO J"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"5041","DOI":"10.1073\/pnas.88.11.5041","article-title":"Similarity of the three-dimensional structures of actin and the ATPase fragment of a 70-kDa heat shock cognate protein.","volume":"88","author":"KM Flaherty","year":"1991","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"1606","DOI":"10.1126\/science.272.5268.1606","article-title":"Structural analysis of substrate binding by the molecular chaperone DnaK.","volume":"272","author":"X Zhu","year":"1996","journal-title":"Science"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"10345","DOI":"10.1073\/pnas.91.22.10345","article-title":"The ATP hydrolysis-dependent reaction cycle of the Escherichia coli Hsp70 system DnaK, DnaJ, and GrpE.","volume":"91","author":"A Szabo","year":"1994","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"1042","DOI":"10.1093\/emboj\/20.5.1042","article-title":"Its substrate specificity characterizes the DnaJ co-chaperone as a scanning factor for the DnaK chaperone.","volume":"20","author":"S Rudiger","year":"2001","journal-title":"EMBO J"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"e16","DOI":"10.1093\/bioinformatics\/btl216","article-title":"DynaPred: a structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations.","volume":"22","author":"I Antes","year":"2006","journal-title":"Bioinformatics"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"313","DOI":"10.1006\/jmbi.2000.3670","article-title":"SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family.","volume":"298","author":"B Brannetti","year":"2000","journal-title":"J Mol Biol"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"W382","DOI":"10.1093\/nar\/gki387","article-title":"The FoldX web server: an online force field.","volume":"33","author":"J Schymkowitz","year":"2005","journal-title":"Nucleic Acids Res"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"1302","DOI":"10.1038\/nbt1012","article-title":"Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins.","volume":"22","author":"AM Fernandez-Escamilla","year":"2004","journal-title":"Nat Biotechnol"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"829","DOI":"10.1006\/jmbi.1996.0129","article-title":"Regulatory region C of the E. coli heat shock transcription factor, sigma32, constitutes a DnaK binding site and is conserved among eubacteria.","volume":"256","author":"JS McCarty","year":"1996","journal-title":"J Mol Biol"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"365","DOI":"10.1093\/nar\/gkg095","article-title":"The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.","volume":"31","author":"B Boeckmann","year":"2003","journal-title":"Nucleic Acids Res"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"848","DOI":"10.1006\/jmbi.1994.1043","article-title":"Specificity of DnaK-peptide binding.","volume":"235","author":"A Gragerov","year":"1994","journal-title":"J Mol Biol"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"2588","DOI":"10.1110\/ps.03269103","article-title":"The solution structure of the bacterial HSP70 chaperone protein domain DnaK(393\u2013507) in complex with the peptide NRLLLTG.","volume":"12","author":"SY Stevens","year":"2003","journal-title":"Protein Sci"}],"container-title":["PLoS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pcbi.1000475","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,10,23]],"date-time":"2018-10-23T00:58:01Z","timestamp":1540256281000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1000475"}},"subtitle":[],"editor":[{"given":"Anna","family":"Tramontano","sequence":"first","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2009,8,21]]},"references-count":15,"journal-issue":{"issue":"8","published-online":{"date-parts":[[2009,8,21]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1000475","relation":{},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2009,8,21]]}}}