{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,28]],"date-time":"2026-01-28T03:11:41Z","timestamp":1769569901940,"version":"3.49.0"},"reference-count":29,"publisher":"Public Library of Science (PLoS)","issue":"12","license":[{"start":{"date-parts":[[2009,12,4]],"date-time":"2009-12-04T00:00:00Z","timestamp":1259884800000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"DOI":"10.1371\/journal.pcbi.1000584","type":"journal-article","created":{"date-parts":[[2009,12,4]],"date-time":"2009-12-04T00:18:04Z","timestamp":1259885884000},"page":"e1000584","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":40,"title":["Defining an Essence of Structure Determining Residue Contacts in Proteins"],"prefix":"10.1371","volume":"5","author":[{"given":"R.","family":"Sathyapriya","sequence":"first","affiliation":[]},{"given":"Jose M.","family":"Duarte","sequence":"additional","affiliation":[]},{"given":"Henning","family":"Stehr","sequence":"additional","affiliation":[]},{"given":"Ioannis","family":"Filippis","sequence":"additional","affiliation":[]},{"given":"Michael","family":"Lappe","sequence":"additional","affiliation":[]}],"member":"340","published-online":{"date-parts":[[2009,12,4]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"1313","DOI":"10.1093\/bioinformatics\/btn115","article-title":"FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps.","volume":"24","author":"M Vassura","year":"2008","journal-title":"Bioinformatics"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"295","DOI":"10.1016\/S1359-0278(97)00041-2","article-title":"Recovery of protein structure from contact maps.","volume":"2","author":"M Vendruscolo","year":"1997","journal-title":"Fold Des"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1093\/protein\/gzi070","article-title":"Modelling the structure of latexin-carboxypeptidase A complex based on chemical cross-linking and molecular docking.","volume":"19","author":"D Mouradov","year":"2006","journal-title":"Protein Eng Des Sel"},{"key":"ref4","article-title":"BiPS, a photo-cleavable, isotopically-coded, fluorescent crosslinker for structural proteomics.","author":"EV Petrotchenko","year":"2008","journal-title":"Mol Cell Proteomics"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"181","DOI":"10.1016\/j.str.2007.11.015","article-title":"De novo high-resolution protein structure determination from sparse spin-labeling EPR data.","volume":"16","author":"N Alexander","year":"2008","journal-title":"Structure"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"5802","DOI":"10.1073\/pnas.090099097","article-title":"High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry.","volume":"97","author":"MM Young","year":"2000","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"308","DOI":"10.1006\/jmbi.1995.0436","article-title":"Global fold determination from a small number of distance restraints.","volume":"251","author":"A Aszodi","year":"1995","journal-title":"J Mol Biol"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"2032","DOI":"10.1110\/ps.0386903","article-title":"Discrete restraint-based protein modeling and the Calpha-trace problem.","volume":"12","author":"MA DePristo","year":"2003","journal-title":"Protein Sci"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1186\/1472-6807-8-7","article-title":"Comparative modelling by restraint-based conformational sampling.","volume":"8","author":"N Furnham","year":"2008","journal-title":"BMC Struct Biol"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"094101","DOI":"10.1063\/1.2968605","article-title":"Generating properly weighted ensemble of conformations of proteins from sparse or indirect distance constraints.","volume":"129","author":"M Lin","year":"2008","journal-title":"J Chem Phys"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1006\/jmbi.1996.0720","article-title":"MONSSTER: a method for folding globular proteins with a small number of distance restraints.","volume":"265","author":"J Skolnick","year":"1997","journal-title":"J Mol Biol"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"605","DOI":"10.1093\/protein\/6.6.605","article-title":"Global folding of proteins using a limited number of distance constraints.","volume":"6","author":"MJ Smith-Brown","year":"1993","journal-title":"Protein Eng"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"47","DOI":"10.1016\/j.gene.2008.06.004","article-title":"A stochastic method for the reconstruction of protein structures from one-dimensional structural profiles.","volume":"422","author":"K Wolff","year":"2008","journal-title":"Gene"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1109\/TCBB.2008.27","article-title":"Reconstruction of 3D structures from protein contact maps.","volume":"5","author":"M Vassura","year":"2008","journal-title":"IEEE\/ACM Trans Comput Biol Bioinform"},{"key":"ref15","article-title":"Distance Geometry and Molecular Conformation.","author":"GH Crippen","year":"1988"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"7432","DOI":"10.1021\/jp068963t","article-title":"Fidelity of the protein structure reconstruction from inter-residue proximity constraints.","volume":"111","author":"Y Chen","year":"2007","journal-title":"J Phys Chem B"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"218101","DOI":"10.1103\/PhysRevLett.92.218101","article-title":"Reconstruction of protein structures from a vectorial representation.","volume":"92","author":"M Porto","year":"2004","journal-title":"Phys Rev Lett"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"1760","DOI":"10.1093\/bioinformatics\/btm257","article-title":"Assortative mixing in Protein Contact Networks and protein folding kinetics.","volume":"23","author":"G Bagler","year":"2007","journal-title":"Bioinformatics"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1016\/j.pbiomolbio.2003.09.003","article-title":"Inter-residue interactions in protein folding and stability.","volume":"86","author":"MM Gromiha","year":"2004","journal-title":"Prog Biophys Mol Biol"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1038\/35011000","article-title":"A surprising simplicity to protein folding.","volume":"405","author":"D Baker","year":"2000","journal-title":"Nature"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"1937","DOI":"10.1110\/ps.3790102","article-title":"Contact order and ab initio protein structure prediction.","volume":"11","author":"R Bonneau","year":"2002","journal-title":"Protein Sci"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1088\/0965-0393\/15\/3\/010","article-title":"Common Neighbour Analysis for binary systems.","volume":"15","author":"N Luemmen","year":"2007","journal-title":"Modelling and Simulation in Material Science and Engineering"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"518","DOI":"10.1016\/j.cpc.2007.05.018","article-title":"Structural characterization of deformed crystals by analysis of common atomic neighborhood","author":"H Tsusuki","year":"2007","journal-title":"Computer Physics Communications."},{"key":"ref24","doi-asserted-by":"crossref","first-page":"500","DOI":"10.1002\/prot.21227","article-title":"Relative tolerance of mesostable and thermostable protein homologs to extensive mutation.","volume":"66","author":"W Besenmatter","year":"2007","journal-title":"Proteins"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"13489","DOI":"10.1021\/bi801108a","article-title":"Relative tolerance of an enzymatic molten globule and its thermostable counterpart to point mutation.","volume":"47","author":"KJ Woycechowsky","year":"2008","journal-title":"Biochemistry"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1186\/1741-7007-5-29","article-title":"Evolution favors protein mutational robustness in sufficiently large populations.","volume":"5","author":"JD Bloom","year":"2007","journal-title":"BMC Biol"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"536","DOI":"10.1016\/S0022-2836(05)80134-2","article-title":"SCOP: a structural classification of proteins database for the investigation of sequences and structures.","volume":"247","author":"AG Murzin","year":"1995","journal-title":"J Mol Biol"},{"key":"ref28","article-title":"Software Tools for Molecular Design, User&apos;s Guide for Version 4.2.","author":"JW Ponder","year":"2004"},{"key":"ref29","article-title":"The PyMOL Molecular Graphics System.","author":"WL Delano","year":"2002"}],"container-title":["PLoS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pcbi.1000584","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,10,22]],"date-time":"2018-10-22T19:33:14Z","timestamp":1540236794000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1000584"}},"subtitle":[],"editor":[{"given":"Ruth","family":"Nussinov","sequence":"first","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2009,12,4]]},"references-count":29,"journal-issue":{"issue":"12","published-online":{"date-parts":[[2009,12,4]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1000584","relation":{},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2009,12,4]]}}}