{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,21]],"date-time":"2026-07-21T22:20:36Z","timestamp":1784672436736,"version":"3.55.0"},"reference-count":91,"publisher":"Public Library of Science (PLoS)","issue":"5","license":[{"start":{"date-parts":[[2012,5,31]],"date-time":"2012-05-31T00:00:00Z","timestamp":1338422400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"DOI":"10.1371\/journal.pcbi.1002495","type":"journal-article","created":{"date-parts":[[2012,5,31]],"date-time":"2012-05-31T21:03:48Z","timestamp":1338498228000},"page":"e1002495","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":57,"title":["Simulation of Molecular Data under Diverse Evolutionary Scenarios"],"prefix":"10.1371","volume":"8","author":[{"given":"Miguel","family":"Arenas","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2012,5,31]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"530","DOI":"10.1016\/j.tree.2004.07.019","article-title":"Simulation as experiment: a philosophical reassessment for biological modeling.","volume":"19","author":"SL Peck","year":"2004","journal-title":"Trends Ecol Evol"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"1004","DOI":"10.1111\/j.0014-3820.2006.tb01178.x","article-title":"Using coalescent simulations to test the impact of quaternary climate cycles on divergence in an alpine plant-insect association.","volume":"60","author":"EG DeChaine","year":"2006","journal-title":"Evolution"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"817","DOI":"10.1093\/molbev\/msj102","article-title":"Recombination estimation under complex evolutionary models with the coalescent composite-likelihood method.","volume":"23","author":"A Carvajal-Rodriguez","year":"2006","journal-title":"Mol Biol Evol"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"2517","DOI":"10.1093\/molbev\/msn219","article-title":"Characterization of reticulate networks based on the coalescent with recombination.","volume":"25","author":"M Arenas","year":"2008","journal-title":"Mol Biol Evol"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"e1000318","DOI":"10.1371\/journal.pcbi.1000318","article-title":"Accurate detection of recombinant breakpoints in whole-genome alignments.","volume":"5","author":"O Westesson","year":"2009","journal-title":"PLoS Comput Biol"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1017\/S0016672300010156","article-title":"The effect of linkage on limits to artificial selection.","volume":"8","author":"WG Hill","year":"1966","journal-title":"Genet Res"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"2025","DOI":"10.1093\/genetics\/162.4.2025","article-title":"Approximate Bayesian computation in population genetics.","volume":"162","author":"MA Beaumont","year":"2002","journal-title":"Genetics"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"429","DOI":"10.1534\/genetics.109.109736","article-title":"Coalescent simulation of intracodon recombination.","volume":"184","author":"M Arenas","year":"2010","journal-title":"Genetics"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"2993","DOI":"10.1093\/bioinformatics\/btq579","article-title":"SPLATCHE2: a spatially explicit simulation framework for complex demography, genetic admixture and recombination.","volume":"26","author":"N Ray","year":"2010","journal-title":"Bioinformatics"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"1332","DOI":"10.1093\/bioinformatics\/btr124","article-title":"fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios.","volume":"27","author":"L Excoffier","year":"2011","journal-title":"Bioinformatics"},{"key":"ref11","doi-asserted-by":"crossref","DOI":"10.1093\/acprof:oso\/9780198567028.001.0001","article-title":"Computational molecular evolution","author":"Z Yang","year":"2006"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"1879","DOI":"10.1093\/molbev\/msp098","article-title":"INDELible: a flexible simulator of biological sequence evolution.","volume":"26","author":"W Fletcher","year":"2009","journal-title":"Mol Biol Evol"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"155","DOI":"10.2174\/138920208784340759","article-title":"Simulation of genomes: a review.","volume":"9","author":"A Carvajal-Rodriguez","year":"2008","journal-title":"Curr Genomics"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"58","DOI":"10.2174\/138920210790218007","article-title":"Simulation of genes and genomes forward in time.","volume":"11","author":"A Carvajal-Rodriguez","year":"2010","journal-title":"Curr Genomics"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1186\/1479-7364-3-1-79","article-title":"A survey of genetic simulation software for population and epidemiological studies.","volume":"3","author":"Y Liu","year":"2008","journal-title":"Hum Genomics"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"110","DOI":"10.1038\/nrg3130","article-title":"Computer simulations: tools for population and evolutionary genetics.","volume":"13","author":"S Hoban","year":"2012","journal-title":"Nat Rev Genet"},{"key":"ref17","first-page":"126","article-title":"Simulation of coding sequence evolution.","author":"M Arenas","year":"2012"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"223","DOI":"10.1186\/1471-2105-9-223","article-title":"GENOMEPOP: a program to simulate genomes in populations.","volume":"9","author":"A Carvajal-Rodriguez","year":"2008","journal-title":"BMC Bioinformatics"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"2786","DOI":"10.1093\/bioinformatics\/btn522","article-title":"A flexible forward simulator for populations subject to selection and demography.","volume":"24","author":"RD Hernandez","year":"2008","journal-title":"Bioinformatics"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"583","DOI":"10.1111\/j.1471-8286.2006.01300.x","article-title":"AQUASPLATCHE: a program to simulate genetic diversity in populations living in linear habitats.","volume":"6","author":"S Neuenschwander","year":"2006","journal-title":"Mol Ecol Notes"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"3686","DOI":"10.1093\/bioinformatics\/bti584","article-title":"simuPOP: a forward-time population genetics simulation environment.","volume":"21","author":"B Peng","year":"2005","journal-title":"Bioinformatics"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"896","DOI":"10.1093\/gbe\/evr080","article-title":"Genome-wide heterogeneity of nucleotide substitution model fit.","volume":"3","author":"L Arbiza","year":"2011","journal-title":"Genome Biol Evol"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"1229","DOI":"10.1093\/genetics\/164.3.1229","article-title":"Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.","volume":"164","author":"M Anisimova","year":"2003","journal-title":"Genetics"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"458","DOI":"10.1186\/1471-2105-8-458","article-title":"Recodon: coalescent simulation of coding DNA sequences with recombination, migration and demography.","volume":"8","author":"M Arenas","year":"2007","journal-title":"BMC Bioinformatics"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"760","DOI":"10.1111\/j.1755-0998.2010.02895.x","article-title":"Combining contemporary and ancient DNA in population genetic and phylogeographical studies.","volume":"10","author":"M Navascues","year":"2010","journal-title":"Mol Ecol Resour"},{"key":"ref26","first-page":"235","article-title":"Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees.","volume":"13","author":"A Rambaut","year":"1997","journal-title":"Comput Appl Biosciences"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"2581","DOI":"10.1093\/molbev\/msp174","article-title":"Biological sequence simulation for testing complex evolutionary hypotheses: indel-Seq-Gen version 2.0.","volume":"26","author":"CL Strope","year":"2009","journal-title":"Mol Biol Evol"},{"key":"ref28","first-page":"555","article-title":"PAML: a program package for phylogenetic analysis by maximum likelihood.","volume":"13","author":"Z Yang","year":"1997","journal-title":"Computer Applications in the Biosciences"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"104","DOI":"10.1186\/1471-2105-12-104","article-title":"PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment.","volume":"12","author":"B Sipos","year":"2011","journal-title":"BMC Bioinformatics"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"299","DOI":"10.1080\/10618600.1996.10474713","article-title":"R: a language for data analysis and graphics.","volume":"169","author":"R Ihaka","year":"1996","journal-title":"J Comput Graph Stat"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"437","DOI":"10.1016\/j.tig.2006.06.005","article-title":"Genomic insights into positive selection.","volume":"22","author":"S Biswas","year":"2006","journal-title":"Trends Genet"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"980","DOI":"10.1101\/gr.5157306","article-title":"Genomic signatures of positive selection in humans and the limits of outlier approaches.","volume":"16","author":"JL Kelley","year":"2006","journal-title":"Genome Res"},{"key":"ref33","doi-asserted-by":"crossref","first-page":"2064","DOI":"10.1093\/bioinformatics\/btq322","article-title":"MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus.","volume":"26","author":"G Ewing","year":"2010","journal-title":"Bioinformatics"},{"key":"ref34","doi-asserted-by":"crossref","first-page":"3673","DOI":"10.1093\/bioinformatics\/bth417","article-title":"SelSim: a program to simulate population genetic data with natural selection and recombination.","volume":"20","author":"CC Spencer","year":"2004","journal-title":"Bioinformatics"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"1133","DOI":"10.1534\/genetics.109.113423","article-title":"The effect of recombination on the reconstruction of ancestral sequences.","volume":"184","author":"M Arenas","year":"2010","journal-title":"Genetics"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"126","DOI":"10.1186\/1471-2105-10-126","article-title":"Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning.","volume":"10","author":"P Lemey","year":"2009","journal-title":"BMC Bioinformatics"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"1061","DOI":"10.1038\/nature09534","article-title":"A map of human genome variation from population-scale sequencing.","volume":"467","author":"RM Durbin","year":"2010","journal-title":"Nature"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1186\/1471-2156-7-16","article-title":"Fast \u201ccoalescent\u201d simulation.","volume":"7","author":"P Marjoram","year":"2006","journal-title":"BMC Genet"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"1387","DOI":"10.1098\/rstb.2005.1673","article-title":"Approximating the coalescent with recombination.","volume":"360","author":"GA McVean","year":"2005","journal-title":"Philos Trans R Soc Lond B Biol Sci"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"481","DOI":"10.1146\/annurev.ecolsys.39.110707.173414","article-title":"Genetic consequences of range expansions.","volume":"40","author":"L Excoffier","year":"2009","journal-title":"Annu Rev Ecol Evol Syst"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1093\/molbev\/msr187","article-title":"Consequences of range contractions and range shifts on molecular diversity.","volume":"29","author":"M Arenas","year":"2012","journal-title":"Mol Biol Evol"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"902","DOI":"10.1111\/j.1755-0998.2010.02881.x","article-title":"A first step towards inferring levels of long-distance dispersal during past expansions.","volume":"10","author":"N Ray","year":"2010","journal-title":"Mol Ecol Resour"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"879","DOI":"10.1093\/genetics\/156.2.879","article-title":"Consequences of recombination on traditional phylogenetic analysis.","volume":"156","author":"MH Schierup","year":"2000","journal-title":"Genetics"},{"key":"ref44","doi-asserted-by":"crossref","first-page":"613","DOI":"10.2174\/157016210794088263","article-title":"Computational design of centralized HIV-1 genes.","volume":"8","author":"M Arenas","year":"2010","journal-title":"Curr HIV Res"},{"key":"ref45","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1186\/1471-2148-10-186","article-title":"Positive selection of HIV host factors and the evolution of lentivirus genes.","volume":"10","author":"K Bozek","year":"2010","journal-title":"BMC Evol Biol"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"431","DOI":"10.1093\/genetics\/155.1.431","article-title":"Codon-substitution models for heterogeneous selection pressure at amino acid sites.","volume":"155","author":"Z Yang","year":"2000","journal-title":"Genetics"},{"key":"ref47","doi-asserted-by":"crossref","first-page":"793","DOI":"10.1080\/10635150490522304","article-title":"Model selection and model averaging in phylogenetics: advantages of Akaike Information Criterion and Bayesian approaches over likelihood ratio tests.","volume":"53","author":"D Posada","year":"2004","journal-title":"Syst Biol"},{"key":"ref48","doi-asserted-by":"crossref","first-page":"445","DOI":"10.1146\/annurev.ecolsys.36.102003.152633","article-title":"Model selection in phylogenetics.","volume":"36","author":"J Sullivan","year":"2005","journal-title":"Annu Rev Ecol Evol Syst"},{"key":"ref49","doi-asserted-by":"crossref","first-page":"242","DOI":"10.1186\/1471-2148-10-242","article-title":"Performance of criteria for selecting evolutionary models in phylogenetics: a comprehensive study based on simulated datasets.","volume":"10","author":"A Luo","year":"2010","journal-title":"BMC Evol Biol"},{"key":"ref50","doi-asserted-by":"crossref","first-page":"696","DOI":"10.1080\/10635150390235520","article-title":"A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.","volume":"52","author":"S Guindon","year":"2003","journal-title":"Syst Biol"},{"key":"ref51","first-page":"459","article-title":"A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates.","volume":"11","author":"MK Kuhner","year":"1994","journal-title":"Molecular Biol Evol"},{"key":"ref52","doi-asserted-by":"crossref","first-page":"708","DOI":"10.1093\/oxfordjournals.molbev.a004129","article-title":"Evaluation of methods for detecting recombination from DNA sequences: empirical data.","volume":"19","author":"D Posada","year":"2002","journal-title":"Mol Biol Evol"},{"key":"ref53","doi-asserted-by":"crossref","first-page":"646","DOI":"10.1038\/ng.139","article-title":"Interpreting principal component analyses of spatial population genetic variation.","volume":"40","author":"J Novembre","year":"2008","journal-title":"Nat Genet"},{"key":"ref54","doi-asserted-by":"crossref","first-page":"469","DOI":"10.3378\/027.082.0408","article-title":"Response to Cavalli-Sforza interview [Human Biology 82(3):245\u2013266 (June 2010)].","volume":"82","author":"J Novembre","year":"2010","journal-title":"Hum Biol"},{"key":"ref55","doi-asserted-by":"crossref","first-page":"1257","DOI":"10.1093\/molbev\/msq010","article-title":"Principal component analysis under population genetic models of range expansion and admixture.","volume":"27","author":"O Fran\u00e7ois","year":"2010","journal-title":"Mol Biol Evol"},{"key":"ref56","article-title":"The history and geography of human genes","author":"LL Cavalli-Sforza","year":"1994"},{"key":"ref57","doi-asserted-by":"crossref","first-page":"347","DOI":"10.1016\/j.tree.2008.04.004","article-title":"Surfing during population expansions promotes genetic revolutions and structuration.","volume":"23","author":"L Excoffier","year":"2008","journal-title":"Trends Ecol Evol"},{"key":"ref58","doi-asserted-by":"crossref","first-page":"379","DOI":"10.1146\/annurev-ecolsys-102209-144621","article-title":"Approximate Bayesian computation in evolution and ecology.","volume":"41","author":"MA Beaumont","year":"2010","journal-title":"Annu Rev Ecol Evol Syst"},{"key":"ref59","doi-asserted-by":"crossref","first-page":"385","DOI":"10.1093\/molbev\/msn264","article-title":"Rapid evolution and the importance of recombination to the gastroenteric pathogen Campylobacter jejuni.","volume":"26","author":"DJ Wilson","year":"2009","journal-title":"Mol Biol Evol"},{"key":"ref60","doi-asserted-by":"crossref","first-page":"e10284","DOI":"10.1371\/journal.pone.0010284","article-title":"Formulating a historical and demographic model of recent human evolution based on resequencing data from noncoding regions.","volume":"5","author":"G Laval","year":"2010","journal-title":"PLoS ONE"},{"key":"ref61","doi-asserted-by":"crossref","first-page":"266","DOI":"10.1186\/1471-2148-11-266","article-title":"Coevolution of amino acid residues in the key photosynthetic enzyme Rubisco.","volume":"11","author":"M Wang","year":"2011","journal-title":"BMC Evol Biol"},{"key":"ref62","doi-asserted-by":"crossref","DOI":"10.1007\/978-3-540-35306-5","article-title":"Structural approaches to sequence evolution","author":"U Bastolla","year":"2007"},{"key":"ref63","doi-asserted-by":"crossref","first-page":"1229","DOI":"10.1002\/jcc.21147","article-title":"Prediction and analysis of binding affinities for chemically diverse HIV-1 PR inhibitors by the modified SAFE_p approach.","volume":"30","author":"M Arenas","year":"2009","journal-title":"J Comput Chem"},{"key":"ref64","doi-asserted-by":"crossref","first-page":"e1000304","DOI":"10.1371\/journal.pgen.1000304","article-title":"The population genetics of dN\/dS.","volume":"4","author":"S Kryazhimskiy","year":"2008","journal-title":"PLoS Genet"},{"key":"ref65","doi-asserted-by":"crossref","first-page":"506","DOI":"10.1093\/jhered\/91.6.506","article-title":"SIMCOAL: a general coalescent program for the simulation of molecular data in interconnected populations with arbitrary demography.","volume":"91","author":"L Excoffier","year":"2000","journal-title":"J Heredity"},{"key":"ref66","doi-asserted-by":"crossref","first-page":"1733","DOI":"10.1093\/bioinformatics\/bti154","article-title":"Serial SimCoal: a population genetics model for data from multiple populations and points in time.","volume":"21","author":"CN Anderson","year":"2005","journal-title":"Bioinformatics"},{"key":"ref67","first-page":"41","article-title":"Mlcoalsim: multilocus coalescent simulations.","volume":"3","author":"SE Ramos-Onsins","year":"2007","journal-title":"Evol Bioinform Online"},{"key":"ref68","doi-asserted-by":"crossref","first-page":"427","DOI":"10.1093\/genetics\/151.2.427","article-title":"Population dynamics of HIV-1 inferred from gene sequences.","volume":"151","author":"NC Grassly","year":"1999","journal-title":"Genetics"},{"key":"ref69","doi-asserted-by":"crossref","first-page":"825","DOI":"10.1093\/bioinformatics\/btm024","article-title":"A simulation test bed for hypotheses of genome evolution.","volume":"23","author":"RG Beiko","year":"2007","journal-title":"Bioinformatics"},{"key":"ref70","doi-asserted-by":"crossref","first-page":"688","DOI":"10.1093\/molbev\/msn008","article-title":"Simulating DNA coding sequence evolution with EvolveAGene 3.","volume":"25","author":"BG Hall","year":"2008","journal-title":"Mol Biol Evol"},{"key":"ref71","doi-asserted-by":"crossref","first-page":"iii31","DOI":"10.1093\/bioinformatics\/bti1200","article-title":"DNA assembly with gaps (Dawg): simulating sequence evolution.","volume":"21","author":"RA Cartwright","year":"2005","journal-title":"Bioinformatics"},{"key":"ref72","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1177\/117693430500100007","article-title":"MySSP: Non-stationary evolutionary sequence simulation, including indels.","volume":"1","author":"MS Rosenberg","year":"2005","journal-title":"Evol Bioinform Online"},{"key":"ref73","doi-asserted-by":"crossref","first-page":"716","DOI":"10.1093\/bioinformatics\/bti812","article-title":"In silico sequence evolution with site-specific interactions along phylogenetic trees.","volume":"22","author":"T Gesell","year":"2006","journal-title":"Bioinformatics"},{"key":"ref74","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1093\/bioinformatics\/14.2.157","article-title":"Rose: generating sequence families.","volume":"14","author":"J Stoye","year":"1998","journal-title":"Bioinformatics"},{"key":"ref75","doi-asserted-by":"crossref","first-page":"R147","DOI":"10.1186\/gb-2008-9-10-r147","article-title":"Tools for simulating evolution of aligned genomic regions with integrated parameter estimation.","volume":"9","author":"A Varadarajan","year":"2008","journal-title":"Genome Biol"},{"key":"ref76","doi-asserted-by":"crossref","first-page":"1115","DOI":"10.1093\/molbev\/msr268","article-title":"ALF\u2013a simulation framework for genome evolution.","volume":"29","author":"DA Dalquen","year":"2012","journal-title":"Mol Biol Evol"},{"key":"ref77","doi-asserted-by":"crossref","first-page":"236","DOI":"10.1186\/1471-2105-6-236","article-title":"SIMPROT: using an empirically determined indel distribution in simulations of protein evolution.","volume":"6","author":"A Pang","year":"2005","journal-title":"BMC Bioinformatics"},{"key":"ref78","doi-asserted-by":"crossref","first-page":"268","DOI":"10.1186\/1471-2105-11-268","article-title":"Characterization of phylogenetic networks with NetTest.","volume":"11","author":"M Arenas","year":"2010","journal-title":"BMC Bioinformatics"},{"key":"ref79","doi-asserted-by":"crossref","first-page":"525","DOI":"10.1086\/627905","article-title":"Stochastic models of phylogeny and the evolution of diversity.","volume":"81","author":"DM Raup","year":"1973","journal-title":"J Geol"},{"key":"ref80","doi-asserted-by":"crossref","first-page":"3549","DOI":"10.1111\/j.1365-294X.2010.04678.x","article-title":"Utility of computer simulations in landscape genetics.","volume":"19","author":"BK Epperson","year":"2010","journal-title":"Mol Ecol"},{"key":"ref81","doi-asserted-by":"crossref","first-page":"e47","DOI":"10.1371\/journal.pgen.0030047","article-title":"Forward-time simulations of human populations with complex diseases.","volume":"3","author":"B Peng","year":"2007","journal-title":"PLoS Genet"},{"key":"ref82","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1159\/000022963","article-title":"Haplotype evolution and linkage disequilibrium: a simulation study.","volume":"51","author":"F Calafell","year":"2001","journal-title":"Hum Hered"},{"key":"ref83","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1525\/abt.2010.72.2.9","article-title":"PopGen fishbowl: a free online simulation model of microevolutionary processes.","volume":"72","author":"TC Jones","year":"2010","journal-title":"Am Biol Teach"},{"key":"ref84","doi-asserted-by":"crossref","first-page":"558","DOI":"10.1111\/j.1755-0998.2009.02803.x","article-title":"Pedagog: software for simulating eco-evolutionary population dynamics.","volume":"10","author":"JA Coombs","year":"2010","journal-title":"Mol Ecol Resour"},{"key":"ref85","doi-asserted-by":"crossref","first-page":"2417","DOI":"10.1534\/genetics.107.085332","article-title":"Exploring population genetic models with recombination using efficient forward-time simulations.","volume":"178","author":"B Padhukasahasram","year":"2008","journal-title":"Genetics"},{"key":"ref86","first-page":"843","article-title":"Coalescent theory.","author":"M Nordborg","year":"2007"},{"key":"ref87","article-title":"Coalescent Theory: An Introduction","author":"J Wakeley","year":"2008"},{"key":"ref88","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1017\/S0016672301005183","article-title":"Simulating genealogies of selected alleles in a population of variable size.","volume":"78","author":"M Slatkin","year":"2001","journal-title":"Genet Res"},{"key":"ref89","doi-asserted-by":"crossref","first-page":"413","DOI":"10.1046\/j.1365-294x.1998.00344.x","article-title":"Island models and the coalescent process.","volume":"7","author":"RR Hudson","year":"1998","journal-title":"Mol Ecol"},{"key":"ref90","doi-asserted-by":"crossref","first-page":"183","DOI":"10.1016\/0040-5809(83)90013-8","article-title":"Properties of a neutral allele model with intragenic recombination.","volume":"23","author":"RR Hudson","year":"1983","journal-title":"Theor Popul Biol"},{"key":"ref91","doi-asserted-by":"crossref","first-page":"831","DOI":"10.1093\/genetics\/120.3.831","article-title":"The coalescent process in models with selection and recombination.","volume":"120","author":"RR Hudson","year":"1988","journal-title":"Genetics"}],"container-title":["PLoS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pcbi.1002495","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,3,29]],"date-time":"2025-03-29T04:42:59Z","timestamp":1743223379000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1002495"}},"subtitle":[],"editor":[{"given":"Fran","family":"Lewitter","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2012,5,31]]},"references-count":91,"journal-issue":{"issue":"5","published-online":{"date-parts":[[2012,5,31]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1002495","relation":{},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,5,31]]}}}