{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,2]],"date-time":"2026-07-02T03:46:02Z","timestamp":1782963962848,"version":"3.54.5"},"reference-count":13,"publisher":"Public Library of Science (PLoS)","issue":"5","license":[{"start":{"date-parts":[[2012,5,31]],"date-time":"2012-05-31T00:00:00Z","timestamp":1338422400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"DOI":"10.1371\/journal.pcbi.1002529","type":"journal-article","created":{"date-parts":[[2012,5,31]],"date-time":"2012-05-31T21:04:03Z","timestamp":1338498243000},"page":"e1002529","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":191,"title":["Exploring Massive, Genome Scale Datasets with the GenometriCorr Package"],"prefix":"10.1371","volume":"8","author":[{"given":"Alexander","family":"Favorov","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Loris","family":"Mularoni","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Leslie M.","family":"Cope","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yulia","family":"Medvedeva","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andrey A.","family":"Mironov","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Vsevolod J.","family":"Makeev","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sarah J.","family":"Wheelan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"340","published-online":{"date-parts":[[2012,5,31]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1038\/321209a0","article-title":"CpG-rich islands and the function of DNA methylation.","volume":"321","author":"AP Bird","year":"1986","journal-title":"Nature"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1101\/sqb.2010.75.006","article-title":"Chromatin boundaries, insulators, and long-range interactions in the nucleus.","volume":"75","author":"KE Giles","year":"2010","journal-title":"Cold Spring Harb Symp Quant Biol"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"4313","DOI":"10.1098\/rsta.2009.0164","article-title":"An overview of recent developments in genomics and associated statistical methods.","volume":"367","author":"PJ Bickel","year":"2009","journal-title":"Philos Transact A Math Phys Eng Sci"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"1660","DOI":"10.1214\/10-AOAS363","article-title":"Subsampling methods for genomic inference.","volume":"4","author":"PJ Bickel","year":"2010","journal-title":"Ann Appl Stat"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"R80","DOI":"10.1186\/gb-2004-5-10-r80","article-title":"Bioconductor: Open software development for computational biology and bioinformatics.","volume":"5","author":"RC Gentleman","year":"2004","journal-title":"Genome Biol"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"21966","DOI":"10.1073\/pnas.1016382107","article-title":"Inaugural article: DNA transposon hermes inserts into DNA in nucleosome-free regions in vivo.","volume":"107","author":"S Gangadharan","year":"2010","journal-title":"Proc Natl Acad Sci U S A"},{"key":"ref7","first-page":"Unit 19.10.1","article-title":"Galaxy: A web-based genome analysis tool for experimentalists.","volume":"19","author":"D Blankenberg","year":"2010","journal-title":"Curr Protoc Mol Biol Chapter"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"D61","DOI":"10.1093\/nar\/gkl842","article-title":"NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins.","volume":"35","author":"KD Pruitt","year":"2007","journal-title":"Nucleic Acids Res"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"a000034","DOI":"10.1101\/cshperspect.a000034","article-title":"The NF-kappaB family of transcription factors and its regulation.","volume":"1","author":"A Oeckinghaus","year":"2009","journal-title":"Cold Spring Harb Perspect Biol"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"e1002046","DOI":"10.1371\/journal.pcbi.1002046","article-title":"Distributions of transposable elements reveal hazardous zones in mammalian introns.","volume":"7","author":"Y Zhang","year":"2011","journal-title":"PLoS Comput Biol"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"1045","DOI":"10.1038\/nbt1010-1045","article-title":"The NIH roadmap epigenomics mapping consortium.","volume":"28","author":"BE Bernstein","year":"2010","journal-title":"Nat Biotechnol"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"499","DOI":"10.1093\/biostatistics\/kxq005","article-title":"Redefining CpG islands using hidden markov models.","volume":"11","author":"H Wu","year":"2010","journal-title":"Biostatistics"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"693","DOI":"10.1101\/gr.129460.111","article-title":"Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots.","volume":"22","author":"L Mularoni","year":"2012","journal-title":"Genome Res"}],"container-title":["PLoS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pcbi.1002529","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2018,10,23]],"date-time":"2018-10-23T20:55:44Z","timestamp":1540328144000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1002529"}},"subtitle":[],"editor":[{"given":"Hilmar","family":"Lapp","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2012,5,31]]},"references-count":13,"journal-issue":{"issue":"5","published-online":{"date-parts":[[2012,5,31]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1002529","relation":{},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2012,5,31]]}}}