{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,4]],"date-time":"2026-04-04T00:50:44Z","timestamp":1775263844721,"version":"3.50.1"},"reference-count":32,"publisher":"Public Library of Science (PLoS)","issue":"3","license":[{"start":{"date-parts":[[2013,3,7]],"date-time":"2013-03-07T00:00:00Z","timestamp":1362614400000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"DOI":"10.1371\/journal.pcbi.1002928","type":"journal-article","created":{"date-parts":[[2013,3,7]],"date-time":"2013-03-07T18:53:53Z","timestamp":1362682433000},"page":"e1002928","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":31,"title":["Evolving Digital Ecological Networks"],"prefix":"10.1371","volume":"9","author":[{"given":"Miguel A.","family":"Fortuna","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Luis","family":"Zaman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Aaron P.","family":"Wagner","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Charles","family":"Ofria","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"340","published-online":{"date-parts":[[2013,3,7]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"1161","DOI":"10.1126\/science.860134","article-title":"Evolution and tinkering","volume":"196","author":"F Jacob","year":"1977","journal-title":"Science"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"772","DOI":"10.1038\/355772a0","article-title":"Byte-sized evolution","volume":"355","author":"JM Smith","year":"1992","journal-title":"Nature"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"465","DOI":"10.1111\/j.1365-2435.2007.01275.x","article-title":"Eco-evolutionary dynamics of communities and ecosystems","volume":"21","author":"GF Fussmann","year":"2007","journal-title":"Functional Ecology"},{"key":"ref4","first-page":"125","article-title":"The coevolving web of life","volume":"173","author":"JN Thompson","year":"2009","journal-title":"Am Nat"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"426","DOI":"10.1126\/science.1193954","article-title":"The newest synthesis: understanding the interplay of evolutionary and ecological dynamics","volume":"331","author":"TW Schoener","year":"2011","journal-title":"Science"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"2116","DOI":"10.1126\/science.284.5423.2116","article-title":"The evolution of species interactions","volume":"284","author":"JN Thompson","year":"1999","journal-title":"Science"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"611","DOI":"10.2307\/2408229","article-title":"When is it coevolution?","volume":"34","author":"DH Janzen","year":"1990","journal-title":"Evolution"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"906","DOI":"10.2307\/1941243","article-title":"Diffuse coevolution within complex communities","volume":"69","author":"LR Fox","year":"1988","journal-title":"Ecology"},{"key":"ref9","doi-asserted-by":"crossref","unstructured":"Thompson JN (1994) The coevolutionary process. University of Chicago Press.","DOI":"10.7208\/chicago\/9780226797670.001.0001"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"802","DOI":"10.1086\/657048","article-title":"When does coevolution promote diversification?","volume":"176","author":"JB Yoder","year":"2010","journal-title":"Am Nat"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"328","DOI":"10.1038\/nature10853","article-title":"Coevolution in multidimensional trait space favours escape from parasites and pathogens","volume":"483","author":"RT Gilman","year":"2012","journal-title":"Nature"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"925","DOI":"10.1038\/nature05956","article-title":"Non-random coextinctions in phylogenetically structured mutualistic networks","volume":"448","author":"EL Rezende","year":"2007","journal-title":"Nature"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"918","DOI":"10.1038\/nature09113","article-title":"Ecological interactions are evolutionarily conserved across the entire tree of life","volume":"465","author":"JM G\u00f3mez","year":"2010","journal-title":"Nature"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"362","DOI":"10.1046\/j.1461-0248.2000.00161.x","article-title":"Linking genetic change to community evolution: insights from studies of bacteria and bacteriophage","volume":"3","author":"BJM Bohannan","year":"2000","journal-title":"Ecol Lett"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"6808","DOI":"10.1073\/pnas.91.15.6808","article-title":"Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations","volume":"91","author":"RE Lenski","year":"1994","journal-title":"Proc Natl Acad Sci USA"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"E288","DOI":"10.1073\/pnas.1101595108","article-title":"Statistical structure of host-phage interactions","volume":"108","author":"CO Flores","year":"2011","journal-title":"Proc Natl Acad Sci USA"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"428","DOI":"10.1126\/science.1214449","article-title":"Repeatability and contingency in the evolution of a key innovation in phage lambda","volume":"335","author":"JR Meyer","year":"2012","journal-title":"Science"},{"key":"ref18","unstructured":"Gould SJ (1990) Wonderful life: The Burgess Shale and the nature of history. New York: W W Norton &amp; Co. 347 p."},{"key":"ref19","first-page":"1","article-title":"The coreworld: emergence and evolution of cooperative structures in a computational chemistry","volume":"75","author":"S Rasmussen","year":"1990","journal-title":"Physica D"},{"key":"ref20","first-page":"371","article-title":"An approach to the synthesis of life. In Langton CG, Taylor C, Farmer JD, Rasmussen S, editors","author":"TS Ray","year":"1992","journal-title":"Proceedings of Artificial Life II"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"191","DOI":"10.1162\/106454604773563612","article-title":"Avida: a software platform for research in computational evolutionary biology","volume":"10","author":"C Ofria","year":"2004","journal-title":"Artificial Life"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"661","DOI":"10.1038\/23245","article-title":"Genome complexity, robustness and genetic interactions in digital organisms","volume":"400","author":"RE Lenski","year":"1999","journal-title":"Nature"},{"key":"ref23","doi-asserted-by":"crossref","unstructured":"Zaman L, Devangam S, Ofria C (2011) Rapid host-parasite coevolution drives the production and maintenance of diversity in digital organisms. In: Krasnogor N, Lanzi PL, editors. Proceedings of the 13<sup>th<\/sup> Annual Conference on Genetic and Evolutionary Computation (GECCO). pp 219\u2013226.","DOI":"10.1145\/2001576.2001607"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"E230","DOI":"10.1086\/645087","article-title":"Inverse-gene-for-gene infection genetics and coevolutionary dynamics","volume":"174","author":"A Fenton","year":"2009","journal-title":"Am Nat"},{"key":"ref25","first-page":"79","article-title":"Infection genetics: gene-for-gene versus matching-alleles models an all points in between","volume":"4","author":"A Agrawal","year":"2002","journal-title":"Evolutionary Ecology Research"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"362","DOI":"10.1046\/j.1461-0248.2000.00161.x","article-title":"Linking genetic change to community evolution: insights from studies of bacteria and bacteriophage","volume":"3","author":"BJM Bohannan","year":"2000","journal-title":"Ecol Lett"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"492","DOI":"10.1016\/j.pt.2010.05.008","article-title":"Network analysis shining light on parasite ecology and diversity","volume":"26","author":"R Poulin","year":"2010","journal-title":"Trends Parasitol"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"877","DOI":"10.1111\/j.1461-0248.2011.01649.x","article-title":"Evolution and coevolution in mutualistic networks","volume":"14","author":"PR Guimar\u00e3es","year":"2011","journal-title":"Ecol Lett"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"228","DOI":"10.1038\/35012234","article-title":"The diversity-stability debate","volume":"405","author":"KS McCann","year":"2000","journal-title":"Nature"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"349","DOI":"10.1126\/science.1220529","article-title":"Diversity of interaction types and ecological community stability","volume":"337","author":"A Mougi","year":"2012","journal-title":"Science"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"853","DOI":"10.1126\/science.1188321","article-title":"Stability of ecological communities and the architecture of mutualistic and trophic networks","volume":"329","author":"E Th\u00e9bault","year":"2010","journal-title":"Science"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"206","DOI":"10.1093\/ae\/37.4.206","article-title":"Darwin&apos;s Madagascan hawk moth prediction","volume":"37","author":"G Kritsky","year":"1991","journal-title":"American Entomologist"}],"container-title":["PLoS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pcbi.1002928","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,5,9]],"date-time":"2020-05-09T07:28:34Z","timestamp":1589009314000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1002928"}},"subtitle":[],"editor":[{"given":"Shoshana","family":"Wodak","sequence":"first","affiliation":[],"role":[{"role":"editor","vocabulary":"crossref"}]}],"short-title":[],"issued":{"date-parts":[[2013,3,7]]},"references-count":32,"journal-issue":{"issue":"3","published-online":{"date-parts":[[2013,3,7]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1002928","relation":{},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,3,7]]}}}