{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,11]],"date-time":"2026-05-11T21:27:11Z","timestamp":1778534831086,"version":"3.51.4"},"reference-count":84,"publisher":"Public Library of Science (PLoS)","issue":"11","license":[{"start":{"date-parts":[[2013,11,14]],"date-time":"2013-11-14T00:00:00Z","timestamp":1384387200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"DOI":"10.1371\/journal.pcbi.1003331","type":"journal-article","created":{"date-parts":[[2013,11,14]],"date-time":"2013-11-14T17:30:53Z","timestamp":1384450253000},"page":"e1003331","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":37,"title":["Mechanical and Assembly Units of Viral Capsids Identified via Quasi-Rigid Domain Decomposition"],"prefix":"10.1371","volume":"9","author":[{"given":"Guido","family":"Polles","sequence":"first","affiliation":[]},{"given":"Giuliana","family":"Indelicato","sequence":"additional","affiliation":[]},{"given":"Raffaello","family":"Potestio","sequence":"additional","affiliation":[]},{"given":"Paolo","family":"Cermelli","sequence":"additional","affiliation":[]},{"given":"Reidun","family":"Twarock","sequence":"additional","affiliation":[]},{"given":"Cristian","family":"Micheletti","sequence":"additional","affiliation":[]}],"member":"340","published-online":{"date-parts":[[2013,11,14]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"051902","DOI":"10.1103\/PhysRevE.77.051902","article-title":"Tilable nature of virus capsids and the role of topological constraints in natural capsid design","volume":"77","author":"RV Mannige","year":"2008","journal-title":"Phys Rev E"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"e1002905","DOI":"10.1371\/journal.pcbi.1002905","article-title":"Viral capsid proteins are segregated in structural fold space","volume":"9","author":"S Cheng","year":"2013","journal-title":"PLoS Comp Biol"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1101\/SQB.1962.027.001.005","article-title":"Physical principles in the construction of regular viruses","volume":"27","author":"DL Caspar","year":"1962","journal-title":"Cold Spring Harb Symp Quant Biol"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"606","DOI":"10.1016\/j.bpj.2011.12.016","article-title":"Exploring the symmetry and mechanism of virus capsid maturation via an ensemble of pathways","volume":"102","author":"ER May","year":"2012","journal-title":"Biophys J"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"733","DOI":"10.1016\/S0022-2836(02)00135-3","article-title":"The mechanism and pathway of pH induced swelling in cowpea chlorotic mottle virus","volume":"318","author":"F Tama","year":"2002","journal-title":"J Mol Biol"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"299","DOI":"10.1016\/j.jmb.2004.10.054","article-title":"Diversity and identity of mechanical properties of icosahedral viral capsids studied with elastic network normal mode analysis","volume":"345","author":"F Tama","year":"2005","journal-title":"J Mol Biol"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"413","DOI":"10.1016\/j.str.2004.12.015","article-title":"Maturation dynamics of bacteriophage HK97 capsid","volume":"13","author":"AJ Rader","year":"2005","journal-title":"Structure"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"S173","DOI":"10.1088\/1478-3975\/2\/4\/S12","article-title":"Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies","volume":"2","author":"C Chennubhotla","year":"2005","journal-title":"Phys Biol"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"e9423","DOI":"10.1371\/journal.pone.0009423","article-title":"Periodic Table of Virus Capsids: Implications for Natural Selection and Design","volume":"5","author":"RV Mannige","year":"2010","journal-title":"PLoS ONE"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"399","DOI":"10.1016\/j.jmb.2011.02.039","article-title":"Simple rules for efficient assembly predict the layout of a packaged viral RNA","volume":"408","author":"EC Dykeman","year":"2011","journal-title":"J Mol Biol"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"298","DOI":"10.1016\/j.jmb.2010.05.059","article-title":"The impact of viral RNA on assembly pathway selection","volume":"401","author":"VL Morton","year":"2010","journal-title":"J Mol Biol"},{"key":"ref12","doi-asserted-by":"crossref","first-page":"3640","DOI":"10.1529\/biophysj.108.136176","article-title":"Influence of nonuniform geometry on nanoindentation of viral capsids","volume":"95","author":"MM Gibbons","year":"2008","journal-title":"Biophys J"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"713","DOI":"10.1016\/j.jtbi.2006.04.023","article-title":"Master equation approach to the assembly of viral capsids","volume":"242","author":"T Keef","year":"2006","journal-title":"Journal of theoretical biology"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"015101","DOI":"10.1063\/1.3276287","article-title":"Nanoindentation of virus capsids in a molecular model","volume":"132","author":"M Cieplak","year":"2010","journal-title":"J Chem Phys"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"1767","DOI":"10.1016\/j.str.2006.10.003","article-title":"Stability and dynamics of virus capsids described by coarse-grained modeling","volume":"14","author":"A Arkhipov","year":"2006","journal-title":"Structure"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"437","DOI":"10.1016\/j.str.2005.11.014","article-title":"Molecular dynamics simulations of the complete satellite tobacco mosaic virus","volume":"14","author":"PL Freddolino","year":"2006","journal-title":"Structure"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"e1002367","DOI":"10.1371\/journal.pcbi.1002367","article-title":"On the effect of thermodynamic equilibrium on the assembly efficiency of complex multi-layered virus-like particles (VLP): the case of rotavirus VLP","volume":"8(2)","author":"A Rold\u00e3o","year":"2012","journal-title":"PLoS Comput Biol"},{"key":"ref18","first-page":"S5055","article-title":"Structural rigidity in the capsid assembly of cowpea chlorotic mottle virus","volume":"16","author":"BM Hespenheide","year":"2004","journal-title":"J Physics: Condens Matter"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"3029","DOI":"10.1529\/biophysj.105.076737","article-title":"Stochastic kinetics of viral capsid assembly based on detailed protein structures","volume":"90","author":"M Hemberg","year":"2006","journal-title":"Biophys J"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.virusres.2012.06.008","article-title":"Mechanical properties of viruses analyzed by atomic force microscopy: A virological perspective","volume":"168","author":"M Mateu","year":"2012","journal-title":"Virus Research"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"12028","DOI":"10.1073\/pnas.1207437109","article-title":"Mechanical elasticity as a physical signature of conformational dynamics in a virus particle","volume":"109","author":"M Castellanos","year":"2012","journal-title":"Proc Natl Acad Sci USA"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"3905","DOI":"10.1529\/biophysj.104.040055","article-title":"Competing hydrophobic and screened-Coulomb interactions in hepatitis B virus capsid assembly","volume":"86","author":"WK Kegel","year":"2004","journal-title":"Biophys J"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"061906","DOI":"10.1103\/PhysRevE.76.061906","article-title":"Role of electrostatic interactions in the assembly of empty spherical viral capsids","volume":"76","author":"A \u0160iber","year":"2007","journal-title":"Phys Rev E"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"657","DOI":"10.1007\/s10867-012-9278-4","article-title":"How simple can a model of an empty viral capsid be? Charge distributions in viral capsids","volume":"38","author":"AL Bo\u017ei\u010d","year":"2012","journal-title":"J Biol Phys"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"502","DOI":"10.1038\/nchem.1627","article-title":"Probing the biophysical interplay between a viral genome and its capsid","volume":"5","author":"J Snijder","year":"2013","journal-title":"Nature Chem"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1016\/S0969-2126(01)00135-6","article-title":"Structures of the native and swollen forms of cowpea chlorotic mottle virus determined by X-ray crystallography and cryo-electron microscopy","volume":"3","author":"JA Speir","year":"1995","journal-title":"Structure"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"425","DOI":"10.1002\/(SICI)1097-0134(199703)27:3<425::AID-PROT10>3.0.CO;2-N","article-title":"Model-free methods of analyzing domain motions in proteins from simulation: A comparison of normal mode analysis and molecular dynamics simulation of lysozyme","volume":"27","author":"S Hayward","year":"1997","journal-title":"Proteins: Structure, Function, and Genetics"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"417","DOI":"10.1002\/(SICI)1097-0134(19981115)33:3<417::AID-PROT10>3.0.CO;2-8","article-title":"Analysis of domain motions by approximate normal mode calculations","volume":"33","author":"K Hinsen","year":"1998","journal-title":"Proteins"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"369","DOI":"10.1002\/(SICI)1097-0134(19990215)34:3<369::AID-PROT9>3.0.CO;2-F","article-title":"Analysis of domain motion in large proteins","volume":"34","author":"K Hinsen","year":"1999","journal-title":"Proteins"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"2115","DOI":"10.1529\/biophysj.106.083568","article-title":"A natural coarse graining for simulating large biomolecular motion","volume":"91","author":"H Gohlke","year":"2006","journal-title":"Biophys J"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"197","DOI":"10.1002\/prot.20836","article-title":"An enhanced elastic network model to represent the motions of domain-swapped proteins","volume":"63","author":"G Song","year":"2006","journal-title":"Proteins"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"918","DOI":"10.1110\/ps.073390208","article-title":"Correspondences between low-energy modes in enzymes: dynamics-based alignment of enzymatic functional families","volume":"17","author":"A Zen","year":"2008","journal-title":"Protein Sci"},{"key":"ref33","doi-asserted-by":"crossref","first-page":"4993","DOI":"10.1016\/j.bpj.2009.03.051","article-title":"Coarse-grained description of protein internal dynamics: an optimal strategy for decomposing proteins in rigid subunits","volume":"96","author":"R Potestio","year":"2009","journal-title":"Biophys J"},{"key":"ref34","doi-asserted-by":"crossref","first-page":"2743","DOI":"10.1093\/bioinformatics\/btp512","article-title":"PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains","volume":"25","author":"T Aleksiev","year":"2009","journal-title":"Bioinformatics"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"42","DOI":"10.1529\/biophysj.105.076851","article-title":"Dynamic pathways for viral capsid assembly","volume":"91","author":"MF Hagan","year":"2006","journal-title":"Biophys J"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"619","DOI":"10.1016\/j.bpj.2010.04.035","article-title":"Mechanisms of capsid assembly around a polymer","volume":"99","author":"A Kivenson","year":"2010","journal-title":"Biophys J"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"135101","DOI":"10.1063\/1.3698408","article-title":"Langevin dynamics simulation of polymer-assisted virus-like assembly","volume":"136","author":"JP Mahalik","year":"2012","journal-title":"J Chem Phy"},{"issue":"Database issue","key":"ref38","doi-asserted-by":"crossref","first-page":"436","DOI":"10.1093\/nar\/gkn840","article-title":"VIPERdb2: an enhanced and web API enabled relational database for structural virology","volume":"37","author":"M Carrillo-Tripp","year":"2009","journal-title":"Nucleic Acids Res"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"e1002433","DOI":"10.1371\/journal.pcbi.1002433","article-title":"Corresponding functional dynamics across the Hsp90 chaperone family: insights from a multiscale analysis of MD simulations","volume":"8","author":"G Morra","year":"2012","journal-title":"PLoS Comput Biol"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"423","DOI":"10.1016\/0022-2836(85)90230-X","article-title":"Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme","volume":"181","author":"M Levitt","year":"1985","journal-title":"J Mol Biol"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"1905","DOI":"10.1103\/PhysRevLett.77.1905","article-title":"Large amplitude elastic motions in proteins from a single-parameter, atomic analysis","volume":"77","author":"MM Tirion","year":"1996","journal-title":"Phys Rev Lett"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1016\/S1359-0278(97)00024-2","article-title":"Direct evaluation of thermal fluctuations in protein using a single parameter harmonic potential","volume":"2","author":"I Bahar","year":"1997","journal-title":"Folding and Design"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"3090","DOI":"10.1103\/PhysRevLett.79.3090","article-title":"Gaussian dynamics of folded proteins","volume":"79","author":"T Haliloglu","year":"1997","journal-title":"Phys Rev Lett"},{"key":"ref44","doi-asserted-by":"crossref","first-page":"297","DOI":"10.1016\/S0022-2836(02)00627-7","article-title":"Exploring global distortions of biological macromolecules and assemblies from low-resolution structural information and elastic network theory","volume":"321","author":"F Tama","year":"2002","journal-title":"J Mol Biol"},{"key":"ref45","doi-asserted-by":"crossref","first-page":"635","DOI":"10.1002\/prot.20049","article-title":"Accurate and effcient description of protein vibrational dynamics: comparing molecular dynamics and Gaussian models","volume":"55","author":"C Micheletti","year":"2004","journal-title":"Proteins"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"6184","DOI":"10.1073\/pnas.0601744103","article-title":"Nanoindentation studies of full and empty viral capsids and the effects of capsid protein mutations on elasticity and strength","volume":"103","author":"J Michel","year":"2006","journal-title":"Proc Natl Acad Sci USA"},{"key":"ref47","doi-asserted-by":"crossref","first-page":"1187","DOI":"10.1002\/adma.200801709","article-title":"Nanoindentation Studies Reveal Material Properties of Viruses","volume":"21","author":"WH Roos","year":"2009","journal-title":"Advanced Materials"},{"key":"ref48","doi-asserted-by":"crossref","first-page":"107","DOI":"10.1016\/S1047-8477(03)00126-6","article-title":"An elastic network model of HK97 capsid maturation","volume":"143","author":"MK Kim","year":"2003","journal-title":"J Struct Biol"},{"key":"ref49","doi-asserted-by":"crossref","first-page":"011919","DOI":"10.1103\/PhysRevE.79.011919","article-title":"Stability of elastic icosadeltahedral shells under uniform external pressure: Application to viruses under osmotic pressure","volume":"79","author":"A \u0160iber","year":"2009","journal-title":"Phys Rev E"},{"key":"ref50","doi-asserted-by":"crossref","first-page":"051915","DOI":"10.1103\/PhysRevE.78.051915","article-title":"Nonspecific interactions in spontaneous assembly of empty versus functional single-stranded RNA viruses","volume":"78","author":"A \u0160iber","year":"2008","journal-title":"Phys Rev E"},{"key":"ref51","doi-asserted-by":"crossref","first-page":"3746","DOI":"10.1039\/C1CP22756D","article-title":"Energies and pressures in viruses: contribution of nonspecific electrostatic interactions","volume":"14","author":"A \u0160iber","year":"2012","journal-title":"Phys Chem Chem Phys"},{"key":"ref52","doi-asserted-by":"crossref","first-page":"1050","DOI":"10.1016\/j.jmb.2013.01.004","article-title":"Sequence-specific, RNA-protein interactions overcome electrostatic barriers preventing assembly of satellite tobacco necrosis virus coat protein","volume":"425","author":"R Ford","year":"2013","journal-title":"J Mol Biol"},{"key":"ref53","doi-asserted-by":"crossref","first-page":"212","DOI":"10.1006\/viro.1998.9107","article-title":"Comparison of the native CCMV virion with in vitro assembled CCMV virions by cryoelectron microscopy and inage reconstruction","volume":"218","author":"J Fox","year":"1998","journal-title":"Virology"},{"key":"ref54","doi-asserted-by":"crossref","first-page":"450","DOI":"10.1006\/viro.2000.0619","article-title":"Mechanism of capsid assembly for an icosahedral plant virus","volume":"277","author":"A Zlotnick","year":"2000","journal-title":"Virology"},{"key":"ref55","doi-asserted-by":"crossref","first-page":"255","DOI":"10.1016\/S0969-2126(01)00156-3","article-title":"Crystal structure of the MS2 coat protein dimer: implications for RNA binding and virus assembly","volume":"3","author":"CZ Ni","year":"1995","journal-title":"Structure"},{"key":"ref56","doi-asserted-by":"crossref","first-page":"541","DOI":"10.1016\/j.jmb.2007.03.020","article-title":"A simple, RNA-mediated allosteric switch controls the pathway to formation of a T = 3 viral capsid","volume":"369","author":"PG Stockley","year":"2007","journal-title":"J Mol Biol"},{"key":"ref57","doi-asserted-by":"crossref","first-page":"15769","DOI":"10.1073\/pnas.1204357109","article-title":"Evidence that viral RNAs have evolved for efficient, two-stage packaging","volume":"109","author":"A Borodavka","year":"2012","journal-title":"Proc Natl Acad Sci USA"},{"key":"ref58","doi-asserted-by":"crossref","first-page":"2474","DOI":"10.1021\/ct3002128","article-title":"Screening for the location of RNA using the chloride ion distribution in simulations of virus capsids","volume":"8","author":"DSD Larsson","year":"2012","journal-title":"J Chem Theory Comp"},{"key":"ref59","doi-asserted-by":"crossref","first-page":"356","DOI":"10.1016\/S1047-8477(03)00028-5","article-title":"Pseudo-atomic models of swollen CCMV from cryo-electron microscopy data","volume":"142","author":"H Liu","year":"2003","journal-title":"J Struct Biol"},{"key":"ref60","doi-asserted-by":"crossref","first-page":"325","DOI":"10.1002\/bip.20120","article-title":"Electrostatic interaction between RNA and protein capsid in CCMV simulated by a coarse-grain RNA model and a Monte Carlo Approach","volume":"75","author":"D Zhang","year":"2004","journal-title":"Biopolymers"},{"key":"ref61","doi-asserted-by":"crossref","first-page":"11181","DOI":"10.1021\/jp102314e","article-title":"All-atom multiscale simulation of cowpea chlorotic mottle virus capsid swelling","volume":"114","author":"Y Miao","year":"2010","journal-title":"J Phys Chem B"},{"key":"ref62","doi-asserted-by":"crossref","first-page":"3750","DOI":"10.1021\/ct200888u","article-title":"Coarse-grained and atomistic simulations of the salt-stable cowpea chlorotic mottle virus (SS-CCMV) subunit 26\u201349: <italic>\u03b2<\/italic>-barrel stability of the hexamer and pentamer geometries","volume":"8","author":"T Bereau","year":"2012","journal-title":"J Chem Theory Comp"},{"key":"ref63","doi-asserted-by":"crossref","first-page":"620","DOI":"10.1006\/jmbi.1993.1616","article-title":"The refined structure of bacteriophage MS2 at 2.8 \u00c5 resolution","volume":"234","author":"R Golmohammadi","year":"1993","journal-title":"J Mol Biol"},{"key":"ref64","doi-asserted-by":"crossref","first-page":"36","DOI":"10.1038\/345036a0","article-title":"The three-dimensional structure of the bacterial virus MS2","volume":"345","author":"K Valeg\u00e5rd","year":"1990","journal-title":"Nature"},{"key":"ref65","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1038\/newbio234209a0","article-title":"Fate of maturation protein during infection by coliphage MS2","volume":"234","author":"M Kozak","year":"1971","journal-title":"Nature, nature new biology"},{"key":"ref66","doi-asserted-by":"crossref","first-page":"1095","DOI":"10.1016\/j.jmb.2005.11.040","article-title":"The MS2 coat protein shell is likely assembled under tension: a novel role for the MS2 bacteriophage A protein as revealed by small-angle neutron scattering","volume":"355","author":"DA Kuzmanovic","year":"2006","journal-title":"J Mol Biol"},{"key":"ref67","doi-asserted-by":"crossref","first-page":"935","DOI":"10.1016\/j.jmb.2010.05.037","article-title":"The impact of viral RNA on the association rates of capsid protein assembly: bacteriophage MS2 as a case study","volume":"400","author":"KM Elsawy","year":"2010","journal-title":"J Mol Biol"},{"key":"ref68","doi-asserted-by":"crossref","first-page":"1463","DOI":"10.1111\/j.1742-4658.2006.05167.x","article-title":"Dissecting the role of protein-protein and protein-nucleic acid interactions in MS2 bacteriophage stability","volume":"273","author":"SMB Lima","year":"2006","journal-title":"The FEBS Journal"},{"key":"ref69","doi-asserted-by":"crossref","first-page":"93","DOI":"10.1016\/0022-2836(82)90033-X","article-title":"Structure of satellite tobacco necrosis virus at 3.0 \u00c5 resolution","volume":"159","author":"L Liljas","year":"1982","journal-title":"J Mol Biol"},{"key":"ref70","doi-asserted-by":"crossref","first-page":"735","DOI":"10.1016\/0022-2836(84)90047-0","article-title":"Structure of satellite tobacco necrosis virus after crystallographic refinement at 2.5 \u00c5 resolution","volume":"177","author":"T Jones","year":"1984","journal-title":"J Mol Biol"},{"key":"ref71","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1016\/j.jmb.2011.07.062","article-title":"Construction and crystal structure of recombinant STNV capsids","volume":"413","author":"SW Lane","year":"2011","journal-title":"J Mol Biol"},{"key":"ref72","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1006\/jmbi.1997.1570","article-title":"Refined structure of satellite tobacco mosaic virus at 1.8 \u00c5 resolution","volume":"277","author":"SB Larson","year":"1998","journal-title":"J Mol Biol"},{"key":"ref73","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1016\/S0959-440X(00)00166-4","article-title":"Satellite tobacco mosaic virus RNA: structure and implications for assembly","volume":"11","author":"SB Larson","year":"2001","journal-title":"Curr Opin Struct Biol"},{"key":"ref74","doi-asserted-by":"crossref","first-page":"179","DOI":"10.1038\/361179a0","article-title":"Double-helical RNA in satellite tobacco mosaic virus","volume":"361","author":"SB Larson","year":"1993","journal-title":"Nature"},{"key":"ref75","doi-asserted-by":"crossref","first-page":"975","DOI":"10.1083\/jcb.138.5.975","article-title":"Structure of L-A virus: A specialized compartment for the transcription and replication of double-stranded RNA","volume":"138","author":"JR Cast\u00f3n","year":"1997","journal-title":"J Cell Biol"},{"key":"ref76","doi-asserted-by":"crossref","first-page":"725","DOI":"10.1038\/nsb844","article-title":"L-A virus at 3.4 \u00c5 resolution reveals particle architecture and mRNA decapping mechanism","volume":"9","author":"H Naitow","year":"2002","journal-title":"Nature Struct Biol"},{"key":"ref77","doi-asserted-by":"crossref","first-page":"77","DOI":"10.1038\/83089","article-title":"The structure of Pariacoto virus reveals a dodecahedral cage of duplex RNA","volume":"8","author":"L Tang","year":"2001","journal-title":"Nature Struct Biol"},{"key":"ref78","doi-asserted-by":"crossref","first-page":"11371","DOI":"10.1128\/JVI.78.20.11371-11378.2004","article-title":"Heterologous RNA encapsidated in Pariacoto virus-like particles forms a dodecahedral cage similar to genomic RNA in wild-type virions","volume":"78","author":"K Johnson","year":"2004","journal-title":"J Virol"},{"key":"ref79","doi-asserted-by":"crossref","first-page":"45","DOI":"10.1016\/S0065-3527(05)64003-1","article-title":"Structure-derived insights into viral assembly","volume":"64","author":"V Reddy","year":"2005","journal-title":"Adv Virus Res"},{"key":"ref80","doi-asserted-by":"crossref","first-page":"183","DOI":"10.1016\/S0969-2126(96)00021-4","article-title":"Crystal structures of murine polyomavirus in complex with straight-chain and branched-chain syaliloligosaccharide receptor fragments","volume":"4","author":"T Stehle","year":"1992","journal-title":"Structure"},{"key":"ref81","doi-asserted-by":"crossref","first-page":"895","DOI":"10.1016\/0092-8674(86)90071-1","article-title":"Self-assembly of purified polyomavirus capsid protein VP1","volume":"46","author":"D Salunke","year":"1986","journal-title":"Cell"},{"key":"ref82","doi-asserted-by":"crossref","unstructured":"Lehoucq RB, Sorensen DC, Yang C (1997) ARPACK Users Guide: Solution of Large Scale Eigenvalue Problems by Implicitly Restarted Arnoldi Methods. Philadelphia, USA: SIAM.","DOI":"10.1137\/1.9780898719628"},{"key":"ref83","doi-asserted-by":"crossref","first-page":"607","DOI":"10.1016\/j.jtbi.2008.10.019","article-title":"Group theory of icosahedral virus capsid vibrations: A top-down approach","volume":"256","author":"K Peeters","year":"2009","journal-title":"J Theor Biol"},{"key":"ref84","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1002\/jcc.1160","article-title":"Dynamics of large proteins through hierarchical levels of coarse-grained structures","volume":"23","author":"P Doruker","year":"2002","journal-title":"Journal of Computational Chemistry"}],"container-title":["PLoS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pcbi.1003331","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,8,1]],"date-time":"2019-08-01T18:37:29Z","timestamp":1564684649000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1003331"}},"subtitle":[],"editor":[{"given":"Avner","family":"Schlessinger","sequence":"first","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2013,11,14]]},"references-count":84,"journal-issue":{"issue":"11","published-online":{"date-parts":[[2013,11,14]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1003331","relation":{"has-review":[{"id-type":"doi","id":"10.3410\/f.718178685.793490499","asserted-by":"object"}]},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2013,11,14]]}}}