{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,21]],"date-time":"2026-01-21T23:31:48Z","timestamp":1769038308645,"version":"3.49.0"},"reference-count":57,"publisher":"Public Library of Science (PLoS)","issue":"1","license":[{"start":{"date-parts":[[2014,1,30]],"date-time":"2014-01-30T00:00:00Z","timestamp":1391040000000},"content-version":"unspecified","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/publicdomain\/zero\/1.0\/"}],"content-domain":{"domain":["www.ploscompbiol.org"],"crossmark-restriction":false},"short-container-title":["PLoS Comput Biol"],"DOI":"10.1371\/journal.pcbi.1003447","type":"journal-article","created":{"date-parts":[[2014,1,30]],"date-time":"2014-01-30T21:54:23Z","timestamp":1391118863000},"page":"e1003447","update-policy":"https:\/\/doi.org\/10.1371\/journal.pcbi.corrections_policy","source":"Crossref","is-referenced-by-count":126,"title":["A Division in PIN-Mediated Auxin Patterning during Organ Initiation in Grasses"],"prefix":"10.1371","volume":"10","author":[{"given":"Devin L.","family":"O'Connor","sequence":"first","affiliation":[]},{"given":"Adam","family":"Runions","sequence":"additional","affiliation":[]},{"given":"Aaron","family":"Sluis","sequence":"additional","affiliation":[]},{"given":"Jennifer","family":"Bragg","sequence":"additional","affiliation":[]},{"given":"John P.","family":"Vogel","sequence":"additional","affiliation":[]},{"given":"Przemyslaw","family":"Prusinkiewicz","sequence":"additional","affiliation":[]},{"given":"Sarah","family":"Hake","sequence":"additional","affiliation":[]}],"member":"340","published-online":{"date-parts":[[2014,1,30]]},"reference":[{"key":"ref1","doi-asserted-by":"crossref","first-page":"686","DOI":"10.1016\/j.ceb.2011.09.006","article-title":"Cell polarity in plants: when two do the same, it is not the same\u2026","volume":"23","author":"J Dettmer","year":"2011","journal-title":"Curr Opin Cell Biol"},{"key":"ref2","doi-asserted-by":"crossref","first-page":"R331","DOI":"10.1016\/j.cub.2011.02.031","article-title":"Auxin, self-organisation, and the colonial nature of plants","volume":"21","author":"OM Leyser","year":"2011","journal-title":"Current Biology"},{"key":"ref3","doi-asserted-by":"crossref","first-page":"2675","DOI":"10.1242\/dev.030353","article-title":"Auxin transport routes in plant development","volume":"136","author":"J Petr\u00e1sek","year":"2009","journal-title":"Development"},{"key":"ref4","doi-asserted-by":"crossref","first-page":"914","DOI":"10.1126\/science.1123542","article-title":"PIN proteins perform a rate-limiting function in cellular auxin efflux","volume":"312","author":"J Petr\u00e1sek","year":"2006","journal-title":"Science"},{"key":"ref5","doi-asserted-by":"crossref","first-page":"883","DOI":"10.1126\/science.1121356","article-title":"Polar PIN localization directs auxin flow in plants","volume":"312","author":"J Wisniewska","year":"2006","journal-title":"Science"},{"key":"ref6","doi-asserted-by":"crossref","first-page":"249","DOI":"10.1186\/gb-2009-10-12-249","article-title":"The PIN-FORMED (PIN) protein family of auxin transporters","volume":"10","author":"P Krecek","year":"2009","journal-title":"Genome Biol"},{"key":"ref7","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1016\/j.tplants.2012.08.009","article-title":"Origin and evolution of PIN auxin transporters in the green lineage","volume":"18","author":"T Viaene","year":"2012","journal-title":"Trends Plant Sci"},{"key":"ref8","doi-asserted-by":"crossref","first-page":"1136","DOI":"10.1038\/nature08066","article-title":"Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter","volume":"459","author":"J Mravec","year":"2009","journal-title":"Nature"},{"key":"ref9","doi-asserted-by":"crossref","first-page":"591","DOI":"10.1016\/S0092-8674(03)00924-3","article-title":"Local, efflux-dependent auxin gradients as a common module for plant organ formation","volume":"115","author":"E Benkov\u00e1","year":"2003","journal-title":"Cell"},{"key":"ref10","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1038\/nature03184","article-title":"The PIN auxin efflux facilitator network controls growth and patterning in <italic>Arabidopsis<\/italic> roots","volume":"433","author":"I Blilou","year":"2005","journal-title":"Nature"},{"key":"ref11","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1038\/nature02085","article-title":"Efflux-dependent auxin gradients establish the apical-basal axis of <italic>Arabidopsis<\/italic>","volume":"426","author":"J Friml","year":"2003","journal-title":"Nature"},{"key":"ref12","first-page":"255","article-title":"Regulation of phyllotaxis by polar auxin transport","volume":"426","author":"D Reinhardt","year":"2003","journal-title":"Nat Cell Biol"},{"key":"ref13","doi-asserted-by":"crossref","first-page":"1015","DOI":"10.1101\/gad.1402406","article-title":"Control of leaf vascular patterning by polar auxin transport","volume":"20","author":"E Scarpella","year":"2006","journal-title":"Genes Dev"},{"key":"ref14","doi-asserted-by":"crossref","first-page":"3245","DOI":"10.1242\/dev.052456","article-title":"Plasma membrane-bound AGC3 kinases phosphorylate PIN auxin carriers at TPRXS(N\/S) motifs to direct apical PIN recycling","volume":"137","author":"P Dhonukshe","year":"2010","journal-title":"Development"},{"key":"ref15","doi-asserted-by":"crossref","first-page":"1129","DOI":"10.1105\/tpc.109.072678","article-title":"Phosphorylation of conserved PIN motifs directs <italic>Arabidopsis<\/italic> PIN1 polarity and auxin transport","volume":"22","author":"F Huang","year":"2010","journal-title":"Plant Cell"},{"key":"ref16","doi-asserted-by":"crossref","first-page":"918","DOI":"10.1073\/pnas.0909460107","article-title":"PIN phosphorylation is sufficient to mediate PIN polarity and direct auxin transport","volume":"107","author":"J Zhang","year":"2010","journal-title":"Proc Natl Acad Sci USA"},{"key":"ref17","doi-asserted-by":"crossref","first-page":"3424","DOI":"10.1073\/pnas.1015162108","article-title":"Model for the regulation of <italic>Arabidopsis thaliana<\/italic> leaf margin development","volume":"108","author":"GD Bilsborough","year":"2011","journal-title":"Proc Natl Acad Sci USA"},{"key":"ref18","doi-asserted-by":"crossref","first-page":"3955","DOI":"10.1242\/dev.02545","article-title":"ASYMMETRIC LEAVES1 and auxin activities converge to repress <italic>BREVIPEDICELLUS<\/italic> expression and promote leaf development in <italic>Arabidopsis<\/italic>","volume":"133","author":"A Hay","year":"2006","journal-title":"Development"},{"key":"ref19","doi-asserted-by":"crossref","first-page":"942","DOI":"10.1038\/ng1835","article-title":"The genetic basis for differences in leaf form between <italic>Arabidopsis thaliana<\/italic> and its wild relative <italic>Cardamine hirsuta<\/italic>","volume":"38","author":"A Hay","year":"2006","journal-title":"Nat Genet"},{"key":"ref20","doi-asserted-by":"crossref","first-page":"507","DOI":"10.1105\/tpc.12.4.507","article-title":"Auxin regulates the initiation and radial position of plant lateral organs","volume":"12","author":"D Reinhardt","year":"2000","journal-title":"Plant Cell"},{"key":"ref21","doi-asserted-by":"crossref","first-page":"1633","DOI":"10.1073\/pnas.0509839103","article-title":"An auxin-driven polarized transport model for phyllotaxis","volume":"103","author":"H J\u00f6nsson","year":"2006","journal-title":"Proc Natl Acad Sci USA"},{"key":"ref22","doi-asserted-by":"crossref","first-page":"1301","DOI":"10.1073\/pnas.0510457103","article-title":"A plausible model of phyllotaxis","volume":"103","author":"RS Smith","year":"2006","journal-title":"Proc Natl Acad Sci USA"},{"key":"ref23","doi-asserted-by":"crossref","first-page":"e28762","DOI":"10.1371\/journal.pone.0028762","article-title":"Simulation of organ patterning on the floral meristem using a polar auxin transport model","volume":"7","author":"S van Mourik","year":"2012","journal-title":"PLoS ONE"},{"key":"ref24","doi-asserted-by":"crossref","first-page":"384","DOI":"10.1016\/j.tplants.2007.08.004","article-title":"Canalization without flux sensors: a traveling-wave hypothesis","volume":"12","author":"RMH Merks","year":"2007","journal-title":"Trends Plant Sci"},{"key":"ref25","doi-asserted-by":"crossref","first-page":"151","DOI":"10.1016\/S0065-2296(08)60351-1","article-title":"The control of the patterned differentiation of vascular tissues","volume":"9","author":"T Sachs","year":"1981","journal-title":"Adv Bot Res"},{"key":"ref26","doi-asserted-by":"crossref","first-page":"263","DOI":"10.1093\/oxfordjournals.aob.a084281","article-title":"Polarity and induction of organized vascular tissues","volume":"33","author":"T Sachs","year":"1969","journal-title":"Ann Bot-London"},{"key":"ref27","doi-asserted-by":"crossref","first-page":"461","DOI":"10.1098\/rstb.1981.0154","article-title":"The polar transport of auxin and vein patterns in plants","volume":"295","author":"G Mitchison","year":"1981","journal-title":"Philos T Roy Soc B"},{"key":"ref28","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1098\/rspb.1980.0015","article-title":"Model for vein formation in higher-plants","volume":"207","author":"G Mitchison","year":"1980","journal-title":"P Roy Soc Lond B Bio"},{"key":"ref29","doi-asserted-by":"crossref","first-page":"854","DOI":"10.1111\/j.1365-313X.2005.02581.x","article-title":"Reviewing models of auxin canalization in the context of leaf vein pattern formation in <italic>Arabidopsis<\/italic>","volume":"44","author":"A-G Rolland-Lagan","year":"2005","journal-title":"Plant J"},{"key":"ref30","doi-asserted-by":"crossref","first-page":"e1000207","DOI":"10.1371\/journal.pcbi.1000207","article-title":"Flux-based transport enhancement as a plausible unifying mechanism for auxin transport in meristem development","volume":"4","author":"S Stoma","year":"2008","journal-title":"PLoS Comput Biol"},{"key":"ref31","doi-asserted-by":"crossref","first-page":"366","DOI":"10.1016\/j.jtbi.2005.03.017","article-title":"Self-organization of the vascular system in plant leaves: inter-dependent dynamics of auxin flux and carrier proteins","volume":"236","author":"FG Feugier","year":"2005","journal-title":"Journal of Theoretical Biology"},{"key":"ref32","doi-asserted-by":"crossref","first-page":"373","DOI":"10.1101\/gad.497009","article-title":"Integration of transport-based models for phyllotaxis and midvein formation","volume":"23","author":"EM Bayer","year":"2009","journal-title":"Genes Dev"},{"key":"ref33","doi-asserted-by":"crossref","first-page":"1258","DOI":"10.1111\/j.1365-3040.2009.01997.x","article-title":"Auxin transport-feedback models of patterning in plants","volume":"32","author":"RS Smith","year":"2009","journal-title":"Plant Cell Environ"},{"key":"ref34","doi-asserted-by":"crossref","first-page":"e1000476","DOI":"10.1371\/journal.pgen.1000476","article-title":"Microdissection of shoot meristem functional domains","volume":"5","author":"L Brooks","year":"2009","journal-title":"PLoS Genet"},{"key":"ref35","doi-asserted-by":"crossref","first-page":"1537","DOI":"10.4161\/psb.6.10.17326","article-title":"Auxin efflux transporter MtPIN10 regulates compound leaf and flower development in <italic>Medicago truncatula<\/italic>","volume":"6","author":"J Peng","year":"2011","journal-title":"Plant Signal Behav"},{"key":"ref36","doi-asserted-by":"crossref","first-page":"254","DOI":"10.1104\/pp.106.080119","article-title":"<italic>ZmPIN1a<\/italic> and <italic>ZmPIN1b<\/italic> encode two novel putative candidates for polar auxin transport and plant architecture determination of maize","volume":"142","author":"N Carraro","year":"2006","journal-title":"Plant Physiol"},{"key":"ref37","doi-asserted-by":"crossref","first-page":"1913","DOI":"10.1104\/pp.108.121541","article-title":"The relationship between auxin transport and maize branching","volume":"147","author":"A Gallavotti","year":"2008","journal-title":"Plant Physiol"},{"key":"ref38","doi-asserted-by":"crossref","first-page":"16","DOI":"10.3389\/fpls.2012.00016","article-title":"The maize <italic>PIN<\/italic> gene family of auxin transporters","volume":"3","author":"C Forestan","year":"2012","journal-title":"Front Plant Sci"},{"key":"ref39","doi-asserted-by":"crossref","first-page":"1291","DOI":"10.1104\/pp.112.212340","article-title":"<italic>MORE SPIKELETS1<\/italic> is required for spikelet fate in the inflorescence of <italic>Brachypodium distachyon<\/italic>","volume":"161","author":"P Derbyshire","year":"2013","journal-title":"Plant Physiol"},{"key":"ref40","doi-asserted-by":"crossref","first-page":"1899","DOI":"10.1016\/j.cub.2005.09.052","article-title":"Patterns of auxin transport and gene expression during primordium development revealed by live imaging of the <italic>Arabidopsis<\/italic> inflorescence meristem","volume":"15","author":"MG Heisler","year":"2005","journal-title":"Curr Biol"},{"key":"ref41","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1104\/pp.003228","article-title":"Indole acetic acid distribution coincides with vascular differentiation pattern during <italic>Arabidopsis<\/italic> leaf ontogeny","volume":"130","author":"O Avsian-Kretchmer","year":"2002","journal-title":"Plant Physiol"},{"key":"ref42","doi-asserted-by":"crossref","first-page":"631","DOI":"10.1105\/tpc.4.6.631","article-title":"Normal and abnormal development in the <italic>Arabidopsis<\/italic> vegetative shoot apex","volume":"4","author":"JI Medford","year":"1992","journal-title":"Plant Cell"},{"key":"ref43","doi-asserted-by":"crossref","first-page":"973","DOI":"10.2307\/2441479","article-title":"Early histogenesis and semiquantitative histochemistry of leaf initiation in <italic>Triticum aestivum<\/italic>","volume":"59","author":"LS Evans","year":"1972","journal-title":"American Journal of Botany"},{"key":"ref44","doi-asserted-by":"crossref","first-page":"245","DOI":"10.1093\/oxfordjournals.aob.a088407","article-title":"Developmental anatomy of the shoot of Zea mays L","volume":"6","author":"B Sharman","year":"1942","journal-title":"Ann Bot-London"},{"key":"ref45","doi-asserted-by":"crossref","first-page":"1477","DOI":"10.1242\/dev.125.8.1477","article-title":"Symplasmic fields in the tunica of the shoot apical meristem coordinate morphogenetic events","volume":"125","author":"PL Rinne","year":"1998","journal-title":"Development"},{"key":"ref46","doi-asserted-by":"crossref","first-page":"810","DOI":"10.1101\/gad.462608","article-title":"Auxin influx carriers stabilize phyllotactic patterning","volume":"22","author":"K Bainbridge","year":"2008","journal-title":"Genes Dev"},{"key":"ref47","doi-asserted-by":"crossref","first-page":"1136","DOI":"10.1038\/ng.189","article-title":"A developmental framework for dissected leaf formation in the <italic>Arabidopsis<\/italic> relative <italic>Cardamine hirsuta<\/italic>","volume":"40","author":"M Barkoulas","year":"2008","journal-title":"Nat Genet"},{"key":"ref48","doi-asserted-by":"crossref","first-page":"549","DOI":"10.1111\/j.1469-8137.2011.04009.x","article-title":"Computational models of plant development and form","volume":"193","author":"P Prusinkiewicz","year":"2012","journal-title":"New Phytol"},{"key":"ref49","doi-asserted-by":"crossref","first-page":"242","DOI":"10.1016\/j.tplants.2009.02.005","article-title":"Auxin-regulated cell polarity: an inside job?","volume":"14","author":"EM Kramer","year":"2009","journal-title":"Trends Plant Sci"},{"key":"ref50","doi-asserted-by":"crossref","first-page":"2033","DOI":"10.1105\/tpc.111.087064","article-title":"AUXIN BINDING PROTEIN1: The Outsider","volume":"23","author":"M Sauer","year":"2011","journal-title":"Plant Cell"},{"key":"ref51","doi-asserted-by":"crossref","first-page":"2061","DOI":"10.1242\/dev.062984","article-title":"An intracellular partitioning-based framework for tissue cell polarity in plants and animals","volume":"140","author":"K Abley","year":"2013","journal-title":"Development"},{"key":"ref52","doi-asserted-by":"crossref","first-page":"468","DOI":"10.1016\/j.tplants.2011.05.002","article-title":"Prototype cell-to-cell auxin transport mechanism by intracellular auxin compartmentalization","volume":"16","author":"K Wabnik","year":"2011","journal-title":"Trends Plant Sci"},{"key":"ref53","doi-asserted-by":"crossref","first-page":"471","DOI":"10.1007\/s00299-007-0472-y","article-title":"High-efficiency <italic>Agrobacterium<\/italic>-mediated transformation of <italic>Brachypodium distachyon<\/italic> inbred line Bd21-3","volume":"27","author":"J Vogel","year":"2008","journal-title":"Plant Cell Rep"},{"key":"ref54","doi-asserted-by":"crossref","first-page":"74","DOI":"10.1105\/tpc.017962","article-title":"In vivo analysis of cell division, cell growth, and differentiation at the shoot apical meristem in <italic>Arabidopsis<\/italic>","volume":"16","author":"O Grandjean","year":"2004","journal-title":"Plant Cell"},{"key":"ref55","doi-asserted-by":"crossref","first-page":"979","DOI":"10.4161\/psb.5.8.12220","article-title":"The unique relationship between <italic>tsh4<\/italic> and <italic>ra2<\/italic> in patterning floral phytomers","volume":"5","author":"G Chuck","year":"2010","journal-title":"Plant Signal Behav"},{"key":"ref56","first-page":"365","article-title":"Simulation modeling of growing tissues","author":"C Smith","year":"2004","journal-title":"Proceedings of the 4th International Workshop on Functional-Structural Plant Models"},{"key":"ref57","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1111\/j.1095-8339.2009.00996.x","article-title":"An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III","volume":"161","author":"B Bremer","year":"2009","journal-title":"Bot J Linn Soc"}],"container-title":["PLoS Computational Biology"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/dx.plos.org\/10.1371\/journal.pcbi.1003447","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2022,3,24]],"date-time":"2022-03-24T18:57:57Z","timestamp":1648148277000},"score":1,"resource":{"primary":{"URL":"https:\/\/dx.plos.org\/10.1371\/journal.pcbi.1003447"}},"subtitle":[],"editor":[{"given":"Teva","family":"Vernoux","sequence":"first","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2014,1,30]]},"references-count":57,"journal-issue":{"issue":"1","published-online":{"date-parts":[[2014,1,30]]}},"URL":"https:\/\/doi.org\/10.1371\/journal.pcbi.1003447","relation":{},"ISSN":["1553-7358"],"issn-type":[{"value":"1553-7358","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014,1,30]]}}}